RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 B3GALT6Q96L58 329 aa14.19□□□□□ -0.14
USP3-204ENST00000540797 NSMCE2Q96MF7 247 aa14.19□□□□□ -0.14
USP3-204ENST00000540797 TNKS2Q9H2K2 1166 aa14.19□□□□□ -0.14
USP3-204ENST00000540797 RAD21L1Q9H4I0 556 aa14.19□□□□□ -0.14
USP3-204ENST00000540797 SLC12A4Q9UP95 1085 aa14.19□□□□□ -0.14
USP3-204ENST00000540797 A0A0U1RQF3 1178 aa14.19□□□□□ -0.14
USP3-204ENST00000540797 A0A1W2PQ67 120 aa14.19□□□□□ -0.14
USP3-204ENST00000540797 PER2O15055 1255 aa14.19□□□□□ -0.14
USP3-204ENST00000540797 DHX15O43143 795 aaKnown RBP14.19□□□□□ -0.14
USP3-204ENST00000540797 ITGA2BP08514 1039 aa14.19□□□□□ -0.14
USP3-204ENST00000540797 ABHD2P08910 425 aa14.19□□□□□ -0.14
USP3-204ENST00000540797 L1CAMP32004 1257 aa14.19□□□□□ -0.14
USP3-204ENST00000540797 GBE1Q04446 702 aa14.19□□□□□ -0.14
USP3-204ENST00000540797 GNA13Q14344 377 aa14.19□□□□□ -0.14
USP3-204ENST00000540797 CERCAMQ5T4B2 595 aa14.19□□□□□ -0.14
USP3-204ENST00000540797 CCDC185Q8N715 623 aa14.19□□□□□ -0.14
USP3-204ENST00000540797 ATG16L2Q8NAA4 619 aa14.19□□□□□ -0.14
USP3-204ENST00000540797 FEM1CQ96JP0 617 aa14.19□□□□□ -0.14
USP3-204ENST00000540797 MAGEH1Q9H213 219 aa14.19□□□□□ -0.14
USP3-204ENST00000540797 CREBZFQ9NS37 354 aa14.19□□□□□ -0.14
USP3-204ENST00000540797 PRKAG3Q9UGI9 489 aa14.19□□□□□ -0.14
USP3-204ENST00000540797 EFR3BQ9Y2G0 817 aa14.19□□□□□ -0.14
USP3-204ENST00000540797 RASSF10A6NK89 507 aa14.19□□□□□ -0.14
USP3-204ENST00000540797 LRIG2O94898 1065 aa14.19□□□□□ -0.14
USP3-204ENST00000540797 LBPP18428 481 aa14.19□□□□□ -0.14
USP3-204ENST00000540797 ATP6V0D1P61421 351 aa14.19□□□□□ -0.14
USP3-204ENST00000540797 RUNX1T1Q06455 604 aa14.19□□□□□ -0.14
USP3-204ENST00000540797 XKR6Q5GH73 641 aa14.19□□□□□ -0.14
USP3-204ENST00000540797 TMEM63BQ5T3F8 832 aa14.19□□□□□ -0.14
USP3-204ENST00000540797 CCDC81Q6ZN84 652 aa14.19□□□□□ -0.14
USP3-204ENST00000540797 TMEM192Q8IY95 271 aa14.19□□□□□ -0.14
USP3-204ENST00000540797 OR7D4Q8NG98 312 aa14.19□□□□□ -0.14
USP3-204ENST00000540797 LINGO1Q96FE5 620 aa14.19□□□□□ -0.14
USP3-204ENST00000540797 RXFP1Q9HBX9 757 aa14.19□□□□□ -0.14
USP3-204ENST00000540797 LRRC37A3O60309 1634 aa14.19□□□□□ -0.14
USP3-204ENST00000540797 GLYATL1P3A0A0U1RQE8 302 aa14.18□□□□□ -0.14
USP3-204ENST00000540797 URADA6NGE7 173 aa14.18□□□□□ -0.14
USP3-204ENST00000540797 RNF225M0QZC1 329 aaPredicted RBP14.18□□□□□ -0.14
USP3-204ENST00000540797 UBXN8O00124 270 aa14.18□□□□□ -0.14
USP3-204ENST00000540797 FFAR3O14843 346 aa14.18□□□□□ -0.14
USP3-204ENST00000540797 GPR42O15529 346 aa14.18□□□□□ -0.14
USP3-204ENST00000540797 PTPN4P29074 926 aa14.18□□□□□ -0.14
USP3-204ENST00000540797 ASPAP45381 313 aa14.18□□□□□ -0.14
USP3-204ENST00000540797 MAPKAPK2P49137 400 aa14.18□□□□□ -0.14
USP3-204ENST00000540797 DRG2P55039 364 aaKnown RBP14.18□□□□□ -0.14
USP3-204ENST00000540797 SEC13P55735 322 aa14.18□□□□□ -0.14
USP3-204ENST00000540797 DEPDC1Q5TB30 811 aa14.18□□□□□ -0.14
USP3-204ENST00000540797 RHBDF2Q6PJF5 856 aa14.18□□□□□ -0.14
USP3-204ENST00000540797 BEND7Q8N7W2 519 aaPredicted RBP14.18□□□□□ -0.14
USP3-204ENST00000540797 TSEN2Q8NCE0 465 aaKnown RBP14.18□□□□□ -0.14
USP3-204ENST00000540797 OR52K2Q8NGK3 314 aa14.18□□□□□ -0.14
USP3-204ENST00000540797 PWWP2AQ96N64 755 aa14.18□□□□□ -0.14
USP3-204ENST00000540797 MRPL57Q9BQC6 102 aaKnown RBP14.18□□□□□ -0.14
USP3-204ENST00000540797 FAIM2Q9BWQ8 316 aa14.18□□□□□ -0.14
USP3-204ENST00000540797 YIPF3Q9GZM5 350 aa14.18□□□□□ -0.14
USP3-204ENST00000540797 UNC93B1Q9H1C4 597 aa14.18□□□□□ -0.14
USP3-204ENST00000540797 MAP10Q9P2G4 905 aa14.18□□□□□ -0.14
USP3-204ENST00000540797 GABRQQ9UN88 632 aa14.18□□□□□ -0.14
USP3-204ENST00000540797 ASB3Q9Y575 518 aa14.18□□□□□ -0.14
USP3-204ENST00000540797 C5orf60A6NFR6 353 aa14.18□□□□□ -0.14
USP3-204ENST00000540797 CCNCP24863 283 aa14.18□□□□□ -0.14
USP3-204ENST00000540797 VHLP40337 213 aa14.18□□□□□ -0.14
USP3-204ENST00000540797 HNF4AP41235 474 aa14.18□□□□□ -0.14
USP3-204ENST00000540797 DGKGP49619 791 aa14.18□□□□□ -0.14
USP3-204ENST00000540797 NAA20P61599 178 aa14.18□□□□□ -0.14
USP3-204ENST00000540797 ARHGAP17Q68EM7 881 aa14.18□□□□□ -0.14
USP3-204ENST00000540797 DUPD1Q68J44 220 aa14.18□□□□□ -0.14
USP3-204ENST00000540797 PLD5Q8N7P1 536 aa14.18□□□□□ -0.14
USP3-204ENST00000540797 PRRG3Q9BZD7 231 aa14.18□□□□□ -0.14
USP3-204ENST00000540797 ABCG4Q9H172 646 aa14.18□□□□□ -0.14
USP3-204ENST00000540797 IMP3Q9NV31 184 aaKnown RBP14.18□□□□□ -0.14
USP3-204ENST00000540797 ATAD3AQ9NVI7 634 aa14.18□□□□□ -0.14
USP3-204ENST00000540797 NDST3O95803 873 aa14.18□□□□□ -0.14
USP3-204ENST00000540797 GSNP06396 782 aa14.18□□□□□ -0.14
USP3-204ENST00000540797 FCGR1AP12314 374 aa14.18□□□□□ -0.14
USP3-204ENST00000540797 JAM2P57087 298 aa14.18□□□□□ -0.14
USP3-204ENST00000540797 FRG1Q14331 258 aaKnown RBP14.18□□□□□ -0.14
USP3-204ENST00000540797 SOWAHAQ2M3V2 549 aa14.18□□□□□ -0.14
USP3-204ENST00000540797 FAM98BQ52LJ0 330 aaKnown RBP14.18□□□□□ -0.14
USP3-204ENST00000540797 CIR1Q86X95 450 aaPredicted RBP14.18□□□□□ -0.14
USP3-204ENST00000540797 PHYKPLQ8IUZ5 450 aa14.18□□□□□ -0.14
USP3-204ENST00000540797 OR4K2Q8NGD2 314 aa14.18□□□□□ -0.14
USP3-204ENST00000540797 C7orf43Q8WVR3 580 aa14.18□□□□□ -0.14
USP3-204ENST00000540797 RNF186Q9NXI6 227 aa14.18□□□□□ -0.14
USP3-204ENST00000540797 COL1A1P02452 1464 aaPredicted RBP14.18□□□□□ -0.14
USP3-204ENST00000540797 ULK1O75385 1050 aa14.18□□□□□ -0.14
USP3-204ENST00000540797 CLK1P49759 484 aaKnown RBP14.18□□□□□ -0.14
USP3-204ENST00000540797 TRIM60Q495X7 471 aa14.18□□□□□ -0.14
USP3-204ENST00000540797 ALFQ53S48 1182 aa14.18□□□□□ -0.14
USP3-204ENST00000540797 SIAH1Q8IUQ4 282 aa14.18□□□□□ -0.14
USP3-204ENST00000540797 SEPHS2Q99611 448 aa14.18□□□□□ -0.14
USP3-204ENST00000540797 CCT7Q99832 543 aa14.18□□□□□ -0.14
USP3-204ENST00000540797 SLC25A23Q9BV35 468 aa14.18□□□□□ -0.14
USP3-204ENST00000540797 BCAS3Q9H6U6 928 aa14.18□□□□□ -0.14
USP3-204ENST00000540797 GTF2A1LQ9UNN4 478 aa14.18□□□□□ -0.14
USP3-204ENST00000540797 ERVW-1Q9UQF0 538 aa14.18□□□□□ -0.14
USP3-204ENST00000540797 VWA7Q9Y334 891 aa14.18□□□□□ -0.14
USP3-204ENST00000540797 KCNE2Q9Y6J6 123 aa14.18□□□□□ -0.14
USP3-204ENST00000540797 FAM220BPB1ANY3 271 aa14.18□□□□□ -0.14
USP3-204ENST00000540797 ADAMTS3O15072 1205 aa14.18□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms