RNA–Protein interactions for RNA: ENST00000540475.5

SEMA4D-223, Transcript of semaphorin 4D, human

TSL 3

Gene SEMA4D, Length 826 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SEMA4D-223	ENST00000540475	BZW2	Q9Y6E2	419 aa	Known RBP	13.25	□□□□□ -0.29
SEMA4D-223	ENST00000540475	SCIN	Q9Y6U3	715 aa		13.25	□□□□□ -0.29
SEMA4D-223	ENST00000540475	RP1	P56715	2156 aa		13.25	□□□□□ -0.29
SEMA4D-223	ENST00000540475	SHROOM3	Q8TF72	1996 aa		13.24	□□□□□ -0.29
SEMA4D-223	ENST00000540475	ARHGAP42	A6NI28	874 aa		13.24	□□□□□ -0.29
SEMA4D-223	ENST00000540475		H3BM21	787 aa		13.24	□□□□□ -0.29
SEMA4D-223	ENST00000540475	NEMP1	O14524	444 aa		13.24	□□□□□ -0.29
SEMA4D-223	ENST00000540475	MMP20	O60882	483 aa		13.24	□□□□□ -0.29
SEMA4D-223	ENST00000540475	PEX5	P50542	639 aa		13.24	□□□□□ -0.29
SEMA4D-223	ENST00000540475	IL10RB	Q08334	325 aa		13.24	□□□□□ -0.29
SEMA4D-223	ENST00000540475	ELP6	Q0PNE2	266 aa		13.24	□□□□□ -0.29
SEMA4D-223	ENST00000540475	PDE1C	Q14123	709 aa	Predicted RBP	13.24	□□□□□ -0.29
SEMA4D-223	ENST00000540475	PTK2B	Q14289	1009 aa		13.24	□□□□□ -0.29
SEMA4D-223	ENST00000540475	DPYSL2	Q16555	572 aa		13.24	□□□□□ -0.29
SEMA4D-223	ENST00000540475	KLHL40	Q2TBA0	621 aa		13.24	□□□□□ -0.29
SEMA4D-223	ENST00000540475	HS1BP3	Q53T59	392 aa		13.24	□□□□□ -0.29
SEMA4D-223	ENST00000540475	ZNF542P	Q5EBM4	170 aa		13.24	□□□□□ -0.29
SEMA4D-223	ENST00000540475	ZCCHC8	Q6NZY4	707 aa	Known RBP	13.24	□□□□□ -0.29
SEMA4D-223	ENST00000540475	BRAT1	Q6PJG6	821 aa		13.24	□□□□□ -0.29
SEMA4D-223	ENST00000540475	ZNF354C	Q86Y25	554 aa		13.24	□□□□□ -0.29
SEMA4D-223	ENST00000540475	LZTR1	Q8N653	840 aa		13.24	□□□□□ -0.29
SEMA4D-223	ENST00000540475	NETO2	Q8NC67	525 aa		13.24	□□□□□ -0.29
SEMA4D-223	ENST00000540475	NXPE2	Q96DL1	559 aa		13.24	□□□□□ -0.29
SEMA4D-223	ENST00000540475	C1QTNF7	Q9BXJ2	289 aa		13.24	□□□□□ -0.29
SEMA4D-223	ENST00000540475	MBNL1	Q9NR56	388 aa	Known RBP	13.24	□□□□□ -0.29
SEMA4D-223	ENST00000540475	NCKIPSD	Q9NZQ3	722 aa		13.24	□□□□□ -0.29
SEMA4D-223	ENST00000540475	CWC15	Q9P013	229 aa	Known RBP	13.24	□□□□□ -0.29
SEMA4D-223	ENST00000540475	PCSK1N	Q9UHG2	260 aa		13.24	□□□□□ -0.29
SEMA4D-223	ENST00000540475	PNMA8B	Q9ULN7	279 aa	Predicted RBP	13.24	□□□□□ -0.29
SEMA4D-223	ENST00000540475	PRPSAP2	O60256	369 aa		13.23	□□□□□ -0.29
SEMA4D-223	ENST00000540475	PIGN	O95427	931 aa		13.23	□□□□□ -0.29
SEMA4D-223	ENST00000540475	SKIL	P12757	684 aa		13.23	□□□□□ -0.29
SEMA4D-223	ENST00000540475	JUND	P17535	347 aa		13.23	□□□□□ -0.29
SEMA4D-223	ENST00000540475	IL1R2	P27930	398 aa		13.23	□□□□□ -0.29
SEMA4D-223	ENST00000540475	RGR	P47804	291 aa		13.23	□□□□□ -0.29
SEMA4D-223	ENST00000540475	DUSP3	P51452	185 aa	Predicted RBP	13.23	□□□□□ -0.29
SEMA4D-223	ENST00000540475	CLDN6	P56747	220 aa		13.23	□□□□□ -0.29
SEMA4D-223	ENST00000540475	BOLA3	Q53S33	107 aa		13.23	□□□□□ -0.29
SEMA4D-223	ENST00000540475	MACC1	Q6ZN28	852 aa		13.23	□□□□□ -0.29
SEMA4D-223	ENST00000540475	SRL	Q86TD4	932 aa		13.23	□□□□□ -0.29
SEMA4D-223	ENST00000540475	ZSWIM9	Q86XI8	627 aa		13.23	□□□□□ -0.29
SEMA4D-223	ENST00000540475	NPW	Q8N729	165 aa		13.23	□□□□□ -0.29
SEMA4D-223	ENST00000540475	NIPA2	Q8N8Q9	360 aa		13.23	□□□□□ -0.29
SEMA4D-223	ENST00000540475	TSEN2	Q8NCE0	465 aa	Known RBP	13.23	□□□□□ -0.29
SEMA4D-223	ENST00000540475	CXorf40A	Q8TE69	158 aa		13.23	□□□□□ -0.29
SEMA4D-223	ENST00000540475	IQCD	Q96DY2	449 aa		13.23	□□□□□ -0.29
SEMA4D-223	ENST00000540475	CELF6	Q96J87	481 aa	Known RBP	13.23	□□□□□ -0.29
SEMA4D-223	ENST00000540475	EXOC2	Q96KP1	924 aa		13.23	□□□□□ -0.29
SEMA4D-223	ENST00000540475	ZNF599	Q96NL3	588 aa		13.23	□□□□□ -0.29
SEMA4D-223	ENST00000540475	PSKH2	Q96QS6	385 aa		13.23	□□□□□ -0.29
SEMA4D-223	ENST00000540475	BOC	Q9BWV1	1114 aa		13.23	□□□□□ -0.29
SEMA4D-223	ENST00000540475	CBX8	Q9HC52	389 aa		13.23	□□□□□ -0.29
SEMA4D-223	ENST00000540475	CACNA1G	O43497	2377 aa		13.23	□□□□□ -0.29
SEMA4D-223	ENST00000540475	EME2	A4GXA9	379 aa	Predicted RBP	13.22	□□□□□ -0.29
SEMA4D-223	ENST00000540475	TMEM110-MUSTN1	A8MSY1	372 aa		13.22	□□□□□ -0.29
SEMA4D-223	ENST00000540475	LMO7DN	F2Z398	122 aa		13.22	□□□□□ -0.29
SEMA4D-223	ENST00000540475	TRAFD1	O14545	582 aa	Predicted RBP	13.22	□□□□□ -0.29
SEMA4D-223	ENST00000540475	FFAR2	O15552	330 aa		13.22	□□□□□ -0.29
SEMA4D-223	ENST00000540475	AQP9	O43315	295 aa		13.22	□□□□□ -0.29
SEMA4D-223	ENST00000540475	OPA1	O60313	960 aa		13.22	□□□□□ -0.29
SEMA4D-223	ENST00000540475	PALM	O75781	387 aa		13.22	□□□□□ -0.29
SEMA4D-223	ENST00000540475	NEBL	O76041	1014 aa		13.22	□□□□□ -0.29
SEMA4D-223	ENST00000540475	PEX11B	O96011	259 aa		13.22	□□□□□ -0.29
SEMA4D-223	ENST00000540475	MT-CO3	P00414	261 aa		13.22	□□□□□ -0.29
SEMA4D-223	ENST00000540475	SERPINC1	P01008	464 aa		13.22	□□□□□ -0.29
SEMA4D-223	ENST00000540475	MMP12	P39900	470 aa		13.22	□□□□□ -0.29
SEMA4D-223	ENST00000540475	DAB2	P98082	770 aa		13.22	□□□□□ -0.29
SEMA4D-223	ENST00000540475	FANCC	Q00597	558 aa		13.22	□□□□□ -0.29
SEMA4D-223	ENST00000540475	PIGH	Q14442	188 aa	Predicted RBP	13.22	□□□□□ -0.29
SEMA4D-223	ENST00000540475	WSCD2	Q2TBF2	565 aa		13.22	□□□□□ -0.29
SEMA4D-223	ENST00000540475	LRRC73	Q5JTD7	316 aa		13.22	□□□□□ -0.29
SEMA4D-223	ENST00000540475	TMCO4	Q5TGY1	634 aa		13.22	□□□□□ -0.29
SEMA4D-223	ENST00000540475	KDM7A	Q6ZMT4	941 aa		13.22	□□□□□ -0.29
SEMA4D-223	ENST00000540475	POLN	Q7Z5Q5	900 aa		13.22	□□□□□ -0.29
SEMA4D-223	ENST00000540475	CAMK1D	Q8IU85	385 aa		13.22	□□□□□ -0.29
SEMA4D-223	ENST00000540475	FAM71B	Q8TC56	605 aa		13.22	□□□□□ -0.29
SEMA4D-223	ENST00000540475	TEKT4	Q8WW24	435 aa		13.22	□□□□□ -0.29
SEMA4D-223	ENST00000540475	ZNF653	Q96CK0	615 aa		13.22	□□□□□ -0.29
SEMA4D-223	ENST00000540475	NSMCE3	Q96MG7	304 aa		13.22	□□□□□ -0.29
SEMA4D-223	ENST00000540475	PCDH12	Q9NPG4	1184 aa		13.22	□□□□□ -0.29
SEMA4D-223	ENST00000540475	EVA1B	Q9NVM1	165 aa		13.22	□□□□□ -0.29
SEMA4D-223	ENST00000540475	SPAST	Q9UBP0	616 aa		13.22	□□□□□ -0.29
SEMA4D-223	ENST00000540475	IPO11	Q9UI26	975 aa	Known RBP	13.22	□□□□□ -0.29
SEMA4D-223	ENST00000540475	CAPN11	Q9UMQ6	739 aa		13.22	□□□□□ -0.29
SEMA4D-223	ENST00000540475	MUSK	O15146	869 aa		13.21	□□□□□ -0.29
SEMA4D-223	ENST00000540475	DAPK3	O43293	454 aa		13.21	□□□□□ -0.29
SEMA4D-223	ENST00000540475	GCAT	O75600	419 aa		13.21	□□□□□ -0.29
SEMA4D-223	ENST00000540475	SERPING1	P05155	500 aa		13.21	□□□□□ -0.29
SEMA4D-223	ENST00000540475	HOXC4	P09017	264 aa	Predicted RBP	13.21	□□□□□ -0.29
SEMA4D-223	ENST00000540475	C6	P13671	934 aa		13.21	□□□□□ -0.29
SEMA4D-223	ENST00000540475	CR2	P20023	1033 aa		13.21	□□□□□ -0.29
SEMA4D-223	ENST00000540475	EIF4A3	P38919	411 aa	Known RBP	13.21	□□□□□ -0.29
SEMA4D-223	ENST00000540475	EIF2S3	P41091	472 aa	Known RBP	13.21	□□□□□ -0.29
SEMA4D-223	ENST00000540475	THOP1	P52888	689 aa		13.21	□□□□□ -0.29
SEMA4D-223	ENST00000540475	ZBED6	P86452	979 aa		13.21	□□□□□ -0.29
SEMA4D-223	ENST00000540475	RALGDS	Q12967	914 aa		13.21	□□□□□ -0.29
SEMA4D-223	ENST00000540475	LRRC14	Q15048	493 aa		13.21	□□□□□ -0.29
SEMA4D-223	ENST00000540475	IRF4	Q15306	451 aa		13.21	□□□□□ -0.29
SEMA4D-223	ENST00000540475	COL28A1	Q2UY09	1125 aa		13.21	□□□□□ -0.29
SEMA4D-223	ENST00000540475	PPP6R3	Q5H9R7	873 aa	Predicted RBP	13.21	□□□□□ -0.29

Retrieved 100 of 20,778 RNA–protein pairs in 85.6 ms