RNA–Protein interactions for RNA: ENST00000535313.1

CLSTN3-204, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 787 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-204ENST00000535313 LMX1AQ8TE12 382 aa16.35■□□□□ 0.21
CLSTN3-204ENST00000535313 ZNF641Q96N77 438 aaPredicted RBP16.35■□□□□ 0.21
CLSTN3-204ENST00000535313 DCBLD2Q96PD2 775 aa16.35■□□□□ 0.21
CLSTN3-204ENST00000535313 TUBGCP5Q96RT8 1024 aa16.35■□□□□ 0.21
CLSTN3-204ENST00000535313 PEBP4Q96S96 227 aa16.35■□□□□ 0.21
CLSTN3-204ENST00000535313 KCTD15Q96SI1 283 aaPredicted RBP16.35■□□□□ 0.21
CLSTN3-204ENST00000535313 ABCG4Q9H172 646 aa16.35■□□□□ 0.21
CLSTN3-204ENST00000535313 SP110Q9HB58 689 aa16.35■□□□□ 0.21
CLSTN3-204ENST00000535313 MRPL47Q9HD33 250 aaKnown RBP16.35■□□□□ 0.21
CLSTN3-204ENST00000535313 MYO1AQ9UBC5 1043 aa16.35■□□□□ 0.21
CLSTN3-204ENST00000535313 ATRXP46100 2492 aa16.34■□□□□ 0.21
CLSTN3-204ENST00000535313 A0A087WV48 116 aa16.34■□□□□ 0.21
CLSTN3-204ENST00000535313 DFFAO00273 331 aa16.34■□□□□ 0.21
CLSTN3-204ENST00000535313 RIOK3O14730 519 aaKnown RBP16.34■□□□□ 0.21
CLSTN3-204ENST00000535313 OPA1O60313 960 aa16.34■□□□□ 0.21
CLSTN3-204ENST00000535313 SKILP12757 684 aa16.34■□□□□ 0.21
CLSTN3-204ENST00000535313 MYF5P13349 255 aa16.34■□□□□ 0.21
CLSTN3-204ENST00000535313 ERCC2P18074 760 aa16.34■□□□□ 0.21
CLSTN3-204ENST00000535313 NR1I3Q14994 352 aa16.34■□□□□ 0.21
CLSTN3-204ENST00000535313 UGP2Q16851 508 aa16.34■□□□□ 0.21
CLSTN3-204ENST00000535313 KDM7AQ6ZMT4 941 aa16.34■□□□□ 0.21
CLSTN3-204ENST00000535313 PDZD3Q86UT5 571 aa16.34■□□□□ 0.21
CLSTN3-204ENST00000535313 PAF1Q8N7H5 531 aa16.34■□□□□ 0.21
CLSTN3-204ENST00000535313 IL12RB2Q99665 862 aa16.34■□□□□ 0.21
CLSTN3-204ENST00000535313 CINPQ9BW66 212 aaPredicted RBP16.34■□□□□ 0.21
CLSTN3-204ENST00000535313 SLC13A1Q9BZW2 595 aa16.34■□□□□ 0.21
CLSTN3-204ENST00000535313 TRIM7Q9C029 511 aa16.34■□□□□ 0.21
CLSTN3-204ENST00000535313 ATP13A3Q9H7F0 1226 aa16.34■□□□□ 0.21
CLSTN3-204ENST00000535313 ZWILCHQ9H900 591 aa16.34■□□□□ 0.21
CLSTN3-204ENST00000535313 PCDH12Q9NPG4 1184 aa16.34■□□□□ 0.21
CLSTN3-204ENST00000535313 APOBEC3BQ9UH17 382 aaKnown RBP16.34■□□□□ 0.21
CLSTN3-204ENST00000535313 TSPAN11A1L157 253 aa16.33■□□□□ 0.2
CLSTN3-204ENST00000535313 TPP1O14773 563 aa16.33■□□□□ 0.2
CLSTN3-204ENST00000535313 LRCH4O75427 683 aa16.33■□□□□ 0.2
CLSTN3-204ENST00000535313 SERPINA4P29622 427 aa16.33■□□□□ 0.2
CLSTN3-204ENST00000535313 EIF4A3P38919 411 aaKnown RBP16.33■□□□□ 0.2
CLSTN3-204ENST00000535313 CSNK1DP48730 415 aa16.33■□□□□ 0.2
CLSTN3-204ENST00000535313 HCAR3P49019 387 aa16.33■□□□□ 0.2
CLSTN3-204ENST00000535313 RFTN1Q14699 578 aaPredicted RBP16.33■□□□□ 0.2
CLSTN3-204ENST00000535313 LRRC14Q15048 493 aa16.33■□□□□ 0.2
CLSTN3-204ENST00000535313 IQCB1Q15051 598 aa16.33■□□□□ 0.2
CLSTN3-204ENST00000535313 IRF4Q15306 451 aa16.33■□□□□ 0.2
CLSTN3-204ENST00000535313 CDKN3Q16667 212 aa16.33■□□□□ 0.2
CLSTN3-204ENST00000535313 DEFB133Q30KQ1 61 aa16.33■□□□□ 0.2
CLSTN3-204ENST00000535313 PRRT3Q5FWE3 981 aa16.33■□□□□ 0.2
CLSTN3-204ENST00000535313 FIGNQ5HY92 759 aa16.33■□□□□ 0.2
CLSTN3-204ENST00000535313 FAXCQ5TGI0 409 aa16.33■□□□□ 0.2
CLSTN3-204ENST00000535313 AFMIDQ63HM1 303 aa16.33■□□□□ 0.2
CLSTN3-204ENST00000535313 MACC1Q6ZN28 852 aa16.33■□□□□ 0.2
CLSTN3-204ENST00000535313 LRRC69Q6ZNQ3 347 aa16.33■□□□□ 0.2
CLSTN3-204ENST00000535313 SRLQ86TD4 932 aa16.33■□□□□ 0.2
CLSTN3-204ENST00000535313 CAMK1DQ8IU85 385 aa16.33■□□□□ 0.2
CLSTN3-204ENST00000535313 PHACTR4Q8IZ21 702 aa16.33■□□□□ 0.2
CLSTN3-204ENST00000535313 TP53I13Q8NBR0 393 aaPredicted RBP16.33■□□□□ 0.2
CLSTN3-204ENST00000535313 IFI44Q8TCB0 444 aa16.33■□□□□ 0.2
CLSTN3-204ENST00000535313 MAPK15Q8TD08 544 aa16.33■□□□□ 0.2
CLSTN3-204ENST00000535313 GLMNQ92990 594 aa16.33■□□□□ 0.2
CLSTN3-204ENST00000535313 TBATAQ96M53 351 aa16.33■□□□□ 0.2
CLSTN3-204ENST00000535313 DEPDC7Q96QD5 511 aa16.33■□□□□ 0.2
CLSTN3-204ENST00000535313 MBNL1Q9NR56 388 aaKnown RBP16.33■□□□□ 0.2
CLSTN3-204ENST00000535313 SALL4Q9UJQ4 1053 aa16.33■□□□□ 0.2
CLSTN3-204ENST00000535313 MYLKQ15746 1914 aa16.33■□□□□ 0.2
CLSTN3-204ENST00000535313 LY6G6EA0A0G2JKS1 128 aa16.32■□□□□ 0.2
CLSTN3-204ENST00000535313 CPED1A4D0V7 1026 aa16.32■□□□□ 0.2
CLSTN3-204ENST00000535313 TMEM110-MUSTN1A8MSY1 372 aa16.32■□□□□ 0.2
CLSTN3-204ENST00000535313 H3BRJ5 948 aa16.32■□□□□ 0.2
CLSTN3-204ENST00000535313 RRP8O43159 456 aaKnown RBP16.32■□□□□ 0.2
CLSTN3-204ENST00000535313 LZTS3O60299 673 aaPredicted RBP16.32■□□□□ 0.2
CLSTN3-204ENST00000535313 BUB1BO60566 1050 aaPredicted RBP16.32■□□□□ 0.2
CLSTN3-204ENST00000535313 C6P13671 934 aa16.32■□□□□ 0.2
CLSTN3-204ENST00000535313 PCK1P35558 622 aa16.32■□□□□ 0.2
CLSTN3-204ENST00000535313 ABCG1P45844 678 aa16.32■□□□□ 0.2
CLSTN3-204ENST00000535313 BLKP51451 505 aa16.32■□□□□ 0.2
CLSTN3-204ENST00000535313 PPARDQ03181 441 aa16.32■□□□□ 0.2
CLSTN3-204ENST00000535313 IL10RBQ08334 325 aa16.32■□□□□ 0.2
CLSTN3-204ENST00000535313 ACAP1Q15027 740 aa16.32■□□□□ 0.2
CLSTN3-204ENST00000535313 NR0B2Q15466 257 aa16.32■□□□□ 0.2
CLSTN3-204ENST00000535313 TDRD12Q587J7 1177 aaKnown RBP16.32■□□□□ 0.2
CLSTN3-204ENST00000535313 CDCP2Q5VXM1 449 aa16.32■□□□□ 0.2
CLSTN3-204ENST00000535313 CYP4V2Q6ZWL3 525 aaPredicted RBP16.32■□□□□ 0.2
CLSTN3-204ENST00000535313 ARHGAP12Q8IWW6 846 aa16.32■□□□□ 0.2
CLSTN3-204ENST00000535313 RBFAQ8N0V3 343 aa16.32■□□□□ 0.2
CLSTN3-204ENST00000535313 LZTR1Q8N653 840 aa16.32■□□□□ 0.2
CLSTN3-204ENST00000535313 NPWQ8N729 165 aa16.32■□□□□ 0.2
CLSTN3-204ENST00000535313 TSEN2Q8NCE0 465 aaKnown RBP16.32■□□□□ 0.2
CLSTN3-204ENST00000535313 FUCA2Q9BTY2 467 aa16.32■□□□□ 0.2
CLSTN3-204ENST00000535313 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP16.32■□□□□ 0.2
CLSTN3-204ENST00000535313 ISCUQ9H1K1 167 aa16.32■□□□□ 0.2
CLSTN3-204ENST00000535313 CWC15Q9P013 229 aaKnown RBP16.32■□□□□ 0.2
CLSTN3-204ENST00000535313 ATP8A1Q9Y2Q0 1164 aa16.32■□□□□ 0.2
CLSTN3-204ENST00000535313 COQ6Q9Y2Z9 468 aa16.32■□□□□ 0.2
CLSTN3-204ENST00000535313 BZW2Q9Y6E2 419 aaKnown RBP16.32■□□□□ 0.2
CLSTN3-204ENST00000535313 U3KQA8 63 aa16.32■□□□□ 0.2
CLSTN3-204ENST00000535313 BRINP1O60477 761 aa16.31■□□□□ 0.2
CLSTN3-204ENST00000535313 GCATO75600 419 aa16.31■□□□□ 0.2
CLSTN3-204ENST00000535313 ANXA6P08133 673 aa16.31■□□□□ 0.2
CLSTN3-204ENST00000535313 HTR1BP28222 390 aa16.31■□□□□ 0.2
CLSTN3-204ENST00000535313 ACTN2P35609 894 aa16.31■□□□□ 0.2
CLSTN3-204ENST00000535313 MMP12P39900 470 aa16.31■□□□□ 0.2
CLSTN3-204ENST00000535313 ARL4AP40617 200 aa16.31■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms