RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 FAM153AQ9UHL3 310 aa29.86■■■□□ 2.37
LIMCH1-211ENST00000509638 INVSQ9Y283 1065 aa29.86■■■□□ 2.37
LIMCH1-211ENST00000509638 MYO15AQ9UKN7 3530 aa29.86■■■□□ 2.37
LIMCH1-211ENST00000509638 PGLSO95336 258 aa29.86■■■□□ 2.37
LIMCH1-211ENST00000509638 CPP00450 1065 aa29.86■■■□□ 2.37
LIMCH1-211ENST00000509638 C2orf54Q08AI8 447 aa29.86■■■□□ 2.37
LIMCH1-211ENST00000509638 ARMC12Q5T9G4 340 aa29.86■■■□□ 2.37
LIMCH1-211ENST00000509638 ZNF572Q7Z3I7 529 aaPredicted RBP29.86■■■□□ 2.37
LIMCH1-211ENST00000509638 PCDH9Q9HC56 1237 aa29.86■■■□□ 2.37
LIMCH1-211ENST00000509638 VPS45Q9NRW7 570 aa29.86■■■□□ 2.37
LIMCH1-211ENST00000509638 PAK5Q9P286 719 aa29.86■■■□□ 2.37
LIMCH1-211ENST00000509638 CHKBQ9Y259 395 aa29.86■■■□□ 2.37
LIMCH1-211ENST00000509638 DMDP11532 3685 aa29.85■■■□□ 2.37
LIMCH1-211ENST00000509638 IGHV1OR15-9A0A0B4J2B8 117 aa29.85■■■□□ 2.37
LIMCH1-211ENST00000509638 ECEL1O95672 775 aa29.85■■■□□ 2.37
LIMCH1-211ENST00000509638 GAS8O95995 478 aa29.85■■■□□ 2.37
LIMCH1-211ENST00000509638 PRPSAP1Q14558 356 aa29.85■■■□□ 2.37
LIMCH1-211ENST00000509638 HCAR2Q8TDS4 363 aa29.85■■■□□ 2.37
LIMCH1-211ENST00000509638 MLPHQ9BV36 600 aaPredicted RBP29.85■■■□□ 2.37
LIMCH1-211ENST00000509638 ZSCAN32Q9NX65 697 aa29.85■■■□□ 2.37
LIMCH1-211ENST00000509638 SPAG17Q6Q759 2223 aa29.84■■■□□ 2.37
LIMCH1-211ENST00000509638 ANXA9O76027 345 aa29.84■■■□□ 2.37
LIMCH1-211ENST00000509638 PDHA1P08559 390 aa29.84■■■□□ 2.37
LIMCH1-211ENST00000509638 RPL22P35268 128 aaKnown RBP29.84■■■□□ 2.37
LIMCH1-211ENST00000509638 ABL2P42684 1182 aa29.84■■■□□ 2.37
LIMCH1-211ENST00000509638 ADPRHP54922 357 aa29.84■■■□□ 2.37
LIMCH1-211ENST00000509638 TUBB2AQ13885 445 aa29.84■■■□□ 2.37
LIMCH1-211ENST00000509638 TRIP13Q15645 432 aaPredicted RBP29.84■■■□□ 2.37
LIMCH1-211ENST00000509638 PARP6Q2NL67 630 aa29.84■■■□□ 2.37
LIMCH1-211ENST00000509638 KDELC1Q6UW63 502 aa29.84■■■□□ 2.37
LIMCH1-211ENST00000509638 IPMKQ8NFU5 416 aa29.84■■■□□ 2.37
LIMCH1-211ENST00000509638 SPOCK2Q92563 424 aa29.84■■■□□ 2.37
LIMCH1-211ENST00000509638 PPP1R2P1Q96PQ5 205 aa29.84■■■□□ 2.37
LIMCH1-211ENST00000509638 TUBB2BQ9BVA1 445 aa29.84■■■□□ 2.37
LIMCH1-211ENST00000509638 PCYOX1Q9UHG3 505 aa29.84■■■□□ 2.37
LIMCH1-211ENST00000509638 UPK3BL1B0FP48 263 aa29.83■■■□□ 2.37
LIMCH1-211ENST00000509638 UPK3BL2E5RIL1 263 aa29.83■■■□□ 2.37
LIMCH1-211ENST00000509638 SLC7A4O43246 635 aa29.83■■■□□ 2.37
LIMCH1-211ENST00000509638 FZD6O60353 706 aa29.83■■■□□ 2.37
LIMCH1-211ENST00000509638 XPAP23025 273 aaPredicted RBP29.83■■■□□ 2.37
LIMCH1-211ENST00000509638 CD6P30203 668 aa29.83■■■□□ 2.37
LIMCH1-211ENST00000509638 OXTRP30559 389 aa29.83■■■□□ 2.37
LIMCH1-211ENST00000509638 ACSL1P33121 698 aa29.83■■■□□ 2.37
LIMCH1-211ENST00000509638 GEMP55040 296 aa29.83■■■□□ 2.37
LIMCH1-211ENST00000509638 WNT3AP56704 352 aa29.83■■■□□ 2.37
LIMCH1-211ENST00000509638 CCDC15Q0P6D6 951 aa29.83■■■□□ 2.37
LIMCH1-211ENST00000509638 MPP3Q13368 585 aa29.83■■■□□ 2.37
LIMCH1-211ENST00000509638 UGP2Q16851 508 aa29.83■■■□□ 2.37
LIMCH1-211ENST00000509638 KDELC2Q7Z4H8 507 aa29.83■■■□□ 2.37
LIMCH1-211ENST00000509638 TOE1Q96GM8 510 aaKnown RBP29.83■■■□□ 2.37
LIMCH1-211ENST00000509638 BTBD1Q9H0C5 482 aa29.83■■■□□ 2.37
LIMCH1-211ENST00000509638 FEZ2Q9UHY8 353 aaPredicted RBP29.83■■■□□ 2.37
LIMCH1-211ENST00000509638 CEP192Q8TEP8 1941 aa29.83■■■□□ 2.37
LIMCH1-211ENST00000509638 A0A1W2PQ67 120 aa29.82■■■□□ 2.36
LIMCH1-211ENST00000509638 KRT14P02533 472 aa29.82■■■□□ 2.36
LIMCH1-211ENST00000509638 VPS41P49754 854 aa29.82■■■□□ 2.36
LIMCH1-211ENST00000509638 SRSF5Q13243 272 aaKnown RBP29.82■■■□□ 2.36
LIMCH1-211ENST00000509638 TTC7BQ86TV6 843 aa29.82■■■□□ 2.36
LIMCH1-211ENST00000509638 PRSS33Q8NF86 280 aa29.82■■■□□ 2.36
LIMCH1-211ENST00000509638 OR14C36Q8NHC7 312 aa29.82■■■□□ 2.36
LIMCH1-211ENST00000509638 SLCO2A1Q92959 643 aa29.82■■■□□ 2.36
LIMCH1-211ENST00000509638 MRGPRX2Q96LB1 330 aa29.82■■■□□ 2.36
LIMCH1-211ENST00000509638 RUNDC3BQ96NL0 473 aa29.82■■■□□ 2.36
LIMCH1-211ENST00000509638 KRT12Q99456 494 aa29.82■■■□□ 2.36
LIMCH1-211ENST00000509638 PRRX2Q99811 253 aa29.82■■■□□ 2.36
LIMCH1-211ENST00000509638 FSD1LQ9BXM9 530 aa29.82■■■□□ 2.36
LIMCH1-211ENST00000509638 RAB6BQ9NRW1 208 aa29.82■■■□□ 2.36
LIMCH1-211ENST00000509638 ITM2BQ9Y287 266 aa29.82■■■□□ 2.36
LIMCH1-211ENST00000509638 AAR2Q9Y312 384 aaKnown RBP29.82■■■□□ 2.36
LIMCH1-211ENST00000509638 PCDHGA2Q9Y5H1 932 aa29.82■■■□□ 2.36
LIMCH1-211ENST00000509638 PLRG1O43660 514 aaKnown RBP29.81■■■□□ 2.36
LIMCH1-211ENST00000509638 RPP40O75818 363 aaKnown RBP29.81■■■□□ 2.36
LIMCH1-211ENST00000509638 PRKCGP05129 697 aa29.81■■■□□ 2.36
LIMCH1-211ENST00000509638 TIMP2P16035 220 aa29.81■■■□□ 2.36
LIMCH1-211ENST00000509638 TAS2R38P59533 333 aa29.81■■■□□ 2.36
LIMCH1-211ENST00000509638 ZBTB44Q8NCP5 570 aa29.81■■■□□ 2.36
LIMCH1-211ENST00000509638 LPCAT1Q8NF37 534 aa29.81■■■□□ 2.36
LIMCH1-211ENST00000509638 IFT43Q96FT9 208 aa29.81■■■□□ 2.36
LIMCH1-211ENST00000509638 TRIB3Q96RU7 358 aa29.81■■■□□ 2.36
LIMCH1-211ENST00000509638 SGK2Q9HBY8 427 aa29.81■■■□□ 2.36
LIMCH1-211ENST00000509638 WSB2Q9NYS7 404 aaPredicted RBP29.81■■■□□ 2.36
LIMCH1-211ENST00000509638 MBD1Q9UIS9 605 aaPredicted RBP29.81■■■□□ 2.36
LIMCH1-211ENST00000509638 NEU2Q9Y3R4 380 aa29.81■■■□□ 2.36
LIMCH1-211ENST00000509638 H0Y858 1186 aa29.81■■■□□ 2.36
LIMCH1-211ENST00000509638 SPINT1O43278 529 aa29.81■■■□□ 2.36
LIMCH1-211ENST00000509638 PRLP01236 227 aa29.81■■■□□ 2.36
LIMCH1-211ENST00000509638 POLR2LP62875 67 aaKnown RBP29.81■■■□□ 2.36
LIMCH1-211ENST00000509638 DR1Q01658 176 aa29.81■■■□□ 2.36
LIMCH1-211ENST00000509638 CDK18Q07002 472 aa29.81■■■□□ 2.36
LIMCH1-211ENST00000509638 GALNT3Q14435 633 aa29.81■■■□□ 2.36
LIMCH1-211ENST00000509638 PPP1R7Q15435 360 aa29.81■■■□□ 2.36
LIMCH1-211ENST00000509638 DNTTIP2Q5QJE6 756 aaKnown RBP29.81■■■□□ 2.36
LIMCH1-211ENST00000509638 GAB3Q8WWW8 586 aa29.81■■■□□ 2.36
LIMCH1-211ENST00000509638 RAB7BQ96AH8 199 aa29.81■■■□□ 2.36
LIMCH1-211ENST00000509638 FEM1CQ96JP0 617 aa29.81■■■□□ 2.36
LIMCH1-211ENST00000509638 PCDH12Q9NPG4 1184 aa29.81■■■□□ 2.36
LIMCH1-211ENST00000509638 ABCA7Q8IZY2 2146 aa29.8■■■□□ 2.36
LIMCH1-211ENST00000509638 GOLGA6CA6NDK9 693 aa29.8■■■□□ 2.36
LIMCH1-211ENST00000509638 GOLGA6BA6NDN3 693 aa29.8■■■□□ 2.36
LIMCH1-211ENST00000509638 SEMA4FO95754 770 aa29.8■■■□□ 2.36
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms