RNA–Protein interactions for RNA: ENST00000515397.1

VCAN-212, Transcript of versican, humanhuman

TSL 2

Gene VCAN, Length 536 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-212ENST00000515397 NYAP1Q6ZVC0 841 aa11.6□□□□□ -0.55
VCAN-212ENST00000515397 IQCHQ86VS3 1027 aa11.6□□□□□ -0.55
VCAN-212ENST00000515397 SLC25A45Q8N413 288 aa11.6□□□□□ -0.55
VCAN-212ENST00000515397 ATPAF2Q8N5M1 289 aa11.6□□□□□ -0.55
VCAN-212ENST00000515397 LZTR1Q8N653 840 aa11.6□□□□□ -0.55
VCAN-212ENST00000515397 PQLC3Q8N755 202 aa11.6□□□□□ -0.55
VCAN-212ENST00000515397 CXorf40AQ8TE69 158 aa11.6□□□□□ -0.55
VCAN-212ENST00000515397 PDCD6IPQ8WUM4 868 aaKnown RBP11.6□□□□□ -0.55
VCAN-212ENST00000515397 RAB7BQ96AH8 199 aa11.6□□□□□ -0.55
VCAN-212ENST00000515397 SMIM14Q96QK8 99 aa11.6□□□□□ -0.55
VCAN-212ENST00000515397 ATP13A3Q9H7F0 1226 aa11.6□□□□□ -0.55
VCAN-212ENST00000515397 NOD2Q9HC29 1040 aa11.6□□□□□ -0.55
VCAN-212ENST00000515397 NT5MQ9NPB1 228 aa11.6□□□□□ -0.55
VCAN-212ENST00000515397 TOR4AQ9NXH8 423 aa11.6□□□□□ -0.55
VCAN-212ENST00000515397 DKK3Q9UBP4 350 aa11.6□□□□□ -0.55
VCAN-212ENST00000515397 SEPT3Q9UH03 358 aa11.6□□□□□ -0.55
VCAN-212ENST00000515397 KLF15Q9UIH9 416 aa11.6□□□□□ -0.55
VCAN-212ENST00000515397 TPX2Q9ULW0 747 aaKnown RBP11.6□□□□□ -0.55
VCAN-212ENST00000515397 HS3ST3A1Q9Y663 406 aa11.6□□□□□ -0.55
VCAN-212ENST00000515397 FRYQ5TBA9 3013 aa11.6□□□□□ -0.55
VCAN-212ENST00000515397 ARID1BQ8NFD5 2236 aaPredicted RBP11.6□□□□□ -0.55
VCAN-212ENST00000515397 LRRD1A4D1F6 860 aa11.59□□□□□ -0.55
VCAN-212ENST00000515397 C1QTNF9BB2RNN3 333 aa11.59□□□□□ -0.55
VCAN-212ENST00000515397 TRIM38O00635 465 aa11.59□□□□□ -0.55
VCAN-212ENST00000515397 RIOK3O14730 519 aaKnown RBP11.59□□□□□ -0.55
VCAN-212ENST00000515397 SCAMP1O15126 338 aa11.59□□□□□ -0.55
VCAN-212ENST00000515397 FFAR2O15552 330 aa11.59□□□□□ -0.55
VCAN-212ENST00000515397 DFNA5O60443 496 aa11.59□□□□□ -0.55
VCAN-212ENST00000515397 C1QTNF9P0C862 333 aa11.59□□□□□ -0.55
VCAN-212ENST00000515397 NOP2P46087 812 aaKnown RBP11.59□□□□□ -0.55
VCAN-212ENST00000515397 ARRB1P49407 418 aaPredicted RBP11.59□□□□□ -0.55
VCAN-212ENST00000515397 LIG3P49916 1009 aa11.59□□□□□ -0.55
VCAN-212ENST00000515397 GBE1Q04446 702 aa11.59□□□□□ -0.55
VCAN-212ENST00000515397 ITKQ08881 620 aa11.59□□□□□ -0.55
VCAN-212ENST00000515397 PDE1CQ14123 709 aaPredicted RBP11.59□□□□□ -0.55
VCAN-212ENST00000515397 ZNF235Q14590 738 aa11.59□□□□□ -0.55
VCAN-212ENST00000515397 NPNTQ6UXI9 565 aa11.59□□□□□ -0.55
VCAN-212ENST00000515397 ABI3BPQ7Z7G0 1075 aa11.59□□□□□ -0.55
VCAN-212ENST00000515397 BAHD1Q8TBE0 780 aaPredicted RBP11.59□□□□□ -0.55
VCAN-212ENST00000515397 FAM71BQ8TC56 605 aa11.59□□□□□ -0.55
VCAN-212ENST00000515397 RNF25Q96BH1 459 aaPredicted RBP11.59□□□□□ -0.55
VCAN-212ENST00000515397 CENPTQ96BT3 561 aa11.59□□□□□ -0.55
VCAN-212ENST00000515397 PSKH2Q96QS6 385 aa11.59□□□□□ -0.55
VCAN-212ENST00000515397 TCEAL2Q9H3H9 227 aaPredicted RBP11.59□□□□□ -0.55
VCAN-212ENST00000515397 SCUBE2Q9NQ36 999 aa11.59□□□□□ -0.55
VCAN-212ENST00000515397 DNAJC28Q9NX36 388 aa11.59□□□□□ -0.55
VCAN-212ENST00000515397 PNMA8BQ9ULN7 279 aaPredicted RBP11.59□□□□□ -0.55
VCAN-212ENST00000515397 FAM149AA5PLN7 773 aa11.58□□□□□ -0.56
VCAN-212ENST00000515397 SOWAHDA6NJG2 315 aa11.58□□□□□ -0.56
VCAN-212ENST00000515397 A6NNZ2 444 aa11.58□□□□□ -0.56
VCAN-212ENST00000515397 TRAFD1O14545 582 aaPredicted RBP11.58□□□□□ -0.56
VCAN-212ENST00000515397 FPGTO14772 594 aa11.58□□□□□ -0.56
VCAN-212ENST00000515397 KRT37O76014 449 aa11.58□□□□□ -0.56
VCAN-212ENST00000515397 NEBLO76041 1014 aa11.58□□□□□ -0.56
VCAN-212ENST00000515397 TM7SF2O76062 418 aa11.58□□□□□ -0.56
VCAN-212ENST00000515397 LDOC1O95751 146 aaPredicted RBP11.58□□□□□ -0.56
VCAN-212ENST00000515397 KRT7P08729 469 aa11.58□□□□□ -0.56
VCAN-212ENST00000515397 C6P13671 934 aa11.58□□□□□ -0.56
VCAN-212ENST00000515397 DGKAP23743 735 aa11.58□□□□□ -0.56
VCAN-212ENST00000515397 SERPINA4P29622 427 aa11.58□□□□□ -0.56
VCAN-212ENST00000515397 IGFALSP35858 605 aa11.58□□□□□ -0.56
VCAN-212ENST00000515397 RXRGP48443 463 aa11.58□□□□□ -0.56
VCAN-212ENST00000515397 CSNK1DP48730 415 aa11.58□□□□□ -0.56
VCAN-212ENST00000515397 SHC2P98077 582 aa11.58□□□□□ -0.56
VCAN-212ENST00000515397 NSUN2Q08J23 767 aaKnown RBP eCLIP11.58□□□□□ -0.56
VCAN-212ENST00000515397 OVGP1Q12889 678 aa11.58□□□□□ -0.56
VCAN-212ENST00000515397 HNRNPDQ14103 355 aaKnown RBP11.58□□□□□ -0.56
VCAN-212ENST00000515397 FZD2Q14332 565 aa11.58□□□□□ -0.56
VCAN-212ENST00000515397 IHHQ14623 411 aa11.58□□□□□ -0.56
VCAN-212ENST00000515397 RFTN1Q14699 578 aaPredicted RBP11.58□□□□□ -0.56
VCAN-212ENST00000515397 WSCD2Q2TBF2 565 aa11.58□□□□□ -0.56
VCAN-212ENST00000515397 TMEM52BQ4KMG9 183 aa11.58□□□□□ -0.56
VCAN-212ENST00000515397 MARC1Q5VT66 337 aa11.58□□□□□ -0.56
VCAN-212ENST00000515397 DENND2CQ68D51 928 aa11.58□□□□□ -0.56
VCAN-212ENST00000515397 KANSL1Q7Z3B3 1105 aa11.58□□□□□ -0.56
VCAN-212ENST00000515397 RAB44Q7Z6P3 723 aaPredicted RBP11.58□□□□□ -0.56
VCAN-212ENST00000515397 CCNYQ8ND76 341 aa11.58□□□□□ -0.56
VCAN-212ENST00000515397 RFFLQ8WZ73 363 aa11.58□□□□□ -0.56
VCAN-212ENST00000515397 CNDP2Q96KP4 475 aaKnown RBP11.58□□□□□ -0.56
VCAN-212ENST00000515397 ZNF641Q96N77 438 aaPredicted RBP11.58□□□□□ -0.56
VCAN-212ENST00000515397 LENG8Q96PV6 779 aaPredicted RBP11.58□□□□□ -0.56
VCAN-212ENST00000515397 CDC6Q99741 560 aa11.58□□□□□ -0.56
VCAN-212ENST00000515397 ERVMER34-1Q9H9K5 563 aa11.58□□□□□ -0.56
VCAN-212ENST00000515397 FTSJ1Q9UET6 329 aa11.58□□□□□ -0.56
VCAN-212ENST00000515397 APOBEC2Q9Y235 224 aaKnown RBP11.58□□□□□ -0.56
VCAN-212ENST00000515397 TTLL3Q9Y4R7 772 aa11.58□□□□□ -0.56
VCAN-212ENST00000515397 KNTC1P50748 2209 aa11.58□□□□□ -0.56
VCAN-212ENST00000515397 TSPAN11A1L157 253 aa11.57□□□□□ -0.56
VCAN-212ENST00000515397 RCCD1A6NED2 376 aa11.57□□□□□ -0.56
VCAN-212ENST00000515397 C3orf70A6NLC5 250 aaPredicted RBP11.57□□□□□ -0.56
VCAN-212ENST00000515397 ENC1O14682 589 aa11.57□□□□□ -0.56
VCAN-212ENST00000515397 TNFSF14O43557 240 aa11.57□□□□□ -0.56
VCAN-212ENST00000515397 SIGLEC6O43699 453 aa11.57□□□□□ -0.56
VCAN-212ENST00000515397 LZTS3O60299 673 aaPredicted RBP11.57□□□□□ -0.56
VCAN-212ENST00000515397 MAGEC1O60732 1142 aa11.57□□□□□ -0.56
VCAN-212ENST00000515397 PIAS2O75928 621 aa11.57□□□□□ -0.56
VCAN-212ENST00000515397 KRT1P04264 644 aa11.57□□□□□ -0.56
VCAN-212ENST00000515397 PCCBP05166 539 aa11.57□□□□□ -0.56
VCAN-212ENST00000515397 CTPS1P17812 591 aa11.57□□□□□ -0.56
VCAN-212ENST00000515397 CR2P20023 1033 aa11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms