RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 DNAJC9Q8WXX5 260 aa5.63□□□□□ -1.51
LIMA1-215ENST00000552823 PTCD3Q96EY7 689 aaKnown RBP5.63□□□□□ -1.51
LIMA1-215ENST00000552823 PANX3Q96QZ0 392 aa5.63□□□□□ -1.51
LIMA1-215ENST00000552823 SLC22A12Q96S37 553 aa5.63□□□□□ -1.51
LIMA1-215ENST00000552823 SLC9A7Q96T83 725 aa5.63□□□□□ -1.51
LIMA1-215ENST00000552823 NAT9Q9BTE0 207 aa5.63□□□□□ -1.51
LIMA1-215ENST00000552823 CCDC68Q9H2F9 335 aa5.63□□□□□ -1.51
LIMA1-215ENST00000552823 RHOJQ9H4E5 214 aa5.63□□□□□ -1.51
LIMA1-215ENST00000552823 SEMA4BQ9NPR2 832 aaPredicted RBP5.63□□□□□ -1.51
LIMA1-215ENST00000552823 TLR8Q9NR97 1041 aaKnown RBP5.63□□□□□ -1.51
LIMA1-215ENST00000552823 RGS18Q9NS28 235 aa5.63□□□□□ -1.51
LIMA1-215ENST00000552823 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP5.63□□□□□ -1.51
LIMA1-215ENST00000552823 DLGAP2Q9P1A6 1054 aa5.63□□□□□ -1.51
LIMA1-215ENST00000552823 PCDHB8Q9UN66 801 aa5.63□□□□□ -1.51
LIMA1-215ENST00000552823 Q9Y3F1 56 aa5.63□□□□□ -1.51
LIMA1-215ENST00000552823 A0A1W2PQ67 120 aa5.63□□□□□ -1.51
LIMA1-215ENST00000552823 CCDC162PA2VCL2 907 aa5.63□□□□□ -1.51
LIMA1-215ENST00000552823 SUPT3HB4E1H0 165 aa5.63□□□□□ -1.51
LIMA1-215ENST00000552823 G3V2L1 256 aa5.63□□□□□ -1.51
LIMA1-215ENST00000552823 H0Y626 953 aa5.63□□□□□ -1.51
LIMA1-215ENST00000552823 UBXN8O00124 270 aa5.63□□□□□ -1.51
LIMA1-215ENST00000552823 TNFRSF10BO14763 440 aa5.63□□□□□ -1.51
LIMA1-215ENST00000552823 PEX1O43933 1283 aa5.63□□□□□ -1.51
LIMA1-215ENST00000552823 OR1I1O60431 355 aa5.63□□□□□ -1.51
LIMA1-215ENST00000552823 KATNA1O75449 491 aa5.63□□□□□ -1.51
LIMA1-215ENST00000552823 SUPT3HO75486 399 aa5.63□□□□□ -1.51
LIMA1-215ENST00000552823 GOT2P00505 430 aaKnown RBP5.63□□□□□ -1.51
LIMA1-215ENST00000552823 GALTP07902 379 aa5.63□□□□□ -1.51
LIMA1-215ENST00000552823 TACR2P21452 398 aa5.63□□□□□ -1.51
LIMA1-215ENST00000552823 FGFR3P22607 806 aa5.63□□□□□ -1.51
LIMA1-215ENST00000552823 PAX7P23759 505 aa5.63□□□□□ -1.51
LIMA1-215ENST00000552823 CCNCP24863 283 aa5.63□□□□□ -1.51
LIMA1-215ENST00000552823 ARNTP27540 789 aa5.63□□□□□ -1.51
LIMA1-215ENST00000552823 SLC6A4P31645 630 aa5.63□□□□□ -1.51
LIMA1-215ENST00000552823 RENBPP51606 427 aa5.63□□□□□ -1.51
LIMA1-215ENST00000552823 RAB10P61026 200 aa5.63□□□□□ -1.51
LIMA1-215ENST00000552823 MRPS22P82650 360 aaKnown RBP5.63□□□□□ -1.51
LIMA1-215ENST00000552823 KLF10Q13118 480 aa5.63□□□□□ -1.51
LIMA1-215ENST00000552823 RPS6KA2Q15349 733 aa5.63□□□□□ -1.51
LIMA1-215ENST00000552823 FAM83EQ2M2I3 478 aa5.63□□□□□ -1.51
LIMA1-215ENST00000552823 AGKQ53H12 422 aa5.63□□□□□ -1.51
LIMA1-215ENST00000552823 RNF219Q5W0B1 726 aaPredicted RBP5.63□□□□□ -1.51
LIMA1-215ENST00000552823 SEL1L3Q68CR1 1132 aa5.63□□□□□ -1.51
LIMA1-215ENST00000552823 LINC00523Q86TU6 105 aa5.63□□□□□ -1.51
LIMA1-215ENST00000552823 CACUL1Q86Y37 369 aa5.63□□□□□ -1.51
LIMA1-215ENST00000552823 TMPRSS6Q8IU80 811 aa5.63□□□□□ -1.51
LIMA1-215ENST00000552823 CENPLQ8N0S6 344 aaPredicted RBP5.63□□□□□ -1.51
LIMA1-215ENST00000552823 ARL14EPQ8N8R7 260 aaPredicted RBP5.63□□□□□ -1.51
LIMA1-215ENST00000552823 TRPC4APQ8TEL6 797 aa5.63□□□□□ -1.51
LIMA1-215ENST00000552823 NRG4Q8WWG1 115 aa5.63□□□□□ -1.51
LIMA1-215ENST00000552823 C7orf26Q96N11 449 aa5.63□□□□□ -1.51
LIMA1-215ENST00000552823 NSUN5Q96P11 429 aaKnown RBP5.63□□□□□ -1.51
LIMA1-215ENST00000552823 CINPQ9BW66 212 aaPredicted RBP5.63□□□□□ -1.51
LIMA1-215ENST00000552823 SEMA6AQ9H2E6 1030 aa5.63□□□□□ -1.51
LIMA1-215ENST00000552823 TNKS2Q9H2K2 1166 aa5.63□□□□□ -1.51
LIMA1-215ENST00000552823 CXorf56Q9H5V9 222 aa5.63□□□□□ -1.51
LIMA1-215ENST00000552823 TNFRSF12AQ9NP84 129 aa5.63□□□□□ -1.51
LIMA1-215ENST00000552823 NMRK1Q9NWW6 199 aa5.63□□□□□ -1.51
LIMA1-215ENST00000552823 MYOFQ9NZM1 2061 aa5.63□□□□□ -1.51
LIMA1-215ENST00000552823 ENO4A6NNW6 628 aa5.63□□□□□ -1.51
LIMA1-215ENST00000552823 M0QZQ0 153 aa5.63□□□□□ -1.51
LIMA1-215ENST00000552823 MTSS1O43312 755 aa5.63□□□□□ -1.51
LIMA1-215ENST00000552823 DNAJA2O60884 412 aa5.63□□□□□ -1.51
LIMA1-215ENST00000552823 CKMP06732 381 aa5.63□□□□□ -1.51
LIMA1-215ENST00000552823 RHOCP08134 193 aa5.63□□□□□ -1.51
LIMA1-215ENST00000552823 ALPIP09923 528 aa5.63□□□□□ -1.51
LIMA1-215ENST00000552823 COX4I1P13073 169 aa5.63□□□□□ -1.51
LIMA1-215ENST00000552823 TSHRP16473 764 aa5.63□□□□□ -1.51
LIMA1-215ENST00000552823 PAMP19021 973 aa5.63□□□□□ -1.51
LIMA1-215ENST00000552823 CORO1AP31146 461 aaKnown RBP5.63□□□□□ -1.51
LIMA1-215ENST00000552823 GGT5P36269 586 aa5.63□□□□□ -1.51
LIMA1-215ENST00000552823 CCNFP41002 786 aa5.63□□□□□ -1.51
LIMA1-215ENST00000552823 MAGEA6P43360 314 aa5.63□□□□□ -1.51
LIMA1-215ENST00000552823 HARS2P49590 506 aaKnown RBP5.63□□□□□ -1.51
LIMA1-215ENST00000552823 CDKN2DP55273 166 aa5.63□□□□□ -1.51
LIMA1-215ENST00000552823 OXCT1P55809 520 aa5.63□□□□□ -1.51
LIMA1-215ENST00000552823 SMAD3P84022 425 aaKnown RBP5.63□□□□□ -1.51
LIMA1-215ENST00000552823 CYP4F8P98187 520 aa5.63□□□□□ -1.51
LIMA1-215ENST00000552823 TLE2Q04725 743 aa5.63□□□□□ -1.51
LIMA1-215ENST00000552823 PDAP1Q13442 181 aaKnown RBP5.63□□□□□ -1.51
LIMA1-215ENST00000552823 FUT11Q495W5 492 aa5.63□□□□□ -1.51
LIMA1-215ENST00000552823 MAP3K21Q5TCX8 1036 aa5.63□□□□□ -1.51
LIMA1-215ENST00000552823 HECTD2Q5U5R9 776 aa5.63□□□□□ -1.51
LIMA1-215ENST00000552823 STEAP4Q687X5 459 aa5.63□□□□□ -1.51
LIMA1-215ENST00000552823 KCTD11Q693B1 232 aa5.63□□□□□ -1.51
LIMA1-215ENST00000552823 IZUMO2Q6UXV1 221 aa5.63□□□□□ -1.51
LIMA1-215ENST00000552823 ZNF296Q8WUU4 475 aaPredicted RBP5.63□□□□□ -1.51
LIMA1-215ENST00000552823 INPP5DQ92835 1189 aa5.63□□□□□ -1.51
LIMA1-215ENST00000552823 SPDL1Q96EA4 605 aa5.63□□□□□ -1.51
LIMA1-215ENST00000552823 TTPALQ9BTX7 342 aa5.63□□□□□ -1.51
LIMA1-215ENST00000552823 RNF38Q9H0F5 515 aa5.63□□□□□ -1.51
LIMA1-215ENST00000552823 CDH19Q9H159 772 aa5.63□□□□□ -1.51
LIMA1-215ENST00000552823 PRDM16Q9HAZ2 1276 aa5.63□□□□□ -1.51
LIMA1-215ENST00000552823 CSNK1G1Q9HCP0 422 aa5.63□□□□□ -1.51
LIMA1-215ENST00000552823 SSU72Q9NP77 194 aaKnown RBP5.63□□□□□ -1.51
LIMA1-215ENST00000552823 FETUBQ9UGM5 382 aa5.63□□□□□ -1.51
LIMA1-215ENST00000552823 VPS28Q9UK41 221 aa5.63□□□□□ -1.51
LIMA1-215ENST00000552823 PCDHB9Q9Y5E1 797 aa5.63□□□□□ -1.51
LIMA1-215ENST00000552823 ZSWIM8A7E2V4 1837 aa5.62□□□□□ -1.51
LIMA1-215ENST00000552823 MYOCOSA0A1B0GUC4 107 aa5.62□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms