RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 TBC1D4O60343 1298 aa16.39■□□□□ 0.21
CUX1-213ENST00000549414 F2P00734 622 aa16.39■□□□□ 0.21
CUX1-213ENST00000549414 PIK3R1P27986 724 aa16.39■□□□□ 0.21
CUX1-213ENST00000549414 ZNF132P52740 706 aa16.39■□□□□ 0.21
CUX1-213ENST00000549414 FRG1Q14331 258 aaKnown RBP16.39■□□□□ 0.21
CUX1-213ENST00000549414 FAM45BPQ6NSW5 357 aa16.39■□□□□ 0.21
CUX1-213ENST00000549414 DNAJB14Q8TBM8 379 aa16.39■□□□□ 0.21
CUX1-213ENST00000549414 FAM45AQ8TCE6 357 aa16.39■□□□□ 0.21
CUX1-213ENST00000549414 EBF4Q9BQW3 602 aa16.39■□□□□ 0.21
CUX1-213ENST00000549414 GATA5Q9BWX5 397 aaPredicted RBP16.39■□□□□ 0.21
CUX1-213ENST00000549414 PDLIM7Q9NR12 457 aa16.39■□□□□ 0.21
CUX1-213ENST00000549414 ZNF212Q9UDV6 495 aa16.39■□□□□ 0.21
CUX1-213ENST00000549414 ZNF180Q9UJW8 692 aa16.39■□□□□ 0.21
CUX1-213ENST00000549414 RGSL1A5PLK6 1076 aa16.38■□□□□ 0.21
CUX1-213ENST00000549414 CLPTM1O96005 669 aa16.38■□□□□ 0.21
CUX1-213ENST00000549414 CTNNB1P35222 781 aa16.38■□□□□ 0.21
CUX1-213ENST00000549414 GPR158Q5T848 1215 aa16.38■□□□□ 0.21
CUX1-213ENST00000549414 LRRC49Q8IUZ0 686 aa16.38■□□□□ 0.21
CUX1-213ENST00000549414 SPPL2BQ8TCT7 592 aa16.38■□□□□ 0.21
CUX1-213ENST00000549414 HMCESQ96FZ2 354 aa16.38■□□□□ 0.21
CUX1-213ENST00000549414 TEKT5Q96M29 485 aa16.38■□□□□ 0.21
CUX1-213ENST00000549414 TSPAN18Q96SJ8 248 aa16.38■□□□□ 0.21
CUX1-213ENST00000549414 NPAS2Q99743 824 aa16.38■□□□□ 0.21
CUX1-213ENST00000549414 YIPF2Q9BWQ6 316 aa16.38■□□□□ 0.21
CUX1-213ENST00000549414 MMADHCQ9H3L0 296 aaPredicted RBP16.38■□□□□ 0.21
CUX1-213ENST00000549414 POLG2Q9UHN1 485 aa16.38■□□□□ 0.21
CUX1-213ENST00000549414 SORCS3Q9UPU3 1222 aa16.38■□□□□ 0.21
CUX1-213ENST00000549414 C9JVG2 144 aa16.38■□□□□ 0.21
CUX1-213ENST00000549414 AOC2O75106 756 aa16.38■□□□□ 0.21
CUX1-213ENST00000549414 IQCF3P0C7M6 154 aa16.38■□□□□ 0.21
CUX1-213ENST00000549414 PCNAP12004 261 aa16.38■□□□□ 0.21
CUX1-213ENST00000549414 HGFP14210 728 aa16.38■□□□□ 0.21
CUX1-213ENST00000549414 INCA1Q0VD86 236 aa16.38■□□□□ 0.21
CUX1-213ENST00000549414 PPM1LQ5SGD2 360 aa16.38■□□□□ 0.21
CUX1-213ENST00000549414 ZNF697Q5TEC3 545 aa16.38■□□□□ 0.21
CUX1-213ENST00000549414 OR4L1Q8NH43 312 aa16.38■□□□□ 0.21
CUX1-213ENST00000549414 FAXDC2Q96IV6 333 aa16.38■□□□□ 0.21
CUX1-213ENST00000549414 CERS4Q9HA82 394 aa16.38■□□□□ 0.21
CUX1-213ENST00000549414 ARL15Q9NXU5 204 aa16.38■□□□□ 0.21
CUX1-213ENST00000549414 PCDHGC4Q9Y5F7 938 aa16.38■□□□□ 0.21
CUX1-213ENST00000549414 EME2A4GXA9 379 aaPredicted RBP16.38■□□□□ 0.21
CUX1-213ENST00000549414 CCDC154A6NI56 674 aa16.38■□□□□ 0.21
CUX1-213ENST00000549414 DMC1Q14565 340 aa16.38■□□□□ 0.21
CUX1-213ENST00000549414 HORMAD1Q86X24 394 aa16.38■□□□□ 0.21
CUX1-213ENST00000549414 ZNF781Q8N8C0 355 aa16.38■□□□□ 0.21
CUX1-213ENST00000549414 OTULINQ96BN8 352 aa16.38■□□□□ 0.21
CUX1-213ENST00000549414 RNF145Q96MT1 663 aa16.38■□□□□ 0.21
CUX1-213ENST00000549414 EMILIN2Q9BXX0 1053 aa16.38■□□□□ 0.21
CUX1-213ENST00000549414 TMEM161AQ9NX61 479 aa16.38■□□□□ 0.21
CUX1-213ENST00000549414 CITO14578 2027 aa16.38■□□□□ 0.21
CUX1-213ENST00000549414 CEP290O15078 2479 aa16.38■□□□□ 0.21
CUX1-213ENST00000549414 OR6C75A6NL08 312 aa16.37■□□□□ 0.21
CUX1-213ENST00000549414 ZNF839A8K0R7 811 aa16.37■□□□□ 0.21
CUX1-213ENST00000549414 LINC00032P0C843 101 aa16.37■□□□□ 0.21
CUX1-213ENST00000549414 PSME3P61289 254 aa16.37■□□□□ 0.21
CUX1-213ENST00000549414 TRAF2Q12933 501 aa16.37■□□□□ 0.21
CUX1-213ENST00000549414 HPS6Q86YV9 775 aa16.37■□□□□ 0.21
CUX1-213ENST00000549414 ZBED3Q96IU2 234 aaPredicted RBP16.37■□□□□ 0.21
CUX1-213ENST00000549414 SPATA16Q9BXB7 569 aa16.37■□□□□ 0.21
CUX1-213ENST00000549414 CYLDQ9NQC7 956 aa16.37■□□□□ 0.21
CUX1-213ENST00000549414 MRPL17Q9NRX2 175 aaKnown RBP16.37■□□□□ 0.21
CUX1-213ENST00000549414 LBPP18428 481 aa16.37■□□□□ 0.21
CUX1-213ENST00000549414 KLF10Q13118 480 aa16.37■□□□□ 0.21
CUX1-213ENST00000549414 GRB14Q14449 540 aa16.37■□□□□ 0.21
CUX1-213ENST00000549414 KCNJ11Q14654 390 aa16.37■□□□□ 0.21
CUX1-213ENST00000549414 TCEA2Q15560 299 aa16.37■□□□□ 0.21
CUX1-213ENST00000549414 PRSS55Q6UWB4 352 aaPredicted RBP16.37■□□□□ 0.21
CUX1-213ENST00000549414 FAM151BQ6UXP7 276 aa16.37■□□□□ 0.21
CUX1-213ENST00000549414 CCDC81Q6ZN84 652 aa16.37■□□□□ 0.21
CUX1-213ENST00000549414 RINLQ6ZS11 566 aa16.37■□□□□ 0.21
CUX1-213ENST00000549414 NSMCE2Q96MF7 247 aa16.37■□□□□ 0.21
CUX1-213ENST00000549414 XRN2Q9H0D6 950 aaKnown RBP eCLIP16.37■□□□□ 0.218e-7■■■□□ 18
CUX1-213ENST00000549414 R3HDMLQ9H3Y0 253 aa16.37■□□□□ 0.21
CUX1-213ENST00000549414 CNTN3Q9P232 1028 aa16.37■□□□□ 0.21
CUX1-213ENST00000549414 SIN3BO75182 1162 aa16.37■□□□□ 0.21
CUX1-213ENST00000549414 TCEA3O75764 348 aa16.37■□□□□ 0.21
CUX1-213ENST00000549414 KRT6AP02538 564 aa16.37■□□□□ 0.21
CUX1-213ENST00000549414 KRT6BP04259 564 aa16.37■□□□□ 0.21
CUX1-213ENST00000549414 ANPEPP15144 967 aa16.37■□□□□ 0.21
CUX1-213ENST00000549414 IFNA8P32881 189 aa16.37■□□□□ 0.21
CUX1-213ENST00000549414 GRIA3P42263 894 aa16.37■□□□□ 0.21
CUX1-213ENST00000549414 KRT6CP48668 564 aa16.37■□□□□ 0.21
CUX1-213ENST00000549414 CXCR3P49682 368 aa16.37■□□□□ 0.21
CUX1-213ENST00000549414 TAS2R39P59534 338 aa16.37■□□□□ 0.21
CUX1-213ENST00000549414 SOX4Q06945 474 aaPredicted RBP16.37■□□□□ 0.21
CUX1-213ENST00000549414 KRT72Q14CN4 511 aa16.37■□□□□ 0.21
CUX1-213ENST00000549414 SIX1Q15475 284 aaPredicted RBP16.37■□□□□ 0.21
CUX1-213ENST00000549414 CRY1Q16526 586 aa16.37■□□□□ 0.21
CUX1-213ENST00000549414 RRM2BQ7LG56 351 aa16.37■□□□□ 0.21
CUX1-213ENST00000549414 SYTL1Q8IYJ3 562 aa16.37■□□□□ 0.21
CUX1-213ENST00000549414 FAM120BQ96EK7 910 aaKnown RBP16.37■□□□□ 0.21
CUX1-213ENST00000549414 NFKBIZQ9BYH8 718 aa16.37■□□□□ 0.21
CUX1-213ENST00000549414 OSGEPL1Q9H4B0 414 aa16.37■□□□□ 0.21
CUX1-213ENST00000549414 ZFP14Q9HCL3 533 aa16.37■□□□□ 0.21
CUX1-213ENST00000549414 ZNHIT2Q9UHR6 403 aa16.37■□□□□ 0.21
CUX1-213ENST00000549414 CLCA2Q9UQC9 943 aa16.37■□□□□ 0.21
CUX1-213ENST00000549414 KCNU1A8MYU2 1149 aa16.37■□□□□ 0.21
CUX1-213ENST00000549414 LPOP22079 712 aaPredicted RBP16.37■□□□□ 0.21
CUX1-213ENST00000549414 PAX7P23759 505 aa16.37■□□□□ 0.21
CUX1-213ENST00000549414 SERPINA4P29622 427 aa16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms