RNA–Protein interactions for RNA: ENST00000539522.2

CCDC42-202, Transcript of coiled-coil domain containing 42, humanhuman

TSL 1 (best) BASIC

Gene CCDC42, Length 1,087 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42-202ENST00000539522 TUBGCP5Q96RT8 1024 aa13.11□□□□□ -0.31
CCDC42-202ENST00000539522 PHOX2BQ99453 314 aa13.11□□□□□ -0.31
CCDC42-202ENST00000539522 KRT12Q99456 494 aa13.11□□□□□ -0.31
CCDC42-202ENST00000539522 TDRD1Q9BXT4 1180 aaKnown RBP13.11□□□□□ -0.31
CCDC42-202ENST00000539522 HDAC8Q9BY41 377 aa13.11□□□□□ -0.31
CCDC42-202ENST00000539522 FAM126AQ9BYI3 521 aaPredicted RBP13.11□□□□□ -0.31
CCDC42-202ENST00000539522 FRMD8P1Q9BZ68 369 aaPredicted RBP13.11□□□□□ -0.31
CCDC42-202ENST00000539522 DUSP15Q9H1R2 295 aaPredicted RBP13.11□□□□□ -0.31
CCDC42-202ENST00000539522 SLC25A51Q9H1U9 297 aa13.11□□□□□ -0.31
CCDC42-202ENST00000539522 SCUBE2Q9NQ36 999 aa13.11□□□□□ -0.31
CCDC42-202ENST00000539522 FAM86C1Q9NVL1 165 aa13.11□□□□□ -0.31
CCDC42-202ENST00000539522 UBP1Q9NZI7 540 aa13.11□□□□□ -0.31
CCDC42-202ENST00000539522 DKK3Q9UBP4 350 aa13.11□□□□□ -0.31
CCDC42-202ENST00000539522 DRG1Q9Y295 367 aaKnown RBP13.11□□□□□ -0.31
CCDC42-202ENST00000539522 CACNA1HO95180 2353 aa13.11□□□□□ -0.31
CCDC42-202ENST00000539522 DYNC1I1O14576 645 aa13.1□□□□□ -0.31
CCDC42-202ENST00000539522 PLRG1O43660 514 aaKnown RBP13.1□□□□□ -0.31
CCDC42-202ENST00000539522 PHF2O75151 1096 aa13.1□□□□□ -0.31
CCDC42-202ENST00000539522 RNASEH2AO75792 299 aaKnown RBP13.1□□□□□ -0.31
CCDC42-202ENST00000539522 ADRB3P13945 408 aa13.1□□□□□ -0.31
CCDC42-202ENST00000539522 GM2AP17900 193 aa13.1□□□□□ -0.31
CCDC42-202ENST00000539522 MCM3P25205 808 aa13.1□□□□□ -0.31
CCDC42-202ENST00000539522 PSMB4P28070 264 aa13.1□□□□□ -0.31
CCDC42-202ENST00000539522 RECQLP46063 649 aaPredicted RBP13.1□□□□□ -0.31
CCDC42-202ENST00000539522 PPP2CBP62714 309 aa13.1□□□□□ -0.31
CCDC42-202ENST00000539522 PPP2CAP67775 309 aa13.1□□□□□ -0.31
CCDC42-202ENST00000539522 RALGDSQ12967 914 aa13.1□□□□□ -0.31
CCDC42-202ENST00000539522 ERN2Q76MJ5 926 aaKnown RBP13.1□□□□□ -0.31
CCDC42-202ENST00000539522 KBTBD6Q86V97 674 aa13.1□□□□□ -0.31
CCDC42-202ENST00000539522 KLHL7Q8IXQ5 586 aa13.1□□□□□ -0.31
CCDC42-202ENST00000539522 DEFB119Q8N690 84 aa13.1□□□□□ -0.31
CCDC42-202ENST00000539522 NSMCE1Q8WV22 266 aa13.1□□□□□ -0.31
CCDC42-202ENST00000539522 MRGPRX2Q96LB1 330 aa13.1□□□□□ -0.31
CCDC42-202ENST00000539522 CCDC114Q96M63 670 aa13.1□□□□□ -0.31
CCDC42-202ENST00000539522 ZNF641Q96N77 438 aaPredicted RBP13.1□□□□□ -0.31
CCDC42-202ENST00000539522 FCRL5Q96RD9 977 aa13.1□□□□□ -0.31
CCDC42-202ENST00000539522 LRRC1Q9BTT6 524 aa13.1□□□□□ -0.31
CCDC42-202ENST00000539522 OSBPL1AQ9BXW6 950 aa13.1□□□□□ -0.31
CCDC42-202ENST00000539522 GBA3Q9H227 469 aa13.1□□□□□ -0.31
CCDC42-202ENST00000539522 C6orf106Q9H6K1 298 aaPredicted RBP13.1□□□□□ -0.31
CCDC42-202ENST00000539522 NOL12Q9UGY1 213 aaKnown RBP eCLIP13.1□□□□□ -0.31
CCDC42-202ENST00000539522 FZD4Q9ULV1 537 aa13.1□□□□□ -0.31
CCDC42-202ENST00000539522 SCML1Q9UN30 329 aa13.1□□□□□ -0.31
CCDC42-202ENST00000539522 ZFR2Q9UPR6 939 aaKnown RBP13.1□□□□□ -0.31
CCDC42-202ENST00000539522 TTLL3Q9Y4R7 772 aa13.1□□□□□ -0.31
CCDC42-202ENST00000539522 PCDHGA2Q9Y5H1 932 aa13.1□□□□□ -0.31
CCDC42-202ENST00000539522 RAI2Q9Y5P3 530 aa13.1□□□□□ -0.31
CCDC42-202ENST00000539522 FADS3Q9Y5Q0 445 aa13.1□□□□□ -0.31
CCDC42-202ENST00000539522 V9GYY5 206 aaPredicted RBP13.1□□□□□ -0.31
CCDC42-202ENST00000539522 SPAG17Q6Q759 2223 aa13.09□□□□□ -0.31
CCDC42-202ENST00000539522 C1QTNF3-AMACRE9PGA6 284 aa13.09□□□□□ -0.31
CCDC42-202ENST00000539522 MTSS1O43312 755 aa13.09□□□□□ -0.31
CCDC42-202ENST00000539522 RNASEH1O60930 286 aaKnown RBP13.09□□□□□ -0.31
CCDC42-202ENST00000539522 SOCS5O75159 536 aa13.09□□□□□ -0.31
CCDC42-202ENST00000539522 RPP40O75818 363 aaKnown RBP13.09□□□□□ -0.31
CCDC42-202ENST00000539522 PGLSO95336 258 aa13.09□□□□□ -0.31
CCDC42-202ENST00000539522 IGHV4-34P06331 123 aa13.09□□□□□ -0.31
CCDC42-202ENST00000539522 RHOXF2BP0C7M4 288 aa13.09□□□□□ -0.31
CCDC42-202ENST00000539522 ATXN1LP0C7T5 689 aaKnown RBP13.09□□□□□ -0.31
CCDC42-202ENST00000539522 CD6P30203 668 aa13.09□□□□□ -0.31
CCDC42-202ENST00000539522 RPL22P35268 128 aaKnown RBP13.09□□□□□ -0.31
CCDC42-202ENST00000539522 ADRA1AP35348 466 aa13.09□□□□□ -0.31
CCDC42-202ENST00000539522 COILP38432 576 aaPredicted RBP13.09□□□□□ -0.31
CCDC42-202ENST00000539522 PTGIRP43119 386 aa13.09□□□□□ -0.31
CCDC42-202ENST00000539522 BCL2L1Q07817 233 aa13.09□□□□□ -0.31
CCDC42-202ENST00000539522 ITKQ08881 620 aa13.09□□□□□ -0.31
CCDC42-202ENST00000539522 MSLNQ13421 630 aaPredicted RBP13.09□□□□□ -0.31
CCDC42-202ENST00000539522 FGL2Q14314 439 aa13.09□□□□□ -0.31
CCDC42-202ENST00000539522 NAA30Q147X3 362 aaPredicted RBP13.09□□□□□ -0.31
CCDC42-202ENST00000539522 CDKN3Q16667 212 aa13.09□□□□□ -0.31
CCDC42-202ENST00000539522 UGP2Q16851 508 aa13.09□□□□□ -0.31
CCDC42-202ENST00000539522 PLK5Q496M5 336 aa13.09□□□□□ -0.31
CCDC42-202ENST00000539522 RALGPS1Q5JS13 557 aa13.09□□□□□ -0.31
CCDC42-202ENST00000539522 FAXCQ5TGI0 409 aa13.09□□□□□ -0.31
CCDC42-202ENST00000539522 FAM46CQ5VWP2 391 aa13.09□□□□□ -0.31
CCDC42-202ENST00000539522 KCTD11Q693B1 232 aa13.09□□□□□ -0.31
CCDC42-202ENST00000539522 PID1Q7Z2X4 250 aa13.09□□□□□ -0.31
CCDC42-202ENST00000539522 DSG4Q86SJ6 1040 aa13.09□□□□□ -0.31
CCDC42-202ENST00000539522 ATL2Q8NHH9 583 aa13.09□□□□□ -0.31
CCDC42-202ENST00000539522 HCAR2Q8TDS4 363 aa13.09□□□□□ -0.31
CCDC42-202ENST00000539522 RUBCNQ92622 972 aa13.09□□□□□ -0.31
CCDC42-202ENST00000539522 VAT1Q99536 393 aa13.09□□□□□ -0.31
CCDC42-202ENST00000539522 RHOXF2Q9BQY4 288 aa13.09□□□□□ -0.31
CCDC42-202ENST00000539522 DDX47Q9H0S4 455 aaKnown RBP13.09□□□□□ -0.31
CCDC42-202ENST00000539522 ATP13A3Q9H7F0 1226 aa13.09□□□□□ -0.31
CCDC42-202ENST00000539522 KLHL8Q9P2G9 620 aaPredicted RBP13.09□□□□□ -0.31
CCDC42-202ENST00000539522 PCYOX1Q9UHG3 505 aa13.09□□□□□ -0.31
CCDC42-202ENST00000539522 TRHDEQ9UKU6 1024 aa13.09□□□□□ -0.31
CCDC42-202ENST00000539522 CHKBQ9Y259 395 aa13.09□□□□□ -0.31
CCDC42-202ENST00000539522 PPIL1Q9Y3C6 166 aa13.09□□□□□ -0.31
CCDC42-202ENST00000539522 PCDHB9Q9Y5E1 797 aa13.09□□□□□ -0.31
CCDC42-202ENST00000539522 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa13.08□□□□□ -0.32
CCDC42-202ENST00000539522 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP13.08□□□□□ -0.32
CCDC42-202ENST00000539522 LOC285095A0A1B0GVY8 99 aa13.08□□□□□ -0.32
CCDC42-202ENST00000539522 FAM187AA6NFU0 413 aa13.08□□□□□ -0.32
CCDC42-202ENST00000539522 WNT9AO14904 365 aa13.08□□□□□ -0.32
CCDC42-202ENST00000539522 ZNF217O75362 1048 aa13.08□□□□□ -0.32
CCDC42-202ENST00000539522 LHCGRP22888 699 aa13.08□□□□□ -0.32
CCDC42-202ENST00000539522 SERPINA4P29622 427 aa13.08□□□□□ -0.32
CCDC42-202ENST00000539522 PTGER3P43115 390 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 64.8 ms