RNA–Protein interactions for RNA: ENST00000542407.5

PDLIM5-221, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PDLIM5, Length 2,979 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-221ENST00000542407 PPP2R2BQ00005 443 aa8.07□□□□□ -1.12
PDLIM5-221ENST00000542407 TRAP1Q12931 704 aaKnown RBP8.07□□□□□ -1.12
PDLIM5-221ENST00000542407 GK3PQ14409 553 aa8.07□□□□□ -1.12
PDLIM5-221ENST00000542407 KRT81Q14533 505 aa8.07□□□□□ -1.12
PDLIM5-221ENST00000542407 RFTN1Q14699 578 aaPredicted RBP8.07□□□□□ -1.12
PDLIM5-221ENST00000542407 HADHQ16836 314 aaKnown RBP8.07□□□□□ -1.12
PDLIM5-221ENST00000542407 EFHC1Q5JVL4 640 aa8.07□□□□□ -1.12
PDLIM5-221ENST00000542407 RNF111Q6ZNA4 994 aa8.07□□□□□ -1.12
PDLIM5-221ENST00000542407 ARCQ7LC44 396 aa8.07□□□□□ -1.12
PDLIM5-221ENST00000542407 TTLQ8NG68 377 aa8.07□□□□□ -1.12
PDLIM5-221ENST00000542407 PXYLP1Q8TE99 480 aa8.07□□□□□ -1.12
PDLIM5-221ENST00000542407 CENPIQ92674 756 aaPredicted RBP8.07□□□□□ -1.12
PDLIM5-221ENST00000542407 CNDP1Q96KN2 507 aa8.07□□□□□ -1.12
PDLIM5-221ENST00000542407 FAM111AQ96PZ2 611 aa8.07□□□□□ -1.12
PDLIM5-221ENST00000542407 GID8Q9NWU2 228 aa8.07□□□□□ -1.12
PDLIM5-221ENST00000542407 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP8.07□□□□□ -1.12
PDLIM5-221ENST00000542407 PSMC3IPQ9P2W1 217 aaPredicted RBP8.07□□□□□ -1.12
PDLIM5-221ENST00000542407 DRG1Q9Y295 367 aaKnown RBP8.07□□□□□ -1.12
PDLIM5-221ENST00000542407 A0A088AWK7 358 aa8.07□□□□□ -1.12
PDLIM5-221ENST00000542407 A0A0U1RQF3 1178 aa8.07□□□□□ -1.12
PDLIM5-221ENST00000542407 CCDC195A0A1B0GUA6 201 aa8.07□□□□□ -1.12
PDLIM5-221ENST00000542407 INPPL1O15357 1258 aa8.07□□□□□ -1.12
PDLIM5-221ENST00000542407 BEST1O76090 585 aa8.07□□□□□ -1.12
PDLIM5-221ENST00000542407 THP07101 528 aa8.07□□□□□ -1.12
PDLIM5-221ENST00000542407 POLR2CP19387 275 aaPredicted RBP8.07□□□□□ -1.12
PDLIM5-221ENST00000542407 ENTPD1P49961 510 aa8.07□□□□□ -1.12
PDLIM5-221ENST00000542407 VCPP55072 806 aaKnown RBP8.07□□□□□ -1.12
PDLIM5-221ENST00000542407 UPP1Q16831 310 aa8.07□□□□□ -1.12
PDLIM5-221ENST00000542407 Q3ZCU0 254 aa8.07□□□□□ -1.12
PDLIM5-221ENST00000542407 DNAL1Q4LDG9 190 aa8.07□□□□□ -1.12
PDLIM5-221ENST00000542407 Q6ZNX1 250 aa8.07□□□□□ -1.12
PDLIM5-221ENST00000542407 SLC26A9Q7LBE3 791 aa8.07□□□□□ -1.12
PDLIM5-221ENST00000542407 OR8H2Q8N162 312 aa8.07□□□□□ -1.12
PDLIM5-221ENST00000542407 LZTR1Q8N653 840 aa8.07□□□□□ -1.12
PDLIM5-221ENST00000542407 SENP8Q96LD8 212 aa8.07□□□□□ -1.12
PDLIM5-221ENST00000542407 COQ7Q99807 217 aa8.07□□□□□ -1.12
PDLIM5-221ENST00000542407 ARMC7Q9H6L4 198 aa8.07□□□□□ -1.12
PDLIM5-221ENST00000542407 WDR6Q9NNW5 1121 aaKnown RBP8.07□□□□□ -1.12
PDLIM5-221ENST00000542407 PALMDQ9NP74 551 aa8.07□□□□□ -1.12
PDLIM5-221ENST00000542407 CRTAC1Q9NQ79 661 aa8.07□□□□□ -1.12
PDLIM5-221ENST00000542407 TAGLN3Q9UI15 199 aa8.07□□□□□ -1.12
PDLIM5-221ENST00000542407 INPP5FQ9Y2H2 1132 aa8.07□□□□□ -1.12
PDLIM5-221ENST00000542407 DTNAQ9Y4J8 743 aa8.07□□□□□ -1.12
PDLIM5-221ENST00000542407 PRR5-ARHGAP8B1AHC4 643 aa8.07□□□□□ -1.12
PDLIM5-221ENST00000542407 XPO1O14980 1071 aaKnown RBP8.07□□□□□ -1.12
PDLIM5-221ENST00000542407 LPXNO60711 386 aa8.07□□□□□ -1.12
PDLIM5-221ENST00000542407 CABYRO75952 493 aa8.07□□□□□ -1.12
PDLIM5-221ENST00000542407 IL33O95760 270 aa8.07□□□□□ -1.12
PDLIM5-221ENST00000542407 BPNT1O95861 308 aa8.07□□□□□ -1.12
PDLIM5-221ENST00000542407 ITGAVP06756 1048 aa8.07□□□□□ -1.12
PDLIM5-221ENST00000542407 PABPC1P11940 636 aaKnown RBP8.07□□□□□ -1.12
PDLIM5-221ENST00000542407 POU2F1P14859 743 aa8.07□□□□□ -1.12
PDLIM5-221ENST00000542407 M6PRP20645 277 aa8.07□□□□□ -1.12
PDLIM5-221ENST00000542407 ACAT1P24752 427 aaKnown RBP8.07□□□□□ -1.12
PDLIM5-221ENST00000542407 PTPN9P43378 593 aa8.07□□□□□ -1.12
PDLIM5-221ENST00000542407 ZNF135P52742 658 aaPredicted RBP8.07□□□□□ -1.12
PDLIM5-221ENST00000542407 ARHGAP8P85298 464 aa8.07□□□□□ -1.12
PDLIM5-221ENST00000542407 SMAD4Q13485 552 aaKnown RBP8.07□□□□□ -1.12
PDLIM5-221ENST00000542407 UBAP2LQ14157 1087 aaKnown RBP8.07□□□□□ -1.12
PDLIM5-221ENST00000542407 MBTPS1Q14703 1052 aa8.07□□□□□ -1.12
PDLIM5-221ENST00000542407 RALGPS1Q5JS13 557 aa8.07□□□□□ -1.12
PDLIM5-221ENST00000542407 TCHHL1Q5QJ38 904 aaPredicted RBP8.07□□□□□ -1.12
PDLIM5-221ENST00000542407 OTUD1Q5VV17 481 aaPredicted RBP8.07□□□□□ -1.12
PDLIM5-221ENST00000542407 ARID3BQ8IVW6 561 aaPredicted RBP8.07□□□□□ -1.12
PDLIM5-221ENST00000542407 EFHD2Q96C19 240 aaPredicted RBP8.07□□□□□ -1.12
PDLIM5-221ENST00000542407 TNIP3Q96KP6 325 aa8.07□□□□□ -1.12
PDLIM5-221ENST00000542407 PIP5K1AQ99755 562 aa8.07□□□□□ -1.12
PDLIM5-221ENST00000542407 RTP3Q9BQQ7 232 aa8.07□□□□□ -1.12
PDLIM5-221ENST00000542407 TSEN34Q9BSV6 310 aaKnown RBP8.07□□□□□ -1.12
PDLIM5-221ENST00000542407 GHITMQ9H3K2 345 aa8.07□□□□□ -1.12
PDLIM5-221ENST00000542407 EPB41L1Q9H4G0 881 aa8.07□□□□□ -1.12
PDLIM5-221ENST00000542407 IFT22Q9H7X7 185 aa8.07□□□□□ -1.12
PDLIM5-221ENST00000542407 GPAMQ9HCL2 828 aa8.07□□□□□ -1.12
PDLIM5-221ENST00000542407 SAE1Q9UBE0 346 aaPredicted RBP8.07□□□□□ -1.12
PDLIM5-221ENST00000542407 AK5Q9Y6K8 562 aa8.07□□□□□ -1.12
PDLIM5-221ENST00000542407 SYCE1LA8MT33 242 aa8.06□□□□□ -1.12
PDLIM5-221ENST00000542407 E9PBE3 544 aa8.06□□□□□ -1.12
PDLIM5-221ENST00000542407 CLDN5O00501 218 aa8.06□□□□□ -1.12
PDLIM5-221ENST00000542407 GREM1O60565 184 aa8.06□□□□□ -1.12
PDLIM5-221ENST00000542407 PRLP01236 227 aa8.06□□□□□ -1.12
PDLIM5-221ENST00000542407 CYP17A1P05093 508 aa8.06□□□□□ -1.12
PDLIM5-221ENST00000542407 SRGAP2BP0DMP2 458 aa8.06□□□□□ -1.12
PDLIM5-221ENST00000542407 ETS1P14921 441 aa8.06□□□□□ -1.12
PDLIM5-221ENST00000542407 PTPN1P18031 435 aaKnown RBP8.06□□□□□ -1.12
PDLIM5-221ENST00000542407 IL10P22301 178 aa8.06□□□□□ -1.12
PDLIM5-221ENST00000542407 TCEA1P23193 301 aaKnown RBP8.06□□□□□ -1.12
PDLIM5-221ENST00000542407 MAPK1P28482 360 aa8.06□□□□□ -1.12
PDLIM5-221ENST00000542407 TRIM23P36406 574 aa8.06□□□□□ -1.12
PDLIM5-221ENST00000542407 ACY1Q03154 408 aa8.06□□□□□ -1.12
PDLIM5-221ENST00000542407 CBLBQ13191 982 aa8.06□□□□□ -1.12
PDLIM5-221ENST00000542407 DPYSL3Q14195 570 aa8.06□□□□□ -1.12
PDLIM5-221ENST00000542407 RNASEH2BQ5TBB1 312 aaKnown RBP8.06□□□□□ -1.12
PDLIM5-221ENST00000542407 FAM122CQ6P4D5 195 aa8.06□□□□□ -1.12
PDLIM5-221ENST00000542407 BNIPLQ7Z465 357 aa8.06□□□□□ -1.12
PDLIM5-221ENST00000542407 AMIGO2Q86SJ2 522 aa8.06□□□□□ -1.12
PDLIM5-221ENST00000542407 RNF180Q86T96 592 aa8.06□□□□□ -1.12
PDLIM5-221ENST00000542407 BBS5Q8N3I7 341 aa8.06□□□□□ -1.12
PDLIM5-221ENST00000542407 RNF169Q8NCN4 708 aa8.06□□□□□ -1.12
PDLIM5-221ENST00000542407 PJA1Q8NG27 643 aa8.06□□□□□ -1.12
PDLIM5-221ENST00000542407 CALML6Q8TD86 181 aa8.06□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms