RNA–Protein interactions for RNA: ENST00000546588.1

VPS29-203, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,059 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-203ENST00000546588 LRRC45Q96CN5 670 aa8.59□□□□□ -1.03
VPS29-203ENST00000546588 CCDC114Q96M63 670 aa8.59□□□□□ -1.03
VPS29-203ENST00000546588 PRICKLE1Q96MT3 831 aaPredicted RBP8.59□□□□□ -1.03
VPS29-203ENST00000546588 SPATA13Q96N96 652 aa8.59□□□□□ -1.03
VPS29-203ENST00000546588 SLC22A12Q96S37 553 aa8.59□□□□□ -1.03
VPS29-203ENST00000546588 IL12RB2Q99665 862 aa8.59□□□□□ -1.03
VPS29-203ENST00000546588 EPB41L4BQ9H329 900 aa8.59□□□□□ -1.03
VPS29-203ENST00000546588 SFXN1Q9H9B4 322 aa8.59□□□□□ -1.03
VPS29-203ENST00000546588 COX16Q9P0S2 106 aa8.59□□□□□ -1.03
VPS29-203ENST00000546588 MSRAQ9UJ68 235 aa8.59□□□□□ -1.03
VPS29-203ENST00000546588 ADAM30Q9UKF2 790 aa8.59□□□□□ -1.03
VPS29-203ENST00000546588 TRHDEQ9UKU6 1024 aa8.59□□□□□ -1.03
VPS29-203ENST00000546588 MFHAS1Q9Y4C4 1052 aa8.59□□□□□ -1.03
VPS29-203ENST00000546588 RANBP2P49792 3224 aaKnown RBP8.58□□□□□ -1.04
VPS29-203ENST00000546588 A0A1B0GVM2 712 aa8.58□□□□□ -1.04
VPS29-203ENST00000546588 E2F8A0AVK6 867 aa8.58□□□□□ -1.04
VPS29-203ENST00000546588 TCAF2A6NFQ2 919 aa8.58□□□□□ -1.04
VPS29-203ENST00000546588 EPOPA6NHQ4 379 aa8.58□□□□□ -1.04
VPS29-203ENST00000546588 ERI2A8K979 691 aaKnown RBP8.58□□□□□ -1.04
VPS29-203ENST00000546588 SGK1O00141 431 aa8.58□□□□□ -1.04
VPS29-203ENST00000546588 TIMM44O43615 452 aa8.58□□□□□ -1.04
VPS29-203ENST00000546588 CLDN11O75508 207 aa8.58□□□□□ -1.04
VPS29-203ENST00000546588 GLP2RO95838 553 aa8.58□□□□□ -1.04
VPS29-203ENST00000546588 RHOP08100 348 aa8.58□□□□□ -1.04
VPS29-203ENST00000546588 TSHRP16473 764 aa8.58□□□□□ -1.04
VPS29-203ENST00000546588 TACR2P21452 398 aa8.58□□□□□ -1.04
VPS29-203ENST00000546588 PTPN3P26045 913 aa8.58□□□□□ -1.04
VPS29-203ENST00000546588 NOS3P29474 1203 aa8.58□□□□□ -1.04
VPS29-203ENST00000546588 MASP1P48740 699 aa8.58□□□□□ -1.04
VPS29-203ENST00000546588 KCNQ1P51787 676 aa8.58□□□□□ -1.04
VPS29-203ENST00000546588 ITGA8P53708 1063 aa8.58□□□□□ -1.04
VPS29-203ENST00000546588 MRPS25P82663 173 aaKnown RBP8.58□□□□□ -1.04
VPS29-203ENST00000546588 SARNPP82979 210 aaKnown RBP8.58□□□□□ -1.04
VPS29-203ENST00000546588 ID3Q02535 119 aa8.58□□□□□ -1.04
VPS29-203ENST00000546588 CASP8Q14790 479 aa8.58□□□□□ -1.04
VPS29-203ENST00000546588 SLMAPQ14BN4 828 aa8.58□□□□□ -1.04
VPS29-203ENST00000546588 UAP1Q16222 522 aaPredicted RBP8.58□□□□□ -1.04
VPS29-203ENST00000546588 LRIT3Q3SXY7 679 aa8.58□□□□□ -1.04
VPS29-203ENST00000546588 FAM153CQ494X1 144 aa8.58□□□□□ -1.04
VPS29-203ENST00000546588 KCTD11Q693B1 232 aa8.58□□□□□ -1.04
VPS29-203ENST00000546588 TIGD7Q6NT04 549 aaPredicted RBP8.58□□□□□ -1.04
VPS29-203ENST00000546588 C1orf228Q6PIY5 440 aa8.58□□□□□ -1.04
VPS29-203ENST00000546588 ADGRD2Q7Z7M1 963 aa8.58□□□□□ -1.04
VPS29-203ENST00000546588 C14orf80Q86SX3 495 aa8.58□□□□□ -1.04
VPS29-203ENST00000546588 ZC3H18Q86VM9 953 aaKnown RBP8.58□□□□□ -1.04
VPS29-203ENST00000546588 MIB1Q86YT6 1006 aa8.58□□□□□ -1.04
VPS29-203ENST00000546588 LMNTD2Q8IXW0 634 aa8.58□□□□□ -1.04
VPS29-203ENST00000546588 PPIL6Q8IXY8 311 aa8.58□□□□□ -1.04
VPS29-203ENST00000546588 UBASH3BQ8TF42 649 aa8.58□□□□□ -1.04
VPS29-203ENST00000546588 RSAD2Q8WXG1 361 aa8.58□□□□□ -1.04
VPS29-203ENST00000546588 TADA1Q96BN2 335 aa8.58□□□□□ -1.04
VPS29-203ENST00000546588 OTUB2Q96DC9 234 aa8.58□□□□□ -1.04
VPS29-203ENST00000546588 P2RY11Q96G91 374 aa8.58□□□□□ -1.04
VPS29-203ENST00000546588 ZNF599Q96NL3 588 aa8.58□□□□□ -1.04
VPS29-203ENST00000546588 PPP1R2P1Q96PQ5 205 aa8.58□□□□□ -1.04
VPS29-203ENST00000546588 SH3GL2Q99962 352 aa8.58□□□□□ -1.04
VPS29-203ENST00000546588 FAM118BQ9BPY3 351 aa8.58□□□□□ -1.04
VPS29-203ENST00000546588 DDX50Q9BQ39 737 aaKnown RBP8.58□□□□□ -1.04
VPS29-203ENST00000546588 DPH2Q9BQC3 489 aaPredicted RBP8.58□□□□□ -1.04
VPS29-203ENST00000546588 GORASP1Q9BQQ3 440 aa8.58□□□□□ -1.04
VPS29-203ENST00000546588 TASP1Q9H6P5 420 aa8.58□□□□□ -1.04
VPS29-203ENST00000546588 KIF9Q9HAQ2 790 aa8.58□□□□□ -1.04
VPS29-203ENST00000546588 PDFQ9HBH1 243 aa8.58□□□□□ -1.04
VPS29-203ENST00000546588 DNMT3BQ9UBC3 853 aaKnown RBP8.58□□□□□ -1.04
VPS29-203ENST00000546588 MTRF1LQ9UGC7 380 aaKnown RBP8.58□□□□□ -1.04
VPS29-203ENST00000546588 ASIC3Q9UHC3 531 aa8.58□□□□□ -1.04
VPS29-203ENST00000546588 FAM153AQ9UHL3 310 aa8.58□□□□□ -1.04
VPS29-203ENST00000546588 AGO1Q9UL18 857 aaKnown RBP8.58□□□□□ -1.04
VPS29-203ENST00000546588 SNX24Q9Y343 169 aa8.58□□□□□ -1.04
VPS29-203ENST00000546588 HEY1Q9Y5J3 304 aa8.58□□□□□ -1.04
VPS29-203ENST00000546588 LAMA3Q16787 3333 aa8.58□□□□□ -1.04
VPS29-203ENST00000546588 MYOFQ9NZM1 2061 aa8.57□□□□□ -1.04
VPS29-203ENST00000546588 TRAV19A0A0A6YYK7 116 aa8.57□□□□□ -1.04
VPS29-203ENST00000546588 KRTAP4-8A0A0G2JLE6 195 aa8.57□□□□□ -1.04
VPS29-203ENST00000546588 ILVBLA1L0T0 632 aa8.57□□□□□ -1.04
VPS29-203ENST00000546588 F5H5T6 163 aa8.57□□□□□ -1.04
VPS29-203ENST00000546588 H0YGN5 161 aa8.57□□□□□ -1.04
VPS29-203ENST00000546588 H7C0C1 242 aa8.57□□□□□ -1.04
VPS29-203ENST00000546588 AGRPO00253 132 aa8.57□□□□□ -1.04
VPS29-203ENST00000546588 ZNF197O14709 1029 aa8.57□□□□□ -1.04
VPS29-203ENST00000546588 MATN3O15232 486 aa8.57□□□□□ -1.04
VPS29-203ENST00000546588 KCNN4O15554 427 aa8.57□□□□□ -1.04
VPS29-203ENST00000546588 RFPL2O75678 378 aa8.57□□□□□ -1.04
VPS29-203ENST00000546588 TMEM63AO94886 807 aa8.57□□□□□ -1.04
VPS29-203ENST00000546588 SUN1O94901 812 aa8.57□□□□□ -1.04
VPS29-203ENST00000546588 TP53P04637 393 aaPredicted RBP8.57□□□□□ -1.04
VPS29-203ENST00000546588 ABHD2P08910 425 aa8.57□□□□□ -1.04
VPS29-203ENST00000546588 MBL2P11226 248 aaPredicted RBP8.57□□□□□ -1.04
VPS29-203ENST00000546588 MLNP12872 115 aa8.57□□□□□ -1.04
VPS29-203ENST00000546588 HDCP19113 662 aa8.57□□□□□ -1.04
VPS29-203ENST00000546588 CORO1AP31146 461 aaKnown RBP8.57□□□□□ -1.04
VPS29-203ENST00000546588 CHKAP35790 457 aa8.57□□□□□ -1.04
VPS29-203ENST00000546588 FDFT1P37268 417 aa8.57□□□□□ -1.04
VPS29-203ENST00000546588 ATP5OP48047 213 aa8.57□□□□□ -1.04
VPS29-203ENST00000546588 IRAK1P51617 712 aa8.57□□□□□ -1.04
VPS29-203ENST00000546588 IL10RBQ08334 325 aa8.57□□□□□ -1.04
VPS29-203ENST00000546588 GPS1Q13098 491 aa8.57□□□□□ -1.04
VPS29-203ENST00000546588 HNRNPDQ14103 355 aaKnown RBP8.57□□□□□ -1.04
VPS29-203ENST00000546588 ZNF77Q15935 545 aa8.57□□□□□ -1.04
VPS29-203ENST00000546588 SLC5A9Q2M3M2 681 aa8.57□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms