RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-231ENST00000531110 RUFY2Q8WXA3 655 aa5.76□□□□□ -1.49
CD44-231ENST00000531110 ATG4AQ8WYN0 398 aa5.76□□□□□ -1.49
CD44-231ENST00000531110 HERVK_113Q902F9 699 aa5.76□□□□□ -1.49
CD44-231ENST00000531110 EME1Q96AY2 570 aa5.76□□□□□ -1.49
CD44-231ENST00000531110 DHX58Q96C10 678 aa5.76□□□□□ -1.49
CD44-231ENST00000531110 RSPRY1Q96DX4 576 aa5.76□□□□□ -1.49
CD44-231ENST00000531110 MAELQ96JY0 434 aaKnown RBP5.76□□□□□ -1.49
CD44-231ENST00000531110 GBP5Q96PP8 586 aa5.76□□□□□ -1.49
CD44-231ENST00000531110 DUSP26Q9BV47 211 aa5.76□□□□□ -1.49
CD44-231ENST00000531110 CARD6Q9BX69 1037 aa5.76□□□□□ -1.49
CD44-231ENST00000531110 KRT23Q9C075 422 aa5.76□□□□□ -1.49
CD44-231ENST00000531110 C6orf62Q9GZU0 229 aaPredicted RBP5.76□□□□□ -1.49
CD44-231ENST00000531110 CXorf36Q9H7Y0 433 aa5.76□□□□□ -1.49
CD44-231ENST00000531110 ARNT2Q9HBZ2 717 aa5.76□□□□□ -1.49
CD44-231ENST00000531110 PNPLA8Q9NP80 782 aa5.76□□□□□ -1.49
CD44-231ENST00000531110 TRMT13Q9NUP7 481 aaKnown RBP5.76□□□□□ -1.49
CD44-231ENST00000531110 KCNN3Q9UGI6 736 aa5.76□□□□□ -1.49
CD44-231ENST00000531110 SLC12A4Q9UP95 1085 aa5.76□□□□□ -1.49
CD44-231ENST00000531110 INSL6Q9Y581 213 aa5.76□□□□□ -1.49
CD44-231ENST00000531110 ANGPTL3Q9Y5C1 460 aa5.76□□□□□ -1.49
CD44-231ENST00000531110 PCDHGB6Q9Y5F9 930 aa5.76□□□□□ -1.49
CD44-231ENST00000531110 CDY1Q9Y6F8 540 aa5.76□□□□□ -1.49
CD44-231ENST00000531110 AK9Q5TCS8 1911 aa5.76□□□□□ -1.49
CD44-231ENST00000531110 MROH5Q6ZUA9 1318 aa5.75□□□□□ -1.49
CD44-231ENST00000531110 SALL3Q9BXA9 1300 aa5.75□□□□□ -1.49
CD44-231ENST00000531110 ADGRL3Q9HAR2 1447 aa5.75□□□□□ -1.49
CD44-231ENST00000531110 EFCAB6Q5THR3 1501 aa5.75□□□□□ -1.49
CD44-231ENST00000531110 TRAV6A0A075B6T7 132 aa5.75□□□□□ -1.49
CD44-231ENST00000531110 CYP2D7A0A087X1C5 515 aa5.75□□□□□ -1.49
CD44-231ENST00000531110 CCDC69A6NI79 296 aa5.75□□□□□ -1.49
CD44-231ENST00000531110 ZAR1LA6NP61 321 aa5.75□□□□□ -1.49
CD44-231ENST00000531110 PI4K2BG5E9Z4 385 aa5.75□□□□□ -1.49
CD44-231ENST00000531110 PSMD9O00233 223 aa5.75□□□□□ -1.49
CD44-231ENST00000531110 FBP2O00757 339 aa5.75□□□□□ -1.49
CD44-231ENST00000531110 NDUFA2O43678 99 aa5.75□□□□□ -1.49
CD44-231ENST00000531110 SPOPO43791 374 aa5.75□□□□□ -1.49
CD44-231ENST00000531110 PQBP1O60828 265 aaKnown RBP5.75□□□□□ -1.49
CD44-231ENST00000531110 GPC4O75487 556 aa5.75□□□□□ -1.49
CD44-231ENST00000531110 TJP3O95049 919 aa5.75□□□□□ -1.49
CD44-231ENST00000531110 IL18RAPO95256 599 aa5.75□□□□□ -1.49
CD44-231ENST00000531110 OXSR1O95747 527 aaPredicted RBP5.75□□□□□ -1.49
CD44-231ENST00000531110 CD4P01730 458 aa5.75□□□□□ -1.49
CD44-231ENST00000531110 HLA-DRAP01903 254 aa5.75□□□□□ -1.49
CD44-231ENST00000531110 CSF1RP07333 972 aa5.75□□□□□ -1.49
CD44-231ENST00000531110 CHRM2P08172 466 aa5.75□□□□□ -1.49
CD44-231ENST00000531110 ABCB1P08183 1280 aaPredicted RBP5.75□□□□□ -1.49
CD44-231ENST00000531110 SCG2P13521 617 aa5.75□□□□□ -1.49
CD44-231ENST00000531110 IL1R1P14778 569 aa5.75□□□□□ -1.49
CD44-231ENST00000531110 HNRNPFP52597 415 aaKnown RBP5.75□□□□□ -1.49
CD44-231ENST00000531110 POLGP54098 1239 aaPredicted RBP5.75□□□□□ -1.49
CD44-231ENST00000531110 HSD17B7P56937 341 aa5.75□□□□□ -1.49
CD44-231ENST00000531110 POLR2GP62487 172 aaKnown RBP eCLIP5.75□□□□□ -1.49
CD44-231ENST00000531110 PLIN5Q00G26 463 aa5.75□□□□□ -1.49
CD44-231ENST00000531110 LRMPQ12912 555 aa5.75□□□□□ -1.49
CD44-231ENST00000531110 IFIT5Q13325 482 aaKnown RBP5.75□□□□□ -1.49
CD44-231ENST00000531110 PPP2R5CQ13362 524 aa5.75□□□□□ -1.49
CD44-231ENST00000531110 PRKG1Q13976 671 aa5.75□□□□□ -1.49
CD44-231ENST00000531110 LETM2Q2VYF4 491 aa5.75□□□□□ -1.49
CD44-231ENST00000531110 KRTAP15-1Q3LI76 137 aa5.75□□□□□ -1.49
CD44-231ENST00000531110 ZIK1Q3SY52 487 aaPredicted RBP5.75□□□□□ -1.49
CD44-231ENST00000531110 HSP90AA5PQ58FG0 334 aa5.75□□□□□ -1.49
CD44-231ENST00000531110 PPP6R3Q5H9R7 873 aaPredicted RBP5.75□□□□□ -1.49
CD44-231ENST00000531110 AARS2Q5JTZ9 985 aaKnown RBP5.75□□□□□ -1.49
CD44-231ENST00000531110 KRBOX4Q5JUW0 171 aa5.75□□□□□ -1.49
CD44-231ENST00000531110 CERCAMQ5T4B2 595 aa5.75□□□□□ -1.49
CD44-231ENST00000531110 SLX4IPQ5VYV7 408 aa5.75□□□□□ -1.49
CD44-231ENST00000531110 FAM109BQ6ICB4 259 aaPredicted RBP5.75□□□□□ -1.49
CD44-231ENST00000531110 HIBCHQ6NVY1 386 aaPredicted RBP5.75□□□□□ -1.49
CD44-231ENST00000531110 CRTC1Q6UUV9 634 aa5.75□□□□□ -1.49
CD44-231ENST00000531110 USP50Q70EL3 339 aaPredicted RBP5.75□□□□□ -1.49
CD44-231ENST00000531110 ZNF551Q7Z340 670 aaPredicted RBP5.75□□□□□ -1.49
CD44-231ENST00000531110 GALNT7Q86SF2 657 aa5.75□□□□□ -1.49
CD44-231ENST00000531110 ADAMTSL2Q86TH1 951 aa5.75□□□□□ -1.49
CD44-231ENST00000531110 PRIMA1Q86XR5 153 aa5.75□□□□□ -1.49
CD44-231ENST00000531110 SLC44A2Q8IWA5 706 aaPredicted RBP5.75□□□□□ -1.49
CD44-231ENST00000531110 PM20D2Q8IYS1 436 aa5.75□□□□□ -1.49
CD44-231ENST00000531110 ENDOVQ8N8Q3 282 aaKnown RBP5.75□□□□□ -1.49
CD44-231ENST00000531110 KBTBD3Q8NAB2 608 aa5.75□□□□□ -1.49
CD44-231ENST00000531110 BPIFB1Q8TDL5 484 aa5.75□□□□□ -1.49
CD44-231ENST00000531110 ZNF473Q8WTR7 871 aaKnown RBP5.75□□□□□ -1.49
CD44-231ENST00000531110 TFAP2BQ92481 460 aa5.75□□□□□ -1.49
CD44-231ENST00000531110 CCT6BQ92526 530 aa5.75□□□□□ -1.49
CD44-231ENST00000531110 METTL2AQ96IZ6 378 aaKnown RBP5.75□□□□□ -1.49
CD44-231ENST00000531110 SPATA17Q96L03 361 aa5.75□□□□□ -1.49
CD44-231ENST00000531110 NUDCD1Q96RS6 583 aa5.75□□□□□ -1.49
CD44-231ENST00000531110 KIFC3Q9BVG8 833 aa5.75□□□□□ -1.49
CD44-231ENST00000531110 RAD21L1Q9H4I0 556 aa5.75□□□□□ -1.49
CD44-231ENST00000531110 MROH8Q9H579 483 aa5.75□□□□□ -1.49
CD44-231ENST00000531110 DENND2DQ9H6A0 471 aaPredicted RBP5.75□□□□□ -1.49
CD44-231ENST00000531110 ANKZF1Q9H8Y5 726 aa5.75□□□□□ -1.49
CD44-231ENST00000531110 UBN1Q9NPG3 1134 aa5.75□□□□□ -1.49
CD44-231ENST00000531110 SDHAF3Q9NRP4 125 aa5.75□□□□□ -1.49
CD44-231ENST00000531110 FARSBQ9NSD9 589 aaKnown RBP5.75□□□□□ -1.49
CD44-231ENST00000531110 SERTAD4Q9NUC0 356 aa5.75□□□□□ -1.49
CD44-231ENST00000531110 THEGQ9P2T0 379 aa5.75□□□□□ -1.49
CD44-231ENST00000531110 DNMT3BQ9UBC3 853 aaKnown RBP5.75□□□□□ -1.49
CD44-231ENST00000531110 LAMP5Q9UJQ1 280 aa5.75□□□□□ -1.49
CD44-231ENST00000531110 CDC23Q9UJX2 597 aa5.75□□□□□ -1.49
CD44-231ENST00000531110 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP5.75□□□□□ -1.49
CD44-231ENST00000531110 PADI4Q9UM07 663 aa5.75□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms