RNA–Protein interactions for RNA: ENST00000539417.6

RPAIN-206, Transcript of RPA interacting protein, humanhuman

TSL 2

Gene RPAIN, Length 1,471 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPAIN-206ENST00000539417 TMEM259Q4ZIN3 620 aa15.9■□□□□ 0.14
RPAIN-206ENST00000539417 TRIM69Q86WT6 500 aa15.9■□□□□ 0.14
RPAIN-206ENST00000539417 P3H4Q92791 437 aa15.9■□□□□ 0.14
RPAIN-206ENST00000539417 ZNF641Q96N77 438 aaPredicted RBP15.9■□□□□ 0.14
RPAIN-206ENST00000539417 TUBGCP5Q96RT8 1024 aa15.9■□□□□ 0.14
RPAIN-206ENST00000539417 MYOCQ99972 504 aa15.9■□□□□ 0.14
RPAIN-206ENST00000539417 KDM4CQ9H3R0 1056 aa15.9■□□□□ 0.14
RPAIN-206ENST00000539417 ATP13A3Q9H7F0 1226 aa15.9■□□□□ 0.14
RPAIN-206ENST00000539417 CAPN10Q9HC96 672 aa15.9■□□□□ 0.14
RPAIN-206ENST00000539417 PREBQ9HCU5 417 aa15.9■□□□□ 0.14
RPAIN-206ENST00000539417 PCDH12Q9NPG4 1184 aa15.9■□□□□ 0.14
RPAIN-206ENST00000539417 TRMT1Q9NXH9 659 aaKnown RBP15.9■□□□□ 0.14
RPAIN-206ENST00000539417 SEPT10Q9P0V9 454 aa15.9■□□□□ 0.14
RPAIN-206ENST00000539417 R3HDM2Q9Y2K5 976 aaKnown RBP15.9■□□□□ 0.14
RPAIN-206ENST00000539417 DCHS1Q96JQ0 3298 aa15.89■□□□□ 0.13
RPAIN-206ENST00000539417 PI4KAP42356 2102 aa15.89■□□□□ 0.13
RPAIN-206ENST00000539417 A0A0U1RQS6 177 aa15.89■□□□□ 0.13
RPAIN-206ENST00000539417 BCAT2O15382 392 aaPredicted RBP15.89■□□□□ 0.13
RPAIN-206ENST00000539417 HTRA2O43464 458 aaPredicted RBP15.89■□□□□ 0.13
RPAIN-206ENST00000539417 PDHA1P08559 390 aa15.89■□□□□ 0.13
RPAIN-206ENST00000539417 SERPINA4P29622 427 aa15.89■□□□□ 0.13
RPAIN-206ENST00000539417 HSPA9P38646 679 aaKnown RBP15.89■□□□□ 0.13
RPAIN-206ENST00000539417 NR2C2P49116 596 aa15.89■□□□□ 0.13
RPAIN-206ENST00000539417 CSNK1EP49674 416 aaKnown RBP15.89■□□□□ 0.13
RPAIN-206ENST00000539417 WASHC5Q12768 1159 aa15.89■□□□□ 0.13
RPAIN-206ENST00000539417 NOMO1Q15155 1222 aa15.89■□□□□ 0.13
RPAIN-206ENST00000539417 UGP2Q16851 508 aa15.89■□□□□ 0.13
RPAIN-206ENST00000539417 DUOXA1Q1HG43 343 aa15.89■□□□□ 0.13
RPAIN-206ENST00000539417 ALG1LQ6GMV1 187 aa15.89■□□□□ 0.13
RPAIN-206ENST00000539417 SLC23A3Q6PIS1 610 aa15.89■□□□□ 0.13
RPAIN-206ENST00000539417 HORMAD1Q86X24 394 aa15.89■□□□□ 0.13
RPAIN-206ENST00000539417 UBL4BQ8N7F7 174 aa15.89■□□□□ 0.13
RPAIN-206ENST00000539417 ACTL9Q8TC94 416 aa15.89■□□□□ 0.13
RPAIN-206ENST00000539417 ANP32BQ92688 251 aaKnown RBP15.89■□□□□ 0.13
RPAIN-206ENST00000539417 AGAP3Q96P47 875 aa15.89■□□□□ 0.13
RPAIN-206ENST00000539417 CAAP1Q9H8G2 361 aa15.89■□□□□ 0.13
RPAIN-206ENST00000539417 LRRK1Q38SD2 2015 aa15.88■□□□□ 0.13
RPAIN-206ENST00000539417 A0A1B0GTW7 788 aa15.88■□□□□ 0.13
RPAIN-206ENST00000539417 IGLON5A6NGN9 336 aa15.88■□□□□ 0.13
RPAIN-206ENST00000539417 A8MX80 341 aa15.88■□□□□ 0.13
RPAIN-206ENST00000539417 APOC4-APOC2K7ER74 178 aa15.88■□□□□ 0.13
RPAIN-206ENST00000539417 PPP1R12AO14974 1030 aaPredicted RBP15.88■□□□□ 0.13
RPAIN-206ENST00000539417 KHNYNO15037 678 aaKnown RBP15.88■□□□□ 0.13
RPAIN-206ENST00000539417 RAD51BO15315 384 aa15.88■□□□□ 0.13
RPAIN-206ENST00000539417 SLC31A1O15431 190 aa15.88■□□□□ 0.13
RPAIN-206ENST00000539417 AP1G1O43747 822 aa15.88■□□□□ 0.13
RPAIN-206ENST00000539417 NRDCO43847 1150 aa15.88■□□□□ 0.13
RPAIN-206ENST00000539417 APOC2P02655 101 aa15.88■□□□□ 0.13
RPAIN-206ENST00000539417 SERPINF2P08697 491 aa15.88■□□□□ 0.13
RPAIN-206ENST00000539417 PTPN3P26045 913 aa15.88■□□□□ 0.13
RPAIN-206ENST00000539417 KLF1Q13351 362 aaPredicted RBP15.88■□□□□ 0.13
RPAIN-206ENST00000539417 BBS5Q8N3I7 341 aa15.88■□□□□ 0.13
RPAIN-206ENST00000539417 PDCD6IPQ8WUM4 868 aaKnown RBP15.88■□□□□ 0.13
RPAIN-206ENST00000539417 TFB1MQ8WVM0 346 aaKnown RBP15.88■□□□□ 0.13
RPAIN-206ENST00000539417 QKIQ96PU8 341 aaKnown RBP eCLIP15.88■□□□□ 0.13
RPAIN-206ENST00000539417 WRAP53Q9BUR4 548 aaKnown RBP15.88■□□□□ 0.13
RPAIN-206ENST00000539417 TLR10Q9BXR5 811 aa15.88■□□□□ 0.13
RPAIN-206ENST00000539417 POLR1EQ9GZS1 481 aaKnown RBP15.88■□□□□ 0.13
RPAIN-206ENST00000539417 EFR3BQ9Y2G0 817 aa15.88■□□□□ 0.13
RPAIN-206ENST00000539417 COQ6Q9Y2Z9 468 aa15.88■□□□□ 0.13
RPAIN-206ENST00000539417 RAI2Q9Y5P3 530 aa15.88■□□□□ 0.13
RPAIN-206ENST00000539417 A0A1B0GVT2 93 aa15.87■□□□□ 0.13
RPAIN-206ENST00000539417 A0A1W2PR77 199 aa15.87■□□□□ 0.13
RPAIN-206ENST00000539417 UPK3BL1B0FP48 263 aa15.87■□□□□ 0.13
RPAIN-206ENST00000539417 UPK3BL2E5RIL1 263 aa15.87■□□□□ 0.13
RPAIN-206ENST00000539417 F5H423 210 aaPredicted RBP15.87■□□□□ 0.13
RPAIN-206ENST00000539417 CDX4O14627 284 aaPredicted RBP15.87■□□□□ 0.13
RPAIN-206ENST00000539417 KCNK3O14649 394 aa15.87■□□□□ 0.13
RPAIN-206ENST00000539417 RIOK3O14730 519 aaKnown RBP15.87■□□□□ 0.13
RPAIN-206ENST00000539417 MMP20O60882 483 aa15.87■□□□□ 0.13
RPAIN-206ENST00000539417 PAK4O96013 591 aaPredicted RBP15.87■□□□□ 0.13
RPAIN-206ENST00000539417 ENGP17813 658 aa15.87■□□□□ 0.13
RPAIN-206ENST00000539417 RBL1P28749 1068 aa15.87■□□□□ 0.13
RPAIN-206ENST00000539417 CD68P34810 354 aaPredicted RBP15.87■□□□□ 0.13
RPAIN-206ENST00000539417 HOXD12P35452 270 aa15.87■□□□□ 0.13
RPAIN-206ENST00000539417 RALGDSQ12967 914 aa15.87■□□□□ 0.13
RPAIN-206ENST00000539417 GRM3Q14832 879 aa15.87■□□□□ 0.13
RPAIN-206ENST00000539417 C12orf50Q8NA57 414 aaPredicted RBP15.87■□□□□ 0.13
RPAIN-206ENST00000539417 SERAC1Q96JX3 654 aa15.87■□□□□ 0.13
RPAIN-206ENST00000539417 SLC6A14Q9UN76 642 aa15.87■□□□□ 0.13
RPAIN-206ENST00000539417 PCDHB9Q9Y5E1 797 aa15.87■□□□□ 0.13
RPAIN-206ENST00000539417 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP15.86■□□□□ 0.13
RPAIN-206ENST00000539417 LOC105378220A0A1B0GUY1 285 aaPredicted RBP15.86■□□□□ 0.13
RPAIN-206ENST00000539417 H0Y8X5 98 aa15.86■□□□□ 0.13
RPAIN-206ENST00000539417 FZD6O60353 706 aa15.86■□□□□ 0.13
RPAIN-206ENST00000539417 PRLP01236 227 aa15.86■□□□□ 0.13
RPAIN-206ENST00000539417 MMP12P39900 470 aa15.86■□□□□ 0.13
RPAIN-206ENST00000539417 CD86P42081 329 aa15.86■□□□□ 0.13
RPAIN-206ENST00000539417 CLDN2P57739 230 aa15.86■□□□□ 0.13
RPAIN-206ENST00000539417 SKOR1P84550 965 aa15.86■□□□□ 0.13
RPAIN-206ENST00000539417 GRIK2Q13002 908 aa15.86■□□□□ 0.13
RPAIN-206ENST00000539417 RPS6KA1Q15418 735 aa15.86■□□□□ 0.13
RPAIN-206ENST00000539417 AASDHQ4L235 1098 aaPredicted RBP15.86■□□□□ 0.13
RPAIN-206ENST00000539417 CCDC181Q5TID7 509 aa15.86■□□□□ 0.13
RPAIN-206ENST00000539417 NEK5Q6P3R8 708 aa15.86■□□□□ 0.13
RPAIN-206ENST00000539417 BRAT1Q6PJG6 821 aa15.86■□□□□ 0.13
RPAIN-206ENST00000539417 ADAT2Q7Z6V5 191 aaKnown RBP15.86■□□□□ 0.13
RPAIN-206ENST00000539417 PRPF39Q86UA1 669 aaKnown RBP15.86■□□□□ 0.13
RPAIN-206ENST00000539417 SPATA22Q8NHS9 363 aa15.86■□□□□ 0.13
RPAIN-206ENST00000539417 CEP76Q8TAP6 659 aa15.86■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 123.7 ms