RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 AAR2Q9Y312 384 aaKnown RBP7.56□□□□□ -1.2
LIMA1-213ENST00000552720 OR51F1A6NGY5 319 aa7.56□□□□□ -1.2
LIMA1-213ENST00000552720 ARL5CA6NH57 179 aa7.56□□□□□ -1.2
LIMA1-213ENST00000552720 A8MT66 165 aa7.56□□□□□ -1.2
LIMA1-213ENST00000552720 HAS3O00219 553 aa7.56□□□□□ -1.2
LIMA1-213ENST00000552720 VILLO15195 856 aa7.56□□□□□ -1.2
LIMA1-213ENST00000552720 AP1G1O43747 822 aa7.56□□□□□ -1.2
LIMA1-213ENST00000552720 TADA2AO75478 443 aa7.56□□□□□ -1.2
LIMA1-213ENST00000552720 GJB3O75712 270 aa7.56□□□□□ -1.2
LIMA1-213ENST00000552720 TRPA1O75762 1119 aa7.56□□□□□ -1.2
LIMA1-213ENST00000552720 CCNCP24863 283 aa7.56□□□□□ -1.2
LIMA1-213ENST00000552720 YWHAQP27348 245 aa7.56□□□□□ -1.2
LIMA1-213ENST00000552720 HADHAP40939 763 aa7.56□□□□□ -1.2
LIMA1-213ENST00000552720 CD151P48509 253 aa7.56□□□□□ -1.2
LIMA1-213ENST00000552720 PSME3P61289 254 aa7.56□□□□□ -1.2
LIMA1-213ENST00000552720 LSAMPQ13449 338 aa7.56□□□□□ -1.2
LIMA1-213ENST00000552720 TECRLQ5HYJ1 363 aa7.56□□□□□ -1.2
LIMA1-213ENST00000552720 ARMC3Q5W041 872 aa7.56□□□□□ -1.2
LIMA1-213ENST00000552720 AGMOQ6ZNB7 445 aa7.56□□□□□ -1.2
LIMA1-213ENST00000552720 KLHDC8BQ8IXV7 354 aa7.56□□□□□ -1.2
LIMA1-213ENST00000552720 C2CD4AQ8NCU7 369 aaPredicted RBP7.56□□□□□ -1.2
LIMA1-213ENST00000552720 OR10T2Q8NGX3 314 aa7.56□□□□□ -1.2
LIMA1-213ENST00000552720 CEP70Q8NHQ1 597 aa7.56□□□□□ -1.2
LIMA1-213ENST00000552720 GRIN3AQ8TCU5 1115 aa7.56□□□□□ -1.2
LIMA1-213ENST00000552720 LRTOMTQ8WZ04 291 aa7.56□□□□□ -1.2
LIMA1-213ENST00000552720 FCRL2Q96LA5 508 aaPredicted RBP7.56□□□□□ -1.2
LIMA1-213ENST00000552720 TSGA13Q96PP4 275 aa7.56□□□□□ -1.2
LIMA1-213ENST00000552720 KLHL5Q96PQ7 755 aa7.56□□□□□ -1.2
LIMA1-213ENST00000552720 CRISPLD2Q9H0B8 497 aa7.56□□□□□ -1.2
LIMA1-213ENST00000552720 CSNK1G1Q9HCP0 422 aa7.56□□□□□ -1.2
LIMA1-213ENST00000552720 NSMCE4AQ9NXX6 385 aa7.56□□□□□ -1.2
LIMA1-213ENST00000552720 NCKIPSDQ9NZQ3 722 aa7.56□□□□□ -1.2
LIMA1-213ENST00000552720 GIMAP2Q9UG22 337 aa7.56□□□□□ -1.2
LIMA1-213ENST00000552720 CPA4Q9UI42 421 aa7.56□□□□□ -1.2
LIMA1-213ENST00000552720 VPS28Q9UK41 221 aa7.56□□□□□ -1.2
LIMA1-213ENST00000552720 CDH9Q9ULB4 789 aa7.56□□□□□ -1.2
LIMA1-213ENST00000552720 ST3GAL5Q9UNP4 418 aa7.56□□□□□ -1.2
LIMA1-213ENST00000552720 GBF1Q92538 1859 aa7.56□□□□□ -1.2
LIMA1-213ENST00000552720 GREB1Q4ZG55 1949 aa7.55□□□□□ -1.2
LIMA1-213ENST00000552720 C17orf102A2RUQ5 167 aa7.55□□□□□ -1.2
LIMA1-213ENST00000552720 C7orf72A4D263 438 aa7.55□□□□□ -1.2
LIMA1-213ENST00000552720 MYADML2A6NDP7 307 aa7.55□□□□□ -1.2
LIMA1-213ENST00000552720 PRORSD1PA6NEY8 169 aa7.55□□□□□ -1.2
LIMA1-213ENST00000552720 CCDC160A6NGH7 325 aa7.55□□□□□ -1.2
LIMA1-213ENST00000552720 C9JVG2 144 aa7.55□□□□□ -1.2
LIMA1-213ENST00000552720 SLCO1B7G3V0H7 640 aa7.55□□□□□ -1.2
LIMA1-213ENST00000552720 UBFD1O14562 309 aaKnown RBP7.55□□□□□ -1.2
LIMA1-213ENST00000552720 MATN3O15232 486 aa7.55□□□□□ -1.2
LIMA1-213ENST00000552720 IRAK2O43187 625 aa7.55□□□□□ -1.2
LIMA1-213ENST00000552720 CLPTM1O96005 669 aa7.55□□□□□ -1.2
LIMA1-213ENST00000552720 IGLV3-25P01717 112 aa7.55□□□□□ -1.2
LIMA1-213ENST00000552720 ITGB1P05556 798 aa7.55□□□□□ -1.2
LIMA1-213ENST00000552720 OR4Q2P0C623 313 aa7.55□□□□□ -1.2
LIMA1-213ENST00000552720 ZNF865P0CJ78 1059 aaPredicted RBP7.55□□□□□ -1.2
LIMA1-213ENST00000552720 CCDC166P0CW27 439 aa7.55□□□□□ -1.2
LIMA1-213ENST00000552720 COL6A2P12110 1019 aa7.55□□□□□ -1.2
LIMA1-213ENST00000552720 CALRP27797 417 aaKnown RBP7.55□□□□□ -1.2
LIMA1-213ENST00000552720 SLC12A2P55011 1212 aa7.55□□□□□ -1.2
LIMA1-213ENST00000552720 NME5P56597 212 aa7.55□□□□□ -1.2
LIMA1-213ENST00000552720 YBX1P67809 324 aaKnown RBP7.55□□□□□ -1.2
LIMA1-213ENST00000552720 CACNB2Q08289 660 aaPredicted RBP7.55□□□□□ -1.2
LIMA1-213ENST00000552720 UGP2Q16851 508 aa7.55□□□□□ -1.2
LIMA1-213ENST00000552720 MYLK3Q32MK0 819 aa7.55□□□□□ -1.2
LIMA1-213ENST00000552720 LARP7Q4G0J3 582 aaKnown RBP eCLIP7.55□□□□□ -1.2
LIMA1-213ENST00000552720 AGKQ53H12 422 aa7.55□□□□□ -1.2
LIMA1-213ENST00000552720 C9orf131Q5VYM1 1079 aa7.55□□□□□ -1.2
LIMA1-213ENST00000552720 NEPROQ6NW34 567 aa7.55□□□□□ -1.2
LIMA1-213ENST00000552720 TMEM207Q6UWW9 146 aa7.55□□□□□ -1.2
LIMA1-213ENST00000552720 RANBP10Q6VN20 620 aa7.55□□□□□ -1.2
LIMA1-213ENST00000552720 CYHR1Q6ZMK1 362 aa7.55□□□□□ -1.2
LIMA1-213ENST00000552720 SETD3Q86TU7 594 aaPredicted RBP7.55□□□□□ -1.2
LIMA1-213ENST00000552720 PIM3Q86V86 326 aa7.55□□□□□ -1.2
LIMA1-213ENST00000552720 EXT2Q93063 718 aa7.55□□□□□ -1.2
LIMA1-213ENST00000552720 SLCO4A1Q96BD0 722 aa7.55□□□□□ -1.2
LIMA1-213ENST00000552720 LRCH3Q96II8 777 aa7.55□□□□□ -1.2
LIMA1-213ENST00000552720 MPP4Q96JB8 637 aa7.55□□□□□ -1.2
LIMA1-213ENST00000552720 MRPL57Q9BQC6 102 aaKnown RBP7.55□□□□□ -1.2
LIMA1-213ENST00000552720 NMUR1Q9HB89 426 aa7.55□□□□□ -1.2
LIMA1-213ENST00000552720 ARHGEF38Q9NXL2 777 aa7.55□□□□□ -1.2
LIMA1-213ENST00000552720 RAB26Q9ULW5 256 aa7.55□□□□□ -1.2
LIMA1-213ENST00000552720 PTGDR2Q9Y5Y4 395 aa7.55□□□□□ -1.2
LIMA1-213ENST00000552720 PTCH2Q9Y6C5 1203 aa7.55□□□□□ -1.2
LIMA1-213ENST00000552720 TRIM38O00635 465 aa7.55□□□□□ -1.2
LIMA1-213ENST00000552720 PPP6CO00743 305 aa7.55□□□□□ -1.2
LIMA1-213ENST00000552720 NPHS1O60500 1241 aa7.55□□□□□ -1.2
LIMA1-213ENST00000552720 ANXA9O76027 345 aa7.55□□□□□ -1.2
LIMA1-213ENST00000552720 B3GAT3O94766 335 aa7.55□□□□□ -1.2
LIMA1-213ENST00000552720 ATP5F1P24539 256 aaPredicted RBP7.55□□□□□ -1.2
LIMA1-213ENST00000552720 RPL10P27635 214 aaKnown RBP7.55□□□□□ -1.2
LIMA1-213ENST00000552720 PRKAA2P54646 552 aa7.55□□□□□ -1.2
LIMA1-213ENST00000552720 WNT3AP56704 352 aa7.55□□□□□ -1.2
LIMA1-213ENST00000552720 COG7P83436 770 aa7.55□□□□□ -1.2
LIMA1-213ENST00000552720 EIF4EBP2Q13542 120 aaPredicted RBP7.55□□□□□ -1.2
LIMA1-213ENST00000552720 LRP8Q14114 963 aa7.55□□□□□ -1.2
LIMA1-213ENST00000552720 FASTKQ14296 549 aaKnown RBP7.55□□□□□ -1.2
LIMA1-213ENST00000552720 PTPRCAPQ14761 206 aa7.55□□□□□ -1.2
LIMA1-213ENST00000552720 HERC3Q15034 1050 aa7.55□□□□□ -1.2
LIMA1-213ENST00000552720 UPP1Q16831 310 aa7.55□□□□□ -1.2
LIMA1-213ENST00000552720 MGAT5BQ3V5L5 792 aa7.55□□□□□ -1.2
LIMA1-213ENST00000552720 SDHAF4Q5VUM1 108 aa7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms