RNA–Protein interactions for RNA: ENST00000508319.1

HMGCS1-205, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 3

Gene HMGCS1, Length 591 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-205ENST00000508319 LRRC61Q9BV99 259 aa13.14□□□□□ -0.31
HMGCS1-205ENST00000508319 SUV39H2Q9H5I1 410 aa13.14□□□□□ -0.31
HMGCS1-205ENST00000508319 DHX35Q9H5Z1 703 aaKnown RBP13.14□□□□□ -0.31
HMGCS1-205ENST00000508319 HAUS4Q9H6D7 363 aa13.14□□□□□ -0.31
HMGCS1-205ENST00000508319 DONSONQ9NYP3 566 aa13.14□□□□□ -0.31
HMGCS1-205ENST00000508319 AIPL1Q9NZN9 384 aa13.14□□□□□ -0.31
HMGCS1-205ENST00000508319 APOBEC3BQ9UH17 382 aaKnown RBP13.14□□□□□ -0.31
HMGCS1-205ENST00000508319 PCSK1NQ9UHG2 260 aa13.14□□□□□ -0.31
HMGCS1-205ENST00000508319 COQ6Q9Y2Z9 468 aa13.14□□□□□ -0.31
HMGCS1-205ENST00000508319 A0A1B0GTH6 734 aa13.13□□□□□ -0.31
HMGCS1-205ENST00000508319 A0A1W2PQC6 194 aa13.13□□□□□ -0.31
HMGCS1-205ENST00000508319 EEF2KO00418 725 aaKnown RBP13.13□□□□□ -0.31
HMGCS1-205ENST00000508319 LZTS3O60299 673 aaPredicted RBP13.13□□□□□ -0.31
HMGCS1-205ENST00000508319 GCATO75600 419 aa13.13□□□□□ -0.31
HMGCS1-205ENST00000508319 GZMAP12544 262 aa13.13□□□□□ -0.31
HMGCS1-205ENST00000508319 C6P13671 934 aa13.13□□□□□ -0.31
HMGCS1-205ENST00000508319 MMP12P39900 470 aa13.13□□□□□ -0.31
HMGCS1-205ENST00000508319 PRKCIP41743 596 aa13.13□□□□□ -0.31
HMGCS1-205ENST00000508319 DUSP3P51452 185 aaPredicted RBP13.13□□□□□ -0.31
HMGCS1-205ENST00000508319 SUOXP51687 545 aa13.13□□□□□ -0.31
HMGCS1-205ENST00000508319 THOP1P52888 689 aa13.13□□□□□ -0.31
HMGCS1-205ENST00000508319 YPEL5P62699 121 aa13.13□□□□□ -0.31
HMGCS1-205ENST00000508319 ELP6Q0PNE2 266 aa13.13□□□□□ -0.31
HMGCS1-205ENST00000508319 COL9A2Q14055 689 aaPredicted RBP13.13□□□□□ -0.31
HMGCS1-205ENST00000508319 PTK2BQ14289 1009 aa13.13□□□□□ -0.31
HMGCS1-205ENST00000508319 GRM3Q14832 879 aa13.13□□□□□ -0.31
HMGCS1-205ENST00000508319 ASIC2Q16515 512 aa13.13□□□□□ -0.31
HMGCS1-205ENST00000508319 UGP2Q16851 508 aa13.13□□□□□ -0.31
HMGCS1-205ENST00000508319 DEFB133Q30KQ1 61 aa13.13□□□□□ -0.31
HMGCS1-205ENST00000508319 TMEM52BQ4KMG9 183 aa13.13□□□□□ -0.31
HMGCS1-205ENST00000508319 SOWAHCQ53LP3 525 aaPredicted RBP13.13□□□□□ -0.31
HMGCS1-205ENST00000508319 PRRT3Q5FWE3 981 aa13.13□□□□□ -0.31
HMGCS1-205ENST00000508319 GUSBP11Q6P575 273 aa13.13□□□□□ -0.31
HMGCS1-205ENST00000508319 RFX8Q6ZV50 586 aa13.13□□□□□ -0.31
HMGCS1-205ENST00000508319 ZSWIM9Q86XI8 627 aa13.13□□□□□ -0.31
HMGCS1-205ENST00000508319 PHACTR4Q8IZ21 702 aa13.13□□□□□ -0.31
HMGCS1-205ENST00000508319 HCAR2Q8TDS4 363 aa13.13□□□□□ -0.31
HMGCS1-205ENST00000508319 TBATAQ96M53 351 aa13.13□□□□□ -0.31
HMGCS1-205ENST00000508319 BBC3Q96PG8 261 aaPredicted RBP13.13□□□□□ -0.31
HMGCS1-205ENST00000508319 DEPDC7Q96QD5 511 aa13.13□□□□□ -0.31
HMGCS1-205ENST00000508319 BOCQ9BWV1 1114 aa13.13□□□□□ -0.31
HMGCS1-205ENST00000508319 C1QTNF7Q9BXJ2 289 aa13.13□□□□□ -0.31
HMGCS1-205ENST00000508319 SLC39A8Q9C0K1 460 aa13.13□□□□□ -0.31
HMGCS1-205ENST00000508319 PCDH12Q9NPG4 1184 aa13.13□□□□□ -0.31
HMGCS1-205ENST00000508319 NCKIPSDQ9NZQ3 722 aa13.13□□□□□ -0.31
HMGCS1-205ENST00000508319 GCN1Q92616 2671 aaKnown RBP13.13□□□□□ -0.31
HMGCS1-205ENST00000508319 ARHGAP42A6NI28 874 aa13.12□□□□□ -0.31
HMGCS1-205ENST00000508319 DDX3XO00571 662 aaKnown RBP eCLIP13.12□□□□□ -0.31
HMGCS1-205ENST00000508319 TOR1BO14657 336 aa13.12□□□□□ -0.31
HMGCS1-205ENST00000508319 TPP1O14773 563 aa13.12□□□□□ -0.31
HMGCS1-205ENST00000508319 BUB1BO60566 1050 aaPredicted RBP13.12□□□□□ -0.31
HMGCS1-205ENST00000508319 LRCH4O75427 683 aa13.12□□□□□ -0.31
HMGCS1-205ENST00000508319 FTLP02792 175 aaPredicted RBP13.12□□□□□ -0.31
HMGCS1-205ENST00000508319 TGM2P21980 687 aa13.12□□□□□ -0.31
HMGCS1-205ENST00000508319 MIPP30301 263 aa13.12□□□□□ -0.31
HMGCS1-205ENST00000508319 EIF4A3P38919 411 aaKnown RBP13.12□□□□□ -0.31
HMGCS1-205ENST00000508319 PAPOLAP51003 745 aaKnown RBP13.12□□□□□ -0.31
HMGCS1-205ENST00000508319 DPYSQ14117 519 aa13.12□□□□□ -0.31
HMGCS1-205ENST00000508319 LRRC14Q15048 493 aa13.12□□□□□ -0.31
HMGCS1-205ENST00000508319 CDKN3Q16667 212 aa13.12□□□□□ -0.31
HMGCS1-205ENST00000508319 WSCD2Q2TBF2 565 aa13.12□□□□□ -0.31
HMGCS1-205ENST00000508319 TBC1D25Q3MII6 688 aa13.12□□□□□ -0.31
HMGCS1-205ENST00000508319 BRAT1Q6PJG6 821 aa13.12□□□□□ -0.31
HMGCS1-205ENST00000508319 ARHGAP36Q6ZRI8 547 aa13.12□□□□□ -0.31
HMGCS1-205ENST00000508319 CAMK1DQ8IU85 385 aa13.12□□□□□ -0.31
HMGCS1-205ENST00000508319 TSEN2Q8NCE0 465 aaKnown RBP13.12□□□□□ -0.31
HMGCS1-205ENST00000508319 BTN2A2Q8WVV5 523 aa13.12□□□□□ -0.31
HMGCS1-205ENST00000508319 ZNF641Q96N77 438 aaPredicted RBP13.12□□□□□ -0.31
HMGCS1-205ENST00000508319 NAP1L5Q96NT1 182 aaPredicted RBP13.12□□□□□ -0.31
HMGCS1-205ENST00000508319 TUBGCP5Q96RT8 1024 aa13.12□□□□□ -0.31
HMGCS1-205ENST00000508319 EVA1BQ9NVM1 165 aa13.12□□□□□ -0.31
HMGCS1-205ENST00000508319 SPASTQ9UBP0 616 aa13.12□□□□□ -0.31
HMGCS1-205ENST00000508319 CNOT8Q9UFF9 292 aaKnown RBP13.12□□□□□ -0.31
HMGCS1-205ENST00000508319 SALL4Q9UJQ4 1053 aa13.12□□□□□ -0.31
HMGCS1-205ENST00000508319 CFAP46Q8IYW2 2715 aa13.12□□□□□ -0.31
HMGCS1-205ENST00000508319 KIF26BQ2KJY2 2108 aa13.12□□□□□ -0.31
HMGCS1-205ENST00000508319 ATMQ13315 3056 aa13.11□□□□□ -0.31
HMGCS1-205ENST00000508319 EME2A4GXA9 379 aaPredicted RBP13.11□□□□□ -0.31
HMGCS1-205ENST00000508319 SMTNL1A8MU46 457 aa13.11□□□□□ -0.31
HMGCS1-205ENST00000508319 LMO7DNF2Z398 122 aa13.11□□□□□ -0.31
HMGCS1-205ENST00000508319 RIOK3O14730 519 aaKnown RBP13.11□□□□□ -0.31
HMGCS1-205ENST00000508319 MUSKO15146 869 aa13.11□□□□□ -0.31
HMGCS1-205ENST00000508319 PRPSAP2O60256 369 aa13.11□□□□□ -0.31
HMGCS1-205ENST00000508319 CSO75390 466 aaKnown RBP13.11□□□□□ -0.31
HMGCS1-205ENST00000508319 MPOP05164 745 aa13.11□□□□□ -0.31
HMGCS1-205ENST00000508319 CELA2BP08218 269 aaPredicted RBP13.11□□□□□ -0.31
HMGCS1-205ENST00000508319 TSHRP16473 764 aa13.11□□□□□ -0.31
HMGCS1-205ENST00000508319 ERCC2P18074 760 aa13.11□□□□□ -0.31
HMGCS1-205ENST00000508319 XPAP23025 273 aaPredicted RBP13.11□□□□□ -0.31
HMGCS1-205ENST00000508319 ACTN2P35609 894 aa13.11□□□□□ -0.31
HMGCS1-205ENST00000508319 CSNK1DP48730 415 aa13.11□□□□□ -0.31
HMGCS1-205ENST00000508319 ZNF165P49910 485 aa13.11□□□□□ -0.31
HMGCS1-205ENST00000508319 C1orf61Q13536 156 aa13.11□□□□□ -0.31
HMGCS1-205ENST00000508319 AGERQ15109 404 aa13.11□□□□□ -0.31
HMGCS1-205ENST00000508319 FILIP1LQ4L180 1135 aa13.11□□□□□ -0.31
HMGCS1-205ENST00000508319 PPP6R3Q5H9R7 873 aaPredicted RBP13.11□□□□□ -0.31
HMGCS1-205ENST00000508319 C6orf132Q5T0Z8 1188 aa13.11□□□□□ -0.31
HMGCS1-205ENST00000508319 CFAP58Q5T655 872 aa13.11□□□□□ -0.31
HMGCS1-205ENST00000508319 CAVIN1Q6NZI2 390 aaKnown RBP13.11□□□□□ -0.31
HMGCS1-205ENST00000508319 EFL1Q7Z2Z2 1120 aaKnown RBP13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms