RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 TPI1P60174 286 aa5.47□□□□□ -1.53
LIMA1-212ENST00000552491 COG7P83436 770 aa5.47□□□□□ -1.53
LIMA1-212ENST00000552491 LPIN1Q14693 890 aa5.47□□□□□ -1.53
LIMA1-212ENST00000552491 AGKQ53H12 422 aa5.47□□□□□ -1.53
LIMA1-212ENST00000552491 ZNF789Q5FWF6 425 aa5.47□□□□□ -1.53
LIMA1-212ENST00000552491 FBXO47Q5MNV8 452 aa5.47□□□□□ -1.53
LIMA1-212ENST00000552491 RBM20Q5T481 1227 aaKnown RBP5.47□□□□□ -1.53
LIMA1-212ENST00000552491 DENND5AQ6IQ26 1287 aa5.47□□□□□ -1.53
LIMA1-212ENST00000552491 C8orf82Q6P1X6 216 aaPredicted RBP5.47□□□□□ -1.53
LIMA1-212ENST00000552491 CLEC20AQ6ZU45 233 aa5.47□□□□□ -1.53
LIMA1-212ENST00000552491 TRIM74Q86UV6 250 aa5.47□□□□□ -1.53
LIMA1-212ENST00000552491 TRIM73Q86UV7 250 aa5.47□□□□□ -1.53
LIMA1-212ENST00000552491 ERI1Q8IV48 349 aaKnown RBP5.47□□□□□ -1.53
LIMA1-212ENST00000552491 FAM47BQ8NA70 645 aa5.47□□□□□ -1.53
LIMA1-212ENST00000552491 B3GALNT2Q8NCR0 500 aa5.47□□□□□ -1.53
LIMA1-212ENST00000552491 SH3RF2Q8TEC5 729 aa5.47□□□□□ -1.53
LIMA1-212ENST00000552491 CANT1Q8WVQ1 401 aa5.47□□□□□ -1.53
LIMA1-212ENST00000552491 TEKT5Q96M29 485 aa5.47□□□□□ -1.53
LIMA1-212ENST00000552491 TSNARE1Q96NA8 513 aa5.47□□□□□ -1.53
LIMA1-212ENST00000552491 UHRF1Q96T88 793 aaPredicted RBP5.47□□□□□ -1.53
LIMA1-212ENST00000552491 MPHOSPH6Q99547 160 aaKnown RBP5.47□□□□□ -1.53
LIMA1-212ENST00000552491 C16orf70Q9BSU1 422 aa5.47□□□□□ -1.53
LIMA1-212ENST00000552491 DUSP16Q9BY84 665 aa5.47□□□□□ -1.53
LIMA1-212ENST00000552491 ULBP1Q9BZM6 244 aa5.47□□□□□ -1.53
LIMA1-212ENST00000552491 DNAI2Q9GZS0 605 aa5.47□□□□□ -1.53
LIMA1-212ENST00000552491 MUC3BQ9H195 1237 aa5.47□□□□□ -1.53
LIMA1-212ENST00000552491 UNC93B1Q9H1C4 597 aa5.47□□□□□ -1.53
LIMA1-212ENST00000552491 POMKQ9H5K3 350 aa5.47□□□□□ -1.53
LIMA1-212ENST00000552491 MRPL40Q9NQ50 206 aaKnown RBP5.47□□□□□ -1.53
LIMA1-212ENST00000552491 PIM2Q9P1W9 311 aa5.47□□□□□ -1.53
LIMA1-212ENST00000552491 SARDHQ9UL12 918 aa5.47□□□□□ -1.53
LIMA1-212ENST00000552491 TDRKHQ9Y2W6 561 aaKnown RBP5.47□□□□□ -1.53
LIMA1-212ENST00000552491 ZFC3H1O60293 1989 aaKnown RBP5.46□□□□□ -1.53
LIMA1-212ENST00000552491 C11orf97A0A1B0GVM6 126 aaPredicted RBP5.46□□□□□ -1.54
LIMA1-212ENST00000552491 ATP6AP2A0A1C7CYW4 349 aa5.46□□□□□ -1.54
LIMA1-212ENST00000552491 FAM149AA5PLN7 773 aa5.46□□□□□ -1.54
LIMA1-212ENST00000552491 UBFD1O14562 309 aaKnown RBP5.46□□□□□ -1.54
LIMA1-212ENST00000552491 NPHS1O60500 1241 aa5.46□□□□□ -1.54
LIMA1-212ENST00000552491 ATP6AP2O75787 350 aa5.46□□□□□ -1.54
LIMA1-212ENST00000552491 CLIC3O95833 236 aa5.46□□□□□ -1.54
LIMA1-212ENST00000552491 COL6A2P12110 1019 aa5.46□□□□□ -1.54
LIMA1-212ENST00000552491 SLC7A1P30825 629 aa5.46□□□□□ -1.54
LIMA1-212ENST00000552491 SLC1A2P43004 574 aa5.46□□□□□ -1.54
LIMA1-212ENST00000552491 TKTL1P51854 596 aa5.46□□□□□ -1.54
LIMA1-212ENST00000552491 MAP3K7CLP57077 242 aa5.46□□□□□ -1.54
LIMA1-212ENST00000552491 RAB10P61026 200 aa5.46□□□□□ -1.54
LIMA1-212ENST00000552491 PRAMEP78395 509 aa5.46□□□□□ -1.54
LIMA1-212ENST00000552491 PRKCQQ04759 706 aa5.46□□□□□ -1.54
LIMA1-212ENST00000552491 GALNT2Q10471 571 aa5.46□□□□□ -1.54
LIMA1-212ENST00000552491 CDH17Q12864 832 aa5.46□□□□□ -1.54
LIMA1-212ENST00000552491 TMED1Q13445 227 aa5.46□□□□□ -1.54
LIMA1-212ENST00000552491 FASTKQ14296 549 aaKnown RBP5.46□□□□□ -1.54
LIMA1-212ENST00000552491 TTLL4Q14679 1199 aa5.46□□□□□ -1.54
LIMA1-212ENST00000552491 NOMO2Q5JPE7 1267 aa5.46□□□□□ -1.54
LIMA1-212ENST00000552491 IL31Q6EBC2 164 aa5.46□□□□□ -1.54
LIMA1-212ENST00000552491 ITPRIPL1Q6GPH6 555 aa5.46□□□□□ -1.54
LIMA1-212ENST00000552491 TAPT1Q6NXT6 567 aa5.46□□□□□ -1.54
LIMA1-212ENST00000552491 PKN3Q6P5Z2 889 aa5.46□□□□□ -1.54
LIMA1-212ENST00000552491 TREML4Q6UXN2 200 aa5.46□□□□□ -1.54
LIMA1-212ENST00000552491 LIMS2Q7Z4I7 341 aa5.46□□□□□ -1.54
LIMA1-212ENST00000552491 RETREG3Q86VR2 466 aa5.46□□□□□ -1.54
LIMA1-212ENST00000552491 RNF135Q8IUD6 432 aa5.46□□□□□ -1.54
LIMA1-212ENST00000552491 EPHX4Q8IUS5 362 aa5.46□□□□□ -1.54
LIMA1-212ENST00000552491 APOBEC3FQ8IUX4 373 aaKnown RBP5.46□□□□□ -1.54
LIMA1-212ENST00000552491 FUNDC1Q8IVP5 155 aa5.46□□□□□ -1.54
LIMA1-212ENST00000552491 LZTR1Q8N653 840 aa5.46□□□□□ -1.54
LIMA1-212ENST00000552491 BEST2Q8NFU1 509 aa5.46□□□□□ -1.54
LIMA1-212ENST00000552491 MIPOL1Q8TD10 442 aa5.46□□□□□ -1.54
LIMA1-212ENST00000552491 TOP1MTQ969P6 601 aa5.46□□□□□ -1.54
LIMA1-212ENST00000552491 PPP1R14BQ96C90 147 aa5.46□□□□□ -1.54
LIMA1-212ENST00000552491 HDAC11Q96DB2 347 aa5.46□□□□□ -1.54
LIMA1-212ENST00000552491 SLC45A3Q96JT2 553 aa5.46□□□□□ -1.54
LIMA1-212ENST00000552491 RPL10LQ96L21 214 aaKnown RBP5.46□□□□□ -1.54
LIMA1-212ENST00000552491 OLFM1Q99784 485 aa5.46□□□□□ -1.54
LIMA1-212ENST00000552491 OSBPL11Q9BXB4 747 aa5.46□□□□□ -1.54
LIMA1-212ENST00000552491 SNX25Q9H3E2 840 aa5.46□□□□□ -1.54
LIMA1-212ENST00000552491 PLEKHA5Q9HAU0 1116 aa5.46□□□□□ -1.54
LIMA1-212ENST00000552491 IGSF5Q9NSI5 407 aa5.46□□□□□ -1.54
LIMA1-212ENST00000552491 RYDENQ9NUL5 291 aaKnown RBP5.46□□□□□ -1.54
LIMA1-212ENST00000552491 NSMCE4AQ9NXX6 385 aa5.46□□□□□ -1.54
LIMA1-212ENST00000552491 TMEM181Q9P2C4 612 aa5.46□□□□□ -1.54
LIMA1-212ENST00000552491 GIMAP2Q9UG22 337 aa5.46□□□□□ -1.54
LIMA1-212ENST00000552491 CDC14AQ9UNH5 594 aa5.46□□□□□ -1.54
LIMA1-212ENST00000552491 MYRFQ9Y2G1 1151 aa5.46□□□□□ -1.54
LIMA1-212ENST00000552491 DERAQ9Y315 318 aa5.46□□□□□ -1.54
LIMA1-212ENST00000552491 OTOFQ9HC10 1997 aa5.46□□□□□ -1.54
LIMA1-212ENST00000552491 SMIM28A0A1B0GU29 152 aa5.46□□□□□ -1.54
LIMA1-212ENST00000552491 HEATR9A2RTY3 570 aa5.46□□□□□ -1.54
LIMA1-212ENST00000552491 SAC3D1A6NKF1 404 aa5.46□□□□□ -1.54
LIMA1-212ENST00000552491 A8MT66 165 aa5.46□□□□□ -1.54
LIMA1-212ENST00000552491 FAM155AB1AL88 458 aaPredicted RBP5.46□□□□□ -1.54
LIMA1-212ENST00000552491 C9JVG2 144 aa5.46□□□□□ -1.54
LIMA1-212ENST00000552491 FZD9O00144 591 aa5.46□□□□□ -1.54
LIMA1-212ENST00000552491 PSMD12O00232 456 aaPredicted RBP5.46□□□□□ -1.54
LIMA1-212ENST00000552491 LRIG2O94898 1065 aa5.46□□□□□ -1.54
LIMA1-212ENST00000552491 ALDOCP09972 364 aaKnown RBP5.46□□□□□ -1.54
LIMA1-212ENST00000552491 TFPTP0C1Z6 253 aa5.46□□□□□ -1.54
LIMA1-212ENST00000552491 STMN1P16949 149 aa5.46□□□□□ -1.54
LIMA1-212ENST00000552491 YBX3P16989 372 aaKnown RBP eCLIP5.46□□□□□ -1.54
LIMA1-212ENST00000552491 NPR3P17342 541 aa5.46□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms