RNA–Protein interactions for RNA: ENST00000553683.1

VRK1-202, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 247 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-202ENST00000553683 HOXC11O43248 304 aaPredicted RBP3.41□□□□□ -1.86
VRK1-202ENST00000553683 KRT86O43790 486 aa3.41□□□□□ -1.86
VRK1-202ENST00000553683 CH25HO95992 272 aa3.41□□□□□ -1.86
VRK1-202ENST00000553683 HEXAP06865 529 aa3.41□□□□□ -1.86
VRK1-202ENST00000553683 IGHV4-30-4P0DP06 118 aa3.41□□□□□ -1.86
VRK1-202ENST00000553683 SLC2A4P14672 509 aa3.41□□□□□ -1.86
VRK1-202ENST00000553683 DDX5P17844 614 aaKnown RBP3.41□□□□□ -1.86
VRK1-202ENST00000553683 RPL36AP83881 106 aaKnown RBP3.41□□□□□ -1.86
VRK1-202ENST00000553683 BNC1Q01954 994 aa3.41□□□□□ -1.86
VRK1-202ENST00000553683 BIRC3Q13489 604 aa3.41□□□□□ -1.86
VRK1-202ENST00000553683 CAPSQ13938 189 aa3.41□□□□□ -1.86
VRK1-202ENST00000553683 KRT81Q14533 505 aa3.41□□□□□ -1.86
VRK1-202ENST00000553683 BAK1Q16611 211 aa3.41□□□□□ -1.86
VRK1-202ENST00000553683 HIST2H2ACQ16777 129 aaPredicted RBP3.41□□□□□ -1.86
VRK1-202ENST00000553683 TMEM95Q3KNT9 176 aa3.41□□□□□ -1.86
VRK1-202ENST00000553683 C9orf57Q5W0N0 161 aa3.41□□□□□ -1.86
VRK1-202ENST00000553683 TADA2BQ86TJ2 420 aa3.41□□□□□ -1.86
VRK1-202ENST00000553683 FAM160B2Q86V87 743 aa3.41□□□□□ -1.86
VRK1-202ENST00000553683 CCDC105Q8IYK2 499 aa3.41□□□□□ -1.86
VRK1-202ENST00000553683 CPXCR1Q8N123 301 aa3.41□□□□□ -1.86
VRK1-202ENST00000553683 MORC4Q8TE76 937 aa3.41□□□□□ -1.86
VRK1-202ENST00000553683 TXNDC15Q96J42 360 aa3.41□□□□□ -1.86
VRK1-202ENST00000553683 MAELQ96JY0 434 aaKnown RBP3.41□□□□□ -1.86
VRK1-202ENST00000553683 ZNF385AQ96PM9 386 aaKnown RBP3.41□□□□□ -1.86
VRK1-202ENST00000553683 EYA3Q99504 573 aa3.41□□□□□ -1.86
VRK1-202ENST00000553683 INTS2Q9H0H0 1204 aaKnown RBP3.41□□□□□ -1.86
VRK1-202ENST00000553683 CYSLTR2Q9NS75 346 aa3.41□□□□□ -1.86
VRK1-202ENST00000553683 BABAM1Q9NWV8 329 aa3.41□□□□□ -1.86
VRK1-202ENST00000553683 IL1RAPL1Q9NZN1 696 aa3.41□□□□□ -1.86
VRK1-202ENST00000553683 LUZP4Q9P127 313 aa3.41□□□□□ -1.86
VRK1-202ENST00000553683 PGAP2Q9UHJ9 254 aa3.41□□□□□ -1.86
VRK1-202ENST00000553683 TBX20Q9UMR3 447 aa3.41□□□□□ -1.86
VRK1-202ENST00000553683 PCDHGB1Q9Y5G3 927 aa3.41□□□□□ -1.86
VRK1-202ENST00000553683 NFS1Q9Y697 457 aa3.41□□□□□ -1.86
VRK1-202ENST00000553683 DOCK7Q96N67 2140 aa3.41□□□□□ -1.86
VRK1-202ENST00000553683 MAGEA13PA6NCF6 341 aa3.4□□□□□ -1.87
VRK1-202ENST00000553683 SLC25A17O43808 307 aa3.4□□□□□ -1.87
VRK1-202ENST00000553683 KRT36O76013 467 aa3.4□□□□□ -1.87
VRK1-202ENST00000553683 HOXB5P09067 269 aa3.4□□□□□ -1.87
VRK1-202ENST00000553683 TFPIP10646 304 aa3.4□□□□□ -1.87
VRK1-202ENST00000553683 IRF1P10914 325 aa3.4□□□□□ -1.87
VRK1-202ENST00000553683 ITGAXP20702 1163 aa3.4□□□□□ -1.87
VRK1-202ENST00000553683 PPM1FP49593 454 aaPredicted RBP3.4□□□□□ -1.87
VRK1-202ENST00000553683 CXCR3P49682 368 aa3.4□□□□□ -1.87
VRK1-202ENST00000553683 CDH15P55291 814 aa3.4□□□□□ -1.87
VRK1-202ENST00000553683 RRP1P56182 461 aaKnown RBP3.4□□□□□ -1.87
VRK1-202ENST00000553683 EFNB1P98172 346 aa3.4□□□□□ -1.87
VRK1-202ENST00000553683 TRPC3Q13507 836 aa3.4□□□□□ -1.87
VRK1-202ENST00000553683 TAF11Q15544 211 aa3.4□□□□□ -1.87
VRK1-202ENST00000553683 KRT24Q2M2I5 525 aa3.4□□□□□ -1.87
VRK1-202ENST00000553683 SOWAHAQ2M3V2 549 aa3.4□□□□□ -1.87
VRK1-202ENST00000553683 ESCO2Q56NI9 601 aa3.4□□□□□ -1.87
VRK1-202ENST00000553683 PRAMEF19Q5SWL8 479 aa3.4□□□□□ -1.87
VRK1-202ENST00000553683 FAM69BQ5VUD6 431 aa3.4□□□□□ -1.87
VRK1-202ENST00000553683 WBP2NLQ6ICG8 309 aa3.4□□□□□ -1.87
VRK1-202ENST00000553683 TYW3Q6IPR3 259 aaKnown RBP3.4□□□□□ -1.87
VRK1-202ENST00000553683 ARMC9Q7Z3E5 817 aa3.4□□□□□ -1.87
VRK1-202ENST00000553683 ZNF354CQ86Y25 554 aa3.4□□□□□ -1.87
VRK1-202ENST00000553683 SMAP1Q8IYB5 467 aaPredicted RBP3.4□□□□□ -1.87
VRK1-202ENST00000553683 ZNF114Q8NC26 417 aa3.4□□□□□ -1.87
VRK1-202ENST00000553683 GJC3Q8NFK1 279 aa3.4□□□□□ -1.87
VRK1-202ENST00000553683 LMO3Q8TAP4 145 aa3.4□□□□□ -1.87
VRK1-202ENST00000553683 RUFY2Q8WXA3 655 aa3.4□□□□□ -1.87
VRK1-202ENST00000553683 ELP4Q96EB1 424 aa3.4□□□□□ -1.87
VRK1-202ENST00000553683 NOTCH4Q99466 2003 aa3.4□□□□□ -1.87
VRK1-202ENST00000553683 GPR63Q9BZJ6 419 aa3.4□□□□□ -1.87
VRK1-202ENST00000553683 ZNF556Q9HAH1 456 aa3.4□□□□□ -1.87
VRK1-202ENST00000553683 PEMTQ9UBM1 199 aa3.4□□□□□ -1.87
VRK1-202ENST00000553683 LRRFIP2Q9Y608 721 aaKnown RBP3.4□□□□□ -1.87
VRK1-202ENST00000553683 A3GALT2U3KPV4 340 aa3.4□□□□□ -1.87
VRK1-202ENST00000553683 ATXN2Q99700 1313 aaKnown RBP3.4□□□□□ -1.87
VRK1-202ENST00000553683 LOC102724159A0A0B4J2E5 919 aa3.39□□□□□ -1.87
VRK1-202ENST00000553683 LINC01553A4QN01 128 aa3.39□□□□□ -1.87
VRK1-202ENST00000553683 SRRM3A6NNA2 597 aaPredicted RBP3.39□□□□□ -1.87
VRK1-202ENST00000553683 HSPB2A8KAH6 182 aa3.39□□□□□ -1.87
VRK1-202ENST00000553683 SMTNL1A8MU46 457 aa3.39□□□□□ -1.87
VRK1-202ENST00000553683 TIMM23O14925 209 aa3.39□□□□□ -1.87
VRK1-202ENST00000553683 ZBTB11O95625 1053 aaPredicted RBP3.39□□□□□ -1.87
VRK1-202ENST00000553683 MT-CYBP00156 380 aaPredicted RBP3.39□□□□□ -1.87
VRK1-202ENST00000553683 URODP06132 367 aa3.39□□□□□ -1.87
VRK1-202ENST00000553683 SNRNP70P08621 437 aaKnown RBP3.39□□□□□ -1.87
VRK1-202ENST00000553683 CD72P21854 359 aa3.39□□□□□ -1.87
VRK1-202ENST00000553683 RUNX2Q13950 521 aa3.39□□□□□ -1.87
VRK1-202ENST00000553683 NEDD9Q14511 834 aa3.39□□□□□ -1.87
VRK1-202ENST00000553683 PWP2Q15269 919 aaKnown RBP3.39□□□□□ -1.87
VRK1-202ENST00000553683 HSPB2Q16082 182 aa3.39□□□□□ -1.87
VRK1-202ENST00000553683 CALCRLQ16602 461 aa3.39□□□□□ -1.87
VRK1-202ENST00000553683 NFIL3Q16649 462 aa3.39□□□□□ -1.87
VRK1-202ENST00000553683 C9orf50Q5SZB4 431 aa3.39□□□□□ -1.87
VRK1-202ENST00000553683 PLEKHA7Q6IQ23 1121 aa3.39□□□□□ -1.87
VRK1-202ENST00000553683 TMEM81Q6P7N7 255 aa3.39□□□□□ -1.87
VRK1-202ENST00000553683 CPLX2Q6PUV4 134 aaKnown RBP3.39□□□□□ -1.87
VRK1-202ENST00000553683 PRSS57Q6UWY2 283 aa3.39□□□□□ -1.87
VRK1-202ENST00000553683 RRM2BQ7LG56 351 aa3.39□□□□□ -1.87
VRK1-202ENST00000553683 SHFQ7M4L6 423 aa3.39□□□□□ -1.87
VRK1-202ENST00000553683 SCCPDHQ8NBX0 429 aa3.39□□□□□ -1.87
VRK1-202ENST00000553683 MYRIPQ8NFW9 859 aa3.39□□□□□ -1.87
VRK1-202ENST00000553683 SPATA3Q8NHX4 192 aa3.39□□□□□ -1.87
VRK1-202ENST00000553683 TMED6Q8WW62 240 aa3.39□□□□□ -1.87
VRK1-202ENST00000553683 FBXL8Q96CD0 374 aa3.39□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms