RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 DGCR6Q14129 220 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 BMT2Q1RMZ1 405 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 LRRC24Q50LG9 513 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 HIST2H3PS2Q5TEC6 136 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 ZNF517Q6ZMY9 492 aaPredicted RBP3.6□□□□□ -1.83
USP53-205ENST00000509769 TSPAN33Q86UF1 283 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 TMEM132CQ8N3T6 1108 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 KIF2BQ8N4N8 673 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 NSUN7Q8NE18 718 aaKnown RBP3.6□□□□□ -1.83
USP53-205ENST00000509769 ZNF564Q8TBZ8 553 aaPredicted RBP3.6□□□□□ -1.83
USP53-205ENST00000509769 AENQ8WTP8 325 aaKnown RBP3.6□□□□□ -1.83
USP53-205ENST00000509769 UCMAQ8WVF2 138 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 NR4A3Q92570 626 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 SGK3Q96BR1 496 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 MTMR8Q96EF0 704 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 PGAP3Q96FM1 320 aaPredicted RBP3.6□□□□□ -1.83
USP53-205ENST00000509769 ZNF333Q96JL9 665 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 FAM84AQ96KN4 292 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 SNX27Q96L92 541 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 MYD88Q99836 296 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 GOLPH3Q9H4A6 298 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 PCDH12Q9NPG4 1184 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 SLAMF7Q9NQ25 335 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 LATS2Q9NRM7 1088 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 AFF4Q9UHB7 1163 aaKnown RBP3.6□□□□□ -1.83
USP53-205ENST00000509769 COG5Q9UP83 839 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 NEU2Q9Y3R4 380 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 MTF2Q9Y483 593 aaPredicted RBP3.6□□□□□ -1.83
USP53-205ENST00000509769 ALS2Q96Q42 1657 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 PHRF1Q9P1Y6 1649 aaKnown RBP3.6□□□□□ -1.83
USP53-205ENST00000509769 ATP6AP2A0A1C7CYW4 349 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 F8W031 263 aaPredicted RBP3.6□□□□□ -1.83
USP53-205ENST00000509769 CDC7O00311 574 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 SLC30A4O14863 429 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 RAD51CO43502 376 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 SORBS3O60504 671 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 PRAF2O60831 178 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 ATP6AP2O75787 350 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 GABBR2O75899 941 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 PRAMEF1O95521 474 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 ATP1A1P05023 1023 aaKnown RBP3.6□□□□□ -1.83
USP53-205ENST00000509769 NUDT17P0C025 328 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 TRAPPC2P0DI81 140 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 TRAPPC2BP0DI82 140 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 RORCP51449 518 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 DGKQP52824 942 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 TGM3Q08188 693 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 ZNF234Q14588 700 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 NEDD8Q15843 81 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 KCNA10Q16322 511 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 FAM187BQ17R55 369 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 SPDYE7PQ495Y7 208 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 CBWD6Q4V339 395 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 ARHGAP15Q53QZ3 475 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 RNASEH2BQ5TBB1 312 aaKnown RBP3.6□□□□□ -1.83
USP53-205ENST00000509769 DNM1P34Q6PK57 102 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 C11orf57Q6ZUT1 292 aaPredicted RBP3.6□□□□□ -1.83
USP53-205ENST00000509769 TRIM46Q7Z4K8 759 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 R3HCC1LQ7Z5L2 792 aaKnown RBP3.6□□□□□ -1.83
USP53-205ENST00000509769 SLC26A11Q86WA9 606 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 ZZZ3Q8IYH5 903 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 PQLC1Q8N2U9 271 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 OXR1Q8N573 874 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 ZNF548Q8NEK5 533 aaPredicted RBP3.6□□□□□ -1.83
USP53-205ENST00000509769 LPCAT1Q8NF37 534 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 THAP6Q8TBB0 222 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 ZNF431Q8TF32 576 aaPredicted RBP3.6□□□□□ -1.83
USP53-205ENST00000509769 KCNB2Q92953 911 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 NACC1Q96RE7 527 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 NPAS2Q99743 824 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 MGME1Q9BQP7 344 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 FUZQ9BT04 418 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 NLNQ9BYT8 704 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 AGXT2Q9BYV1 514 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 TRIM2Q9C040 744 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 ZYG11BQ9C0D3 744 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 KCNH6Q9H252 994 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 RSAD1Q9HA92 442 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 JPH1Q9HDC5 661 aaPredicted RBP3.6□□□□□ -1.83
USP53-205ENST00000509769 CASS4Q9NQ75 786 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 GCNT4Q9P109 453 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 CNOT11Q9UKZ1 510 aaKnown RBP3.6□□□□□ -1.83
USP53-205ENST00000509769 PSME2Q9UL46 239 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 PCDHB4Q9Y5E5 795 aa3.6□□□□□ -1.83
USP53-205ENST00000509769 ASTN2O75129 1339 aaPredicted RBP3.6□□□□□ -1.83
USP53-205ENST00000509769 E7ENX8 843 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 H0YIN7 160 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 GRM8O00222 908 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 SPTLC1O15269 473 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 SLC28A2O43868 658 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 PRKYO43930 277 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 AVILO75366 819 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 TADA2AO75478 443 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 CRTAMO95727 393 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 F10P00742 488 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 CKMP06732 381 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 PSAPP07602 524 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 COL9A1P20849 921 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 CES1P23141 567 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 PON1P27169 355 aa3.59□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms