RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 UPK3BL1B0FP48 263 aa21.95■■□□□ 1.1
SNX1-210ENST00000560260 UPK3BL2E5RIL1 263 aa21.95■■□□□ 1.1
SNX1-210ENST00000560260 OPHN1O60890 802 aa21.95■■□□□ 1.1
SNX1-210ENST00000560260 PGLSO95336 258 aa21.95■■□□□ 1.1
SNX1-210ENST00000560260 SEMA4FO95754 770 aa21.95■■□□□ 1.1
SNX1-210ENST00000560260 PPP2CBP62714 309 aa21.95■■□□□ 1.1
SNX1-210ENST00000560260 PPP2CAP67775 309 aa21.95■■□□□ 1.1
SNX1-210ENST00000560260 RPL6Q02878 288 aaKnown RBP21.95■■□□□ 1.1
SNX1-210ENST00000560260 PMS2CLQ68D20 193 aa21.95■■□□□ 1.1
SNX1-210ENST00000560260 FBXL19Q6PCT2 694 aa21.95■■□□□ 1.1
SNX1-210ENST00000560260 BRAT1Q6PJG6 821 aa21.95■■□□□ 1.1
SNX1-210ENST00000560260 SLC36A4Q6YBV0 504 aa21.95■■□□□ 1.1
SNX1-210ENST00000560260 SLC41A1Q8IVJ1 513 aa21.95■■□□□ 1.1
SNX1-210ENST00000560260 HCAR2Q8TDS4 363 aa21.95■■□□□ 1.1
SNX1-210ENST00000560260 PDCD6IPQ8WUM4 868 aaKnown RBP21.95■■□□□ 1.1
SNX1-210ENST00000560260 SPOCK2Q92563 424 aa21.95■■□□□ 1.1
SNX1-210ENST00000560260 NAP1L3Q99457 506 aaPredicted RBP21.95■■□□□ 1.1
SNX1-210ENST00000560260 MLPHQ9BV36 600 aaPredicted RBP21.95■■□□□ 1.1
SNX1-210ENST00000560260 EPC1Q9H2F5 836 aa21.95■■□□□ 1.1
SNX1-210ENST00000560260 UBP1Q9NZI7 540 aa21.95■■□□□ 1.1
SNX1-210ENST00000560260 CHKBQ9Y259 395 aa21.95■■□□□ 1.1
SNX1-210ENST00000560260 DRG1Q9Y295 367 aaKnown RBP21.95■■□□□ 1.1
SNX1-210ENST00000560260 PCDHB9Q9Y5E1 797 aa21.95■■□□□ 1.1
SNX1-210ENST00000560260 FADS3Q9Y5Q0 445 aa21.95■■□□□ 1.1
SNX1-210ENST00000560260 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa21.94■■□□□ 1.1
SNX1-210ENST00000560260 AREL1O15033 823 aa21.94■■□□□ 1.1
SNX1-210ENST00000560260 GCATO75600 419 aa21.94■■□□□ 1.1
SNX1-210ENST00000560260 ZNF189O75820 626 aaPredicted RBP21.94■■□□□ 1.1
SNX1-210ENST00000560260 STK10O94804 968 aaKnown RBP21.94■■□□□ 1.1
SNX1-210ENST00000560260 METTL18O95568 372 aa21.94■■□□□ 1.1
SNX1-210ENST00000560260 CPP00450 1065 aa21.94■■□□□ 1.1
SNX1-210ENST00000560260 ZSCAN5DPP0CG00 497 aa21.94■■□□□ 1.1
SNX1-210ENST00000560260 SEMG2Q02383 582 aa21.94■■□□□ 1.1
SNX1-210ENST00000560260 SFSWAPQ12872 951 aaKnown RBP21.94■■□□□ 1.1
SNX1-210ENST00000560260 SIM2Q14190 667 aaPredicted RBP21.94■■□□□ 1.1
SNX1-210ENST00000560260 PTPRRQ15256 657 aa21.94■■□□□ 1.1
SNX1-210ENST00000560260 SLC14A2Q15849 920 aa21.94■■□□□ 1.1
SNX1-210ENST00000560260 UGP2Q16851 508 aa21.94■■□□□ 1.1
SNX1-210ENST00000560260 ZC3H14Q6PJT7 736 aaKnown RBP21.94■■□□□ 1.1
SNX1-210ENST00000560260 CEP68Q76N32 757 aa21.94■■□□□ 1.1
SNX1-210ENST00000560260 TMEFF1Q8IYR6 380 aa21.94■■□□□ 1.1
SNX1-210ENST00000560260 PIH1D2Q8WWB5 315 aa21.94■■□□□ 1.1
SNX1-210ENST00000560260 MAGOHBQ96A72 148 aaKnown RBP21.94■■□□□ 1.1
SNX1-210ENST00000560260 TRIB3Q96RU7 358 aa21.94■■□□□ 1.1
SNX1-210ENST00000560260 FERMT1Q9BQL6 677 aa21.94■■□□□ 1.1
SNX1-210ENST00000560260 PCDH12Q9NPG4 1184 aa21.94■■□□□ 1.1
SNX1-210ENST00000560260 CEP192Q8TEP8 1941 aa21.94■■□□□ 1.1
SNX1-210ENST00000560260 THADAQ6YHU6 1953 aa21.93■■□□□ 1.1
SNX1-210ENST00000560260 PRR23AA6NEV1 266 aa21.93■■□□□ 1.1
SNX1-210ENST00000560260 FAM47DPA6NHR8 397 aa21.93■■□□□ 1.1
SNX1-210ENST00000560260 PHF2O75151 1096 aa21.93■■□□□ 1.1
SNX1-210ENST00000560260 COILP38432 576 aaPredicted RBP21.93■■□□□ 1.1
SNX1-210ENST00000560260 NBL1P41271 181 aa21.93■■□□□ 1.1
SNX1-210ENST00000560260 LPAL2Q16609 132 aa21.93■■□□□ 1.1
SNX1-210ENST00000560260 CFAP58Q5T655 872 aa21.93■■□□□ 1.1
SNX1-210ENST00000560260 ARMC12Q5T9G4 340 aa21.93■■□□□ 1.1
SNX1-210ENST00000560260 FAXCQ5TGI0 409 aa21.93■■□□□ 1.1
SNX1-210ENST00000560260 ITPRIPL1Q6GPH6 555 aa21.93■■□□□ 1.1
SNX1-210ENST00000560260 PRR23BQ6ZRT6 265 aa21.93■■□□□ 1.1
SNX1-210ENST00000560260 KLHDC8BQ8IXV7 354 aa21.93■■□□□ 1.1
SNX1-210ENST00000560260 TAB3Q8N5C8 712 aaPredicted RBP21.93■■□□□ 1.1
SNX1-210ENST00000560260 OR2T34Q8NGX1 318 aa21.93■■□□□ 1.1
SNX1-210ENST00000560260 HOMER3Q9NSC5 361 aa21.93■■□□□ 1.1
SNX1-210ENST00000560260 SPAG17Q6Q759 2223 aa21.93■■□□□ 1.1
SNX1-210ENST00000560260 AP1G1O43747 822 aa21.92■■□□□ 1.1
SNX1-210ENST00000560260 NDUFS2O75306 463 aa21.92■■□□□ 1.1
SNX1-210ENST00000560260 PMPCBO75439 489 aa21.92■■□□□ 1.1
SNX1-210ENST00000560260 IFNB1P01574 187 aa21.92■■□□□ 1.1
SNX1-210ENST00000560260 IGHV4-34P06331 123 aa21.92■■□□□ 1.1
SNX1-210ENST00000560260 STIP1P31948 543 aaKnown RBP21.92■■□□□ 1.1
SNX1-210ENST00000560260 PTGER3P43115 390 aa21.92■■□□□ 1.1
SNX1-210ENST00000560260 PCSK7Q16549 785 aa21.92■■□□□ 1.1
SNX1-210ENST00000560260 P3H1Q32P28 736 aa21.92■■□□□ 1.1
SNX1-210ENST00000560260 ARHGEF18Q6ZSZ5 1173 aa21.92■■□□□ 1.1
SNX1-210ENST00000560260 ARMCX6Q7L4S7 300 aa21.92■■□□□ 1.1
SNX1-210ENST00000560260 TTC7BQ86TV6 843 aa21.92■■□□□ 1.1
SNX1-210ENST00000560260 RAB7BQ96AH8 199 aa21.92■■□□□ 1.1
SNX1-210ENST00000560260 ZC3H10Q96K80 434 aaKnown RBP21.92■■□□□ 1.1
SNX1-210ENST00000560260 MRGPRX2Q96LB1 330 aa21.92■■□□□ 1.1
SNX1-210ENST00000560260 PCDH9Q9HC56 1237 aa21.92■■□□□ 1.1
SNX1-210ENST00000560260 FAM153AQ9UHL3 310 aa21.92■■□□□ 1.1
SNX1-210ENST00000560260 ZFR2Q9UPR6 939 aaKnown RBP21.92■■□□□ 1.1
SNX1-210ENST00000560260 MAP3K13O43283 966 aa21.91■■□□□ 1.1
SNX1-210ENST00000560260 MMP12P39900 470 aa21.91■■□□□ 1.1
SNX1-210ENST00000560260 WNT3AP56704 352 aa21.91■■□□□ 1.1
SNX1-210ENST00000560260 RALGDSQ12967 914 aa21.91■■□□□ 1.1
SNX1-210ENST00000560260 OLIG2Q13516 323 aa21.91■■□□□ 1.1
SNX1-210ENST00000560260 GALNT3Q14435 633 aa21.91■■□□□ 1.1
SNX1-210ENST00000560260 KDELC2Q7Z4H8 507 aa21.91■■□□□ 1.1
SNX1-210ENST00000560260 C11orf74Q86VG3 221 aa21.91■■□□□ 1.1
SNX1-210ENST00000560260 LPCAT1Q8NF37 534 aa21.91■■□□□ 1.1
SNX1-210ENST00000560260 HSPA12BQ96MM6 686 aa21.91■■□□□ 1.1
SNX1-210ENST00000560260 PHOX2BQ99453 314 aa21.91■■□□□ 1.1
SNX1-210ENST00000560260 DDX47Q9H0S4 455 aaKnown RBP21.91■■□□□ 1.1
SNX1-210ENST00000560260 IRF2BPLQ9H1B7 796 aa21.91■■□□□ 1.1
SNX1-210ENST00000560260 KDM4CQ9H3R0 1056 aa21.91■■□□□ 1.1
SNX1-210ENST00000560260 PREBQ9HCU5 417 aa21.91■■□□□ 1.1
SNX1-210ENST00000560260 B4GALT6Q9UBX8 382 aa21.91■■□□□ 1.1
SNX1-210ENST00000560260 SMG5Q9UPR3 1016 aaKnown RBP21.91■■□□□ 1.1
SNX1-210ENST00000560260 LRRC72A6NJI9 287 aa21.9■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms