RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-223ENST00000556689 PNMA6AP0CW24 399 aaPredicted RBP12.8□□□□□ -0.36
SHMT2-223ENST00000556689 RHOQP17081 205 aa12.8□□□□□ -0.36
SHMT2-223ENST00000556689 ADRA1BP35368 520 aa12.8□□□□□ -0.36
SHMT2-223ENST00000556689 MAPKAPK2P49137 400 aa12.8□□□□□ -0.36
SHMT2-223ENST00000556689 SRP54P61011 504 aaKnown RBP12.8□□□□□ -0.36
SHMT2-223ENST00000556689 ATP11AP98196 1134 aa12.8□□□□□ -0.36
SHMT2-223ENST00000556689 NRG1Q02297 640 aaPredicted RBP12.8□□□□□ -0.36
SHMT2-223ENST00000556689 ZFP36L1Q07352 338 aaKnown RBP12.8□□□□□ -0.36
SHMT2-223ENST00000556689 SRSF1Q07955 248 aaKnown RBP eCLIP12.8□□□□□ -0.36
SHMT2-223ENST00000556689 LRRC14Q15048 493 aa12.8□□□□□ -0.36
SHMT2-223ENST00000556689 TCEA2Q15560 299 aa12.8□□□□□ -0.36
SHMT2-223ENST00000556689 ALG11Q2TAA5 492 aa12.8□□□□□ -0.36
SHMT2-223ENST00000556689 LRRC73Q5JTD7 316 aa12.8□□□□□ -0.36
SHMT2-223ENST00000556689 COLEC12Q5KU26 742 aa12.8□□□□□ -0.36
SHMT2-223ENST00000556689 ATXN7L2Q5T6C5 722 aaPredicted RBP12.8□□□□□ -0.36
SHMT2-223ENST00000556689 TRNP1Q6NT89 227 aa12.8□□□□□ -0.36
SHMT2-223ENST00000556689 LEKR1Q6ZMV7 388 aa12.8□□□□□ -0.36
SHMT2-223ENST00000556689 ARCQ7LC44 396 aa12.8□□□□□ -0.36
SHMT2-223ENST00000556689 NLRP14Q86W24 1093 aa12.8□□□□□ -0.36
SHMT2-223ENST00000556689 FAM71AQ8IYT1 594 aa12.8□□□□□ -0.36
SHMT2-223ENST00000556689 Q8N9G6 341 aaPredicted RBP12.8□□□□□ -0.36
SHMT2-223ENST00000556689 WRAP53Q9BUR4 548 aaKnown RBP12.8□□□□□ -0.36
SHMT2-223ENST00000556689 APOOQ9BUR5 198 aa12.8□□□□□ -0.36
SHMT2-223ENST00000556689 SIX2Q9NPC8 291 aa12.8□□□□□ -0.36
SHMT2-223ENST00000556689 DKK3Q9UBP4 350 aa12.8□□□□□ -0.36
SHMT2-223ENST00000556689 APPL1Q9UKG1 709 aa12.8□□□□□ -0.36
SHMT2-223ENST00000556689 LOXL2Q9Y4K0 774 aa12.8□□□□□ -0.36
SHMT2-223ENST00000556689 MAST4O15021 2626 aa12.8□□□□□ -0.36
SHMT2-223ENST00000556689 FAM170AA1A519 330 aa12.79□□□□□ -0.36
SHMT2-223ENST00000556689 ZSCAN5CA6NGD5 496 aaPredicted RBP12.79□□□□□ -0.36
SHMT2-223ENST00000556689 BUB1O43683 1085 aa12.79□□□□□ -0.36
SHMT2-223ENST00000556689 RAMP2O60895 175 aa12.79□□□□□ -0.36
SHMT2-223ENST00000556689 TNFP01375 233 aa12.79□□□□□ -0.36
SHMT2-223ENST00000556689 CYP11B1P15538 503 aa12.79□□□□□ -0.36
SHMT2-223ENST00000556689 GLB1P16278 677 aa12.79□□□□□ -0.36
SHMT2-223ENST00000556689 XPAP23025 273 aaPredicted RBP12.79□□□□□ -0.36
SHMT2-223ENST00000556689 SUOXP51687 545 aa12.79□□□□□ -0.36
SHMT2-223ENST00000556689 INPP5AQ14642 412 aa12.79□□□□□ -0.36
SHMT2-223ENST00000556689 NFATC4Q14934 902 aa12.79□□□□□ -0.36
SHMT2-223ENST00000556689 IRF4Q15306 451 aa12.79□□□□□ -0.36
SHMT2-223ENST00000556689 TBR1Q16650 682 aa12.79□□□□□ -0.36
SHMT2-223ENST00000556689 WSCD2Q2TBF2 565 aa12.79□□□□□ -0.36
SHMT2-223ENST00000556689 TMEM52BQ4KMG9 183 aa12.79□□□□□ -0.36
SHMT2-223ENST00000556689 C2CD6Q53TS8 623 aa12.79□□□□□ -0.36
SHMT2-223ENST00000556689 ZNF574Q6ZN55 896 aaPredicted RBP12.79□□□□□ -0.36
SHMT2-223ENST00000556689 CCNJLQ8IV13 435 aa12.79□□□□□ -0.36
SHMT2-223ENST00000556689 MSANTD4Q8NCY6 345 aa12.79□□□□□ -0.36
SHMT2-223ENST00000556689 GPR156Q8NFN8 814 aa12.79□□□□□ -0.36
SHMT2-223ENST00000556689 ATL2Q8NHH9 583 aa12.79□□□□□ -0.36
SHMT2-223ENST00000556689 GDAP1L1Q96MZ0 367 aa12.79□□□□□ -0.36
SHMT2-223ENST00000556689 CMKLR1Q99788 373 aa12.79□□□□□ -0.36
SHMT2-223ENST00000556689 TTYH3Q9C0H2 523 aa12.79□□□□□ -0.36
SHMT2-223ENST00000556689 TMEM248Q9NWD8 314 aa12.79□□□□□ -0.36
SHMT2-223ENST00000556689 RWDD2AQ9UIY3 292 aa12.79□□□□□ -0.36
SHMT2-223ENST00000556689 MFHAS1Q9Y4C4 1052 aa12.79□□□□□ -0.36
SHMT2-223ENST00000556689 PCDHGA4Q9Y5G9 962 aa12.79□□□□□ -0.36
SHMT2-223ENST00000556689 PRAMEF33A0A0G2JMD5 474 aa12.78□□□□□ -0.36
SHMT2-223ENST00000556689 A0A1W2PQC6 194 aa12.78□□□□□ -0.36
SHMT2-223ENST00000556689 AGRPO00253 132 aa12.78□□□□□ -0.36
SHMT2-223ENST00000556689 PRAMEF10O60809 474 aa12.78□□□□□ -0.36
SHMT2-223ENST00000556689 TMCC1O94876 653 aa12.78□□□□□ -0.36
SHMT2-223ENST00000556689 IGSF6O95976 241 aa12.78□□□□□ -0.36
SHMT2-223ENST00000556689 PNLIPP16233 465 aa12.78□□□□□ -0.36
SHMT2-223ENST00000556689 ITIH1P19827 911 aa12.78□□□□□ -0.36
SHMT2-223ENST00000556689 PTMSP20962 102 aa12.78□□□□□ -0.36
SHMT2-223ENST00000556689 MTIF2P46199 727 aaKnown RBP12.78□□□□□ -0.36
SHMT2-223ENST00000556689 ELP6Q0PNE2 266 aa12.78□□□□□ -0.36
SHMT2-223ENST00000556689 KIF26BQ2KJY2 2108 aa12.78□□□□□ -0.36
SHMT2-223ENST00000556689 INO80DQ53TQ3 878 aaPredicted RBP12.78□□□□□ -0.36
SHMT2-223ENST00000556689 MANEALQ5VSG8 457 aa12.78□□□□□ -0.36
SHMT2-223ENST00000556689 TAF3Q5VWG9 929 aa12.78□□□□□ -0.36
SHMT2-223ENST00000556689 OGFOD3Q6PK18 319 aa12.78□□□□□ -0.36
SHMT2-223ENST00000556689 VASH2Q86V25 355 aa12.78□□□□□ -0.36
SHMT2-223ENST00000556689 ZFAND4Q86XD8 727 aa12.78□□□□□ -0.36
SHMT2-223ENST00000556689 ZNF354CQ86Y25 554 aa12.78□□□□□ -0.36
SHMT2-223ENST00000556689 HCAR2Q8TDS4 363 aa12.78□□□□□ -0.36
SHMT2-223ENST00000556689 CASKIN2Q8WXE0 1202 aa12.78□□□□□ -0.36
SHMT2-223ENST00000556689 CPA5Q8WXQ8 436 aa12.78□□□□□ -0.36
SHMT2-223ENST00000556689 USP7Q93009 1102 aa12.78□□□□□ -0.36
SHMT2-223ENST00000556689 RBM15Q96T37 977 aaKnown RBP eCLIP12.78□□□□□ -0.36
SHMT2-223ENST00000556689 SLC25A18Q9H1K4 315 aa12.78□□□□□ -0.36
SHMT2-223ENST00000556689 KLQ9UEF7 1012 aa12.78□□□□□ -0.36
SHMT2-223ENST00000556689 COQ6Q9Y2Z9 468 aa12.78□□□□□ -0.36
SHMT2-223ENST00000556689 OR1A2Q9Y585 309 aa12.78□□□□□ -0.36
SHMT2-223ENST00000556689 FAM72CH0Y354 149 aa12.77□□□□□ -0.37
SHMT2-223ENST00000556689 PPFIA2O75334 1257 aa12.77□□□□□ -0.37
SHMT2-223ENST00000556689 LSM8O95777 96 aaKnown RBP12.77□□□□□ -0.37
SHMT2-223ENST00000556689 PLEKP08567 350 aaPredicted RBP12.77□□□□□ -0.37
SHMT2-223ENST00000556689 CD82P27701 267 aa12.77□□□□□ -0.37
SHMT2-223ENST00000556689 MAPK10P53779 464 aa12.77□□□□□ -0.37
SHMT2-223ENST00000556689 CYP4F2P78329 520 aa12.77□□□□□ -0.37
SHMT2-223ENST00000556689 ARHGEF7Q14155 803 aa12.77□□□□□ -0.37
SHMT2-223ENST00000556689 CDO1Q16878 200 aa12.77□□□□□ -0.37
SHMT2-223ENST00000556689 FAM72AQ5TYM5 149 aa12.77□□□□□ -0.37
SHMT2-223ENST00000556689 TMEM164Q5U3C3 297 aa12.77□□□□□ -0.37
SHMT2-223ENST00000556689 FAM72DQ6L9T8 149 aa12.77□□□□□ -0.37
SHMT2-223ENST00000556689 TAF8Q7Z7C8 310 aa12.77□□□□□ -0.37
SHMT2-223ENST00000556689 FAM72BQ86X60 149 aa12.77□□□□□ -0.37
SHMT2-223ENST00000556689 DTX1Q86Y01 620 aa12.77□□□□□ -0.37
SHMT2-223ENST00000556689 IRF2BP1Q8IU81 584 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms