RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 IL4RP24394 825 aa10.28□□□□□ -0.76
VPS28-204ENST00000526054 CTNNA2P26232 953 aa10.28□□□□□ -0.76
VPS28-204ENST00000526054 CTNNA1P35221 906 aaKnown RBP10.28□□□□□ -0.76
VPS28-204ENST00000526054 NUDT1P36639 197 aa10.28□□□□□ -0.76
VPS28-204ENST00000526054 ACADVLP49748 655 aa10.28□□□□□ -0.76
VPS28-204ENST00000526054 CLDN6P56747 220 aa10.28□□□□□ -0.76
VPS28-204ENST00000526054 CNTN1Q12860 1018 aa10.28□□□□□ -0.76
VPS28-204ENST00000526054 SETMARQ53H47 684 aaPredicted RBP10.28□□□□□ -0.76
VPS28-204ENST00000526054 AGBL4Q5VU57 503 aa10.28□□□□□ -0.76
VPS28-204ENST00000526054 AFMIDQ63HM1 303 aa10.28□□□□□ -0.76
VPS28-204ENST00000526054 PRPF39Q86UA1 669 aaKnown RBP10.28□□□□□ -0.76
VPS28-204ENST00000526054 TRIM69Q86WT6 500 aa10.28□□□□□ -0.76
VPS28-204ENST00000526054 CCDC50Q8IVM0 306 aa10.28□□□□□ -0.76
VPS28-204ENST00000526054 ARHGAP12Q8IWW6 846 aa10.28□□□□□ -0.76
VPS28-204ENST00000526054 ATPAF2Q8N5M1 289 aa10.28□□□□□ -0.76
VPS28-204ENST00000526054 PCDH20Q8N6Y1 951 aaKnown RBP10.28□□□□□ -0.76
VPS28-204ENST00000526054 UBL4BQ8N7F7 174 aa10.28□□□□□ -0.76
VPS28-204ENST00000526054 LRRC57Q8N9N7 239 aa10.28□□□□□ -0.76
VPS28-204ENST00000526054 MFSD2AQ8NA29 543 aa10.28□□□□□ -0.76
VPS28-204ENST00000526054 PCDH19Q8TAB3 1148 aa10.28□□□□□ -0.76
VPS28-204ENST00000526054 RNF25Q96BH1 459 aaPredicted RBP10.28□□□□□ -0.76
VPS28-204ENST00000526054 LRIG1Q96JA1 1093 aa10.28□□□□□ -0.76
VPS28-204ENST00000526054 ZNF830Q96NB3 372 aaPredicted RBP10.28□□□□□ -0.76
VPS28-204ENST00000526054 RNF157Q96PX1 679 aa10.28□□□□□ -0.76
VPS28-204ENST00000526054 ALS2CR12Q96Q35 445 aa10.28□□□□□ -0.76
VPS28-204ENST00000526054 SLC39A8Q9C0K1 460 aa10.28□□□□□ -0.76
VPS28-204ENST00000526054 KLC2Q9H0B6 622 aa10.28□□□□□ -0.76
VPS28-204ENST00000526054 KDM4CQ9H3R0 1056 aa10.28□□□□□ -0.76
VPS28-204ENST00000526054 ERVMER34-1Q9H9K5 563 aa10.28□□□□□ -0.76
VPS28-204ENST00000526054 LZTFL1Q9NQ48 299 aa10.28□□□□□ -0.76
VPS28-204ENST00000526054 ETNK2Q9NVF9 386 aa10.28□□□□□ -0.76
VPS28-204ENST00000526054 UBA2Q9UBT2 640 aaPredicted RBP10.28□□□□□ -0.76
VPS28-204ENST00000526054 SARDHQ9UL12 918 aa10.28□□□□□ -0.76
VPS28-204ENST00000526054 DMTF1Q9Y222 760 aa10.28□□□□□ -0.76
VPS28-204ENST00000526054 PPP2R2CQ9Y2T4 447 aa10.28□□□□□ -0.76
VPS28-204ENST00000526054 FARP1Q9Y4F1 1045 aaPredicted RBP10.28□□□□□ -0.76
VPS28-204ENST00000526054 CAPN6Q9Y6Q1 641 aa10.28□□□□□ -0.76
VPS28-204ENST00000526054 DOCK9Q9BZ29 2069 aa10.27□□□□□ -0.76
VPS28-204ENST00000526054 MYLKQ15746 1914 aa10.27□□□□□ -0.76
VPS28-204ENST00000526054 A0A087WV48 116 aa10.27□□□□□ -0.77
VPS28-204ENST00000526054 MIF4GDA9UHW6 222 aaKnown RBP10.27□□□□□ -0.77
VPS28-204ENST00000526054 K7ERQ8 282 aa10.27□□□□□ -0.77
VPS28-204ENST00000526054 APOL1O14791 398 aa10.27□□□□□ -0.77
VPS28-204ENST00000526054 ZSCAN12O43309 604 aa10.27□□□□□ -0.77
VPS28-204ENST00000526054 MFSD11O43934 449 aa10.27□□□□□ -0.77
VPS28-204ENST00000526054 PRAMEF11O60813 436 aa10.27□□□□□ -0.77
VPS28-204ENST00000526054 ZRANB2O95218 330 aaKnown RBP eCLIP10.27□□□□□ -0.772e-7■■□□□ 13.6
VPS28-204ENST00000526054 MT-CO1P00395 513 aa10.27□□□□□ -0.77
VPS28-204ENST00000526054 C1SP09871 688 aa10.27□□□□□ -0.77
VPS28-204ENST00000526054 JUPP14923 745 aa10.27□□□□□ -0.77
VPS28-204ENST00000526054 ZFXP17010 805 aaPredicted RBP10.27□□□□□ -0.77
VPS28-204ENST00000526054 CETN2P41208 172 aa10.27□□□□□ -0.77
VPS28-204ENST00000526054 MARCKSL1P49006 195 aa10.27□□□□□ -0.77
VPS28-204ENST00000526054 PAPOLAP51003 745 aaKnown RBP10.27□□□□□ -0.77
VPS28-204ENST00000526054 IL10RBQ08334 325 aa10.27□□□□□ -0.77
VPS28-204ENST00000526054 OVGP1Q12889 678 aa10.27□□□□□ -0.77
VPS28-204ENST00000526054 TFDP2Q14188 446 aa10.27□□□□□ -0.77
VPS28-204ENST00000526054 STAT4Q14765 748 aa10.27□□□□□ -0.77
VPS28-204ENST00000526054 PAFAH1B3Q15102 231 aaKnown RBP10.27□□□□□ -0.77
VPS28-204ENST00000526054 INO80DQ53TQ3 878 aaPredicted RBP10.27□□□□□ -0.77
VPS28-204ENST00000526054 HES3Q5TGS1 186 aa10.27□□□□□ -0.77
VPS28-204ENST00000526054 NCBP2-AS2Q69YL0 99 aa10.27□□□□□ -0.77
VPS28-204ENST00000526054 SPOCD1Q6ZMY3 1216 aa10.27□□□□□ -0.77
VPS28-204ENST00000526054 NT5DC3Q86UY8 548 aa10.27□□□□□ -0.77
VPS28-204ENST00000526054 IQCHQ86VS3 1027 aa10.27□□□□□ -0.77
VPS28-204ENST00000526054 SPATS2Q86XZ4 545 aaKnown RBP10.27□□□□□ -0.77
VPS28-204ENST00000526054 RFX6Q8HWS3 928 aa10.27□□□□□ -0.77
VPS28-204ENST00000526054 RCOR2Q8IZ40 523 aa10.27□□□□□ -0.77
VPS28-204ENST00000526054 EXD1Q8NHP7 514 aa10.27□□□□□ -0.77
VPS28-204ENST00000526054 PIP4K2CQ8TBX8 421 aa10.27□□□□□ -0.77
VPS28-204ENST00000526054 UBE2Q2Q8WVN8 375 aa10.27□□□□□ -0.77
VPS28-204ENST00000526054 KRT35Q92764 455 aa10.27□□□□□ -0.77
VPS28-204ENST00000526054 DCBLD2Q96PD2 775 aa10.27□□□□□ -0.77
VPS28-204ENST00000526054 PREBQ9HCU5 417 aa10.27□□□□□ -0.77
VPS28-204ENST00000526054 IPO11Q9UI26 975 aaKnown RBP10.27□□□□□ -0.77
VPS28-204ENST00000526054 PPM1HQ9ULR3 514 aa10.27□□□□□ -0.77
VPS28-204ENST00000526054 FCF1Q9Y324 198 aaKnown RBP10.27□□□□□ -0.77
VPS28-204ENST00000526054 MFHAS1Q9Y4C4 1052 aa10.27□□□□□ -0.77
VPS28-204ENST00000526054 PCDHA3Q9Y5H8 950 aa10.27□□□□□ -0.77
VPS28-204ENST00000526054 C3orf70A6NLC5 250 aaPredicted RBP10.26□□□□□ -0.77
VPS28-204ENST00000526054 PRAMEF26H0Y7S4 382 aa10.26□□□□□ -0.77
VPS28-204ENST00000526054 MCF2LO15068 1137 aa10.26□□□□□ -0.77
VPS28-204ENST00000526054 SMAD6O43541 496 aaKnown RBP10.26□□□□□ -0.77
VPS28-204ENST00000526054 SDC3O75056 442 aa10.26□□□□□ -0.77
VPS28-204ENST00000526054 TMCC1O94876 653 aa10.26□□□□□ -0.77
VPS28-204ENST00000526054 FTCDO95954 541 aa10.26□□□□□ -0.77
VPS28-204ENST00000526054 CD160O95971 181 aa10.26□□□□□ -0.77
VPS28-204ENST00000526054 IGSF6O95976 241 aa10.26□□□□□ -0.77
VPS28-204ENST00000526054 GSRP00390 522 aa10.26□□□□□ -0.77
VPS28-204ENST00000526054 MX2P20592 715 aa10.26□□□□□ -0.77
VPS28-204ENST00000526054 CDKN2BP42772 138 aa10.26□□□□□ -0.77
VPS28-204ENST00000526054 ABCG1P45844 678 aa10.26□□□□□ -0.77
VPS28-204ENST00000526054 RXRGP48443 463 aa10.26□□□□□ -0.77
VPS28-204ENST00000526054 DNA2P51530 1060 aa10.26□□□□□ -0.77
VPS28-204ENST00000526054 RWDD2BP57060 319 aa10.26□□□□□ -0.77
VPS28-204ENST00000526054 COPS2P61201 443 aa10.26□□□□□ -0.77
VPS28-204ENST00000526054 RHOAP61586 193 aa10.26□□□□□ -0.77
VPS28-204ENST00000526054 SNRPD1P62314 119 aaKnown RBP10.26□□□□□ -0.77
VPS28-204ENST00000526054 GALNT2Q10471 571 aa10.26□□□□□ -0.77
VPS28-204ENST00000526054 BNIP3Q12983 259 aa10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms