RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 MEA1Q16626 185 aa13.06□□□□□ -0.32
VPS29-211ENST00000553128 AMZ1Q400G9 498 aa13.06□□□□□ -0.32
VPS29-211ENST00000553128 MAP9Q49MG5 647 aa13.06□□□□□ -0.32
VPS29-211ENST00000553128 EFHC1Q5JVL4 640 aa13.06□□□□□ -0.32
VPS29-211ENST00000553128 ATXN7L2Q5T6C5 722 aaPredicted RBP13.06□□□□□ -0.32
VPS29-211ENST00000553128 TMEM164Q5U3C3 297 aa13.06□□□□□ -0.32
VPS29-211ENST00000553128 ERICH6BQ5W0A0 696 aa13.06□□□□□ -0.32
VPS29-211ENST00000553128 OGFOD3Q6PK18 319 aa13.06□□□□□ -0.32
VPS29-211ENST00000553128 TTC7BQ86TV6 843 aa13.06□□□□□ -0.32
VPS29-211ENST00000553128 NETO2Q8NC67 525 aa13.06□□□□□ -0.32
VPS29-211ENST00000553128 CCL4L1Q8NHW4 92 aa13.06□□□□□ -0.32
VPS29-211ENST00000553128 CXorf40AQ8TE69 158 aa13.06□□□□□ -0.32
VPS29-211ENST00000553128 RBM15Q96T37 977 aaKnown RBP eCLIP13.06□□□□□ -0.32
VPS29-211ENST00000553128 GTPBP4Q9BZE4 634 aaKnown RBP13.06□□□□□ -0.32
VPS29-211ENST00000553128 B3GNT4Q9C0J1 378 aa13.06□□□□□ -0.32
VPS29-211ENST00000553128 WDCPQ9H6R7 721 aa13.06□□□□□ -0.32
VPS29-211ENST00000553128 NDFIP2Q9NV92 336 aa13.06□□□□□ -0.32
VPS29-211ENST00000553128 CFAP45Q9UL16 551 aa13.06□□□□□ -0.32
VPS29-211ENST00000553128 B3GALT1Q9Y5Z6 326 aa13.06□□□□□ -0.32
VPS29-211ENST00000553128 TOR1BO14657 336 aa13.05□□□□□ -0.32
VPS29-211ENST00000553128 KRT7P08729 469 aa13.05□□□□□ -0.32
VPS29-211ENST00000553128 PNLIPP16233 465 aa13.05□□□□□ -0.32
VPS29-211ENST00000553128 GNA15P30679 374 aa13.05□□□□□ -0.32
VPS29-211ENST00000553128 PEX5P50542 639 aa13.05□□□□□ -0.32
VPS29-211ENST00000553128 GNA12Q03113 381 aa13.05□□□□□ -0.32
VPS29-211ENST00000553128 SLC20A2Q08357 652 aa13.05□□□□□ -0.32
VPS29-211ENST00000553128 ARHGEF7Q14155 803 aa13.05□□□□□ -0.32
VPS29-211ENST00000553128 INPP5AQ14642 412 aa13.05□□□□□ -0.32
VPS29-211ENST00000553128 LRRC14Q15048 493 aa13.05□□□□□ -0.32
VPS29-211ENST00000553128 C14orf28Q4W4Y0 310 aa13.05□□□□□ -0.32
VPS29-211ENST00000553128 ATP1A1-AS1Q5TC04 95 aa13.05□□□□□ -0.32
VPS29-211ENST00000553128 FOXR2Q6PJQ5 311 aa13.05□□□□□ -0.32
VPS29-211ENST00000553128 DRC7Q8IY82 874 aa13.05□□□□□ -0.32
VPS29-211ENST00000553128 CACNA2D3Q8IZS8 1091 aa13.05□□□□□ -0.32
VPS29-211ENST00000553128 EHBP1Q8NDI1 1231 aa13.05□□□□□ -0.32
VPS29-211ENST00000553128 FAM46DQ8NEK8 389 aa13.05□□□□□ -0.32
VPS29-211ENST00000553128 OR1E3Q8WZA6 343 aa13.05□□□□□ -0.32
VPS29-211ENST00000553128 TAAR9Q96RI9 348 aa13.05□□□□□ -0.32
VPS29-211ENST00000553128 NPY6RQ99463 290 aa13.05□□□□□ -0.32
VPS29-211ENST00000553128 TSG101Q99816 390 aa13.05□□□□□ -0.32
VPS29-211ENST00000553128 APOOQ9BUR5 198 aa13.05□□□□□ -0.32
VPS29-211ENST00000553128 MRPL40Q9NQ50 206 aaKnown RBP13.05□□□□□ -0.32
VPS29-211ENST00000553128 IGSF5Q9NSI5 407 aa13.05□□□□□ -0.32
VPS29-211ENST00000553128 KLQ9UEF7 1012 aa13.05□□□□□ -0.32
VPS29-211ENST00000553128 IGHV5-10-1A0A0J9YXX1 117 aa13.04□□□□□ -0.32
VPS29-211ENST00000553128 TMEM202A6NGA9 273 aa13.04□□□□□ -0.32
VPS29-211ENST00000553128 PRR19A6NJB7 356 aa13.04□□□□□ -0.32
VPS29-211ENST00000553128 ZNF891A8MT65 544 aaPredicted RBP13.04□□□□□ -0.32
VPS29-211ENST00000553128 MED7O43513 233 aa13.04□□□□□ -0.32
VPS29-211ENST00000553128 TIMP2P16035 220 aa13.04□□□□□ -0.32
VPS29-211ENST00000553128 OAS2P29728 719 aaKnown RBP13.04□□□□□ -0.32
VPS29-211ENST00000553128 MAZP56270 477 aaKnown RBP13.04□□□□□ -0.32
VPS29-211ENST00000553128 MTA1Q13330 715 aa13.04□□□□□ -0.32
VPS29-211ENST00000553128 PNOCQ13519 176 aa13.04□□□□□ -0.32
VPS29-211ENST00000553128 MYLK3Q32MK0 819 aa13.04□□□□□ -0.32
VPS29-211ENST00000553128 BRMS1LQ5PSV4 323 aa13.04□□□□□ -0.32
VPS29-211ENST00000553128 ATL3Q6DD88 541 aa13.04□□□□□ -0.32
VPS29-211ENST00000553128 GJB7Q6PEY0 223 aa13.04□□□□□ -0.32
VPS29-211ENST00000553128 LRRC31Q6UY01 552 aa13.04□□□□□ -0.32
VPS29-211ENST00000553128 GDPD4Q6W3E5 623 aa13.04□□□□□ -0.32
VPS29-211ENST00000553128 ZNF783Q6ZMS7 281 aa13.04□□□□□ -0.32
VPS29-211ENST00000553128 C11orf57Q6ZUT1 292 aaPredicted RBP13.04□□□□□ -0.32
VPS29-211ENST00000553128 TAF8Q7Z7C8 310 aa13.04□□□□□ -0.32
VPS29-211ENST00000553128 PIM3Q86V86 326 aa13.04□□□□□ -0.32
VPS29-211ENST00000553128 PLPP6Q8IY26 295 aa13.04□□□□□ -0.32
VPS29-211ENST00000553128 UNC5BQ8IZJ1 945 aa13.04□□□□□ -0.32
VPS29-211ENST00000553128 PLA2G15Q8NCC3 412 aa13.04□□□□□ -0.32
VPS29-211ENST00000553128 OR2AP1Q8NGE2 309 aa13.04□□□□□ -0.32
VPS29-211ENST00000553128 ARHGEF2Q92974 986 aaKnown RBP13.04□□□□□ -0.32
VPS29-211ENST00000553128 ART4Q93070 314 aa13.04□□□□□ -0.32
VPS29-211ENST00000553128 ISG20Q96AZ6 181 aaKnown RBP13.04□□□□□ -0.32
VPS29-211ENST00000553128 ARHGEF26Q96DR7 871 aa13.04□□□□□ -0.32
VPS29-211ENST00000553128 C1orf74Q96LT6 269 aa13.04□□□□□ -0.32
VPS29-211ENST00000553128 CCDC74BQ96LY2 380 aa13.04□□□□□ -0.32
VPS29-211ENST00000553128 TBCBQ99426 244 aa13.04□□□□□ -0.32
VPS29-211ENST00000553128 C1QTNF7Q9BXJ2 289 aa13.04□□□□□ -0.32
VPS29-211ENST00000553128 TMEM168Q9H0V1 697 aa13.04□□□□□ -0.32
VPS29-211ENST00000553128 CDH19Q9H159 772 aa13.04□□□□□ -0.32
VPS29-211ENST00000553128 FGF22Q9HCT0 170 aa13.04□□□□□ -0.32
VPS29-211ENST00000553128 PCDHGA3Q9Y5H0 932 aa13.04□□□□□ -0.32
VPS29-211ENST00000553128 CENPEQ02224 2701 aa13.04□□□□□ -0.32
VPS29-211ENST00000553128 FAM170AA1A519 330 aa13.03□□□□□ -0.32
VPS29-211ENST00000553128 TMEM110-MUSTN1A8MSY1 372 aa13.03□□□□□ -0.32
VPS29-211ENST00000553128 BECN2A8MW95 431 aa13.03□□□□□ -0.32
VPS29-211ENST00000553128 NUDT21O43809 227 aaKnown RBP13.03□□□□□ -0.32
VPS29-211ENST00000553128 RAD1O60671 282 aa13.03□□□□□ -0.32
VPS29-211ENST00000553128 CPNE6O95741 557 aa13.03□□□□□ -0.32
VPS29-211ENST00000553128 GSRP00390 522 aa13.03□□□□□ -0.32
VPS29-211ENST00000553128 TNFP01375 233 aa13.03□□□□□ -0.32
VPS29-211ENST00000553128 PCCBP05166 539 aa13.03□□□□□ -0.32
VPS29-211ENST00000553128 MPSTP25325 297 aa13.03□□□□□ -0.32
VPS29-211ENST00000553128 ALDH4A1P30038 563 aa13.03□□□□□ -0.32
VPS29-211ENST00000553128 SULT1E1P49888 294 aa13.03□□□□□ -0.32
VPS29-211ENST00000553128 RNASE9P60153 205 aaKnown RBP13.03□□□□□ -0.32
VPS29-211ENST00000553128 SLC6A3Q01959 620 aa13.03□□□□□ -0.32
VPS29-211ENST00000553128 CDC20Q12834 499 aa13.03□□□□□ -0.32
VPS29-211ENST00000553128 DEFB109BQ30KR1 87 aa13.03□□□□□ -0.32
VPS29-211ENST00000553128 PTPN20Q4JDL3 420 aa13.03□□□□□ -0.32
VPS29-211ENST00000553128 LACTB2Q53H82 288 aaPredicted RBP13.03□□□□□ -0.32
VPS29-211ENST00000553128 SPECC1LQ69YQ0 1117 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms