RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 PTPN3P26045 913 aa10.15□□□□□ -0.78
NUP54-203ENST00000504173 CHRNA3P32297 505 aa10.15□□□□□ -0.78
NUP54-203ENST00000504173 RGRP47804 291 aa10.15□□□□□ -0.78
NUP54-203ENST00000504173 PSMD8P48556 350 aa10.15□□□□□ -0.78
NUP54-203ENST00000504173 SCNN1BP51168 640 aa10.15□□□□□ -0.78
NUP54-203ENST00000504173 COPAP53621 1224 aa10.15□□□□□ -0.78
NUP54-203ENST00000504173 SNX1Q13596 522 aa10.15□□□□□ -0.78
NUP54-203ENST00000504173 BYSLQ13895 437 aaKnown RBP10.15□□□□□ -0.78
NUP54-203ENST00000504173 CCNG2Q16589 344 aa10.15□□□□□ -0.78
NUP54-203ENST00000504173 MYLK3Q32MK0 819 aa10.15□□□□□ -0.78
NUP54-203ENST00000504173 SRLQ86TD4 932 aa10.15□□□□□ -0.78
NUP54-203ENST00000504173 KBTBD6Q86V97 674 aa10.15□□□□□ -0.78
NUP54-203ENST00000504173 TMPRSS6Q8IU80 811 aa10.15□□□□□ -0.78
NUP54-203ENST00000504173 MMAAQ8IVH4 418 aaKnown RBP10.15□□□□□ -0.78
NUP54-203ENST00000504173 PGBD5Q8N414 524 aa10.15□□□□□ -0.78
NUP54-203ENST00000504173 LSM14AQ8ND56 463 aaKnown RBP10.15□□□□□ -0.78
NUP54-203ENST00000504173 GRIN3AQ8TCU5 1115 aa10.15□□□□□ -0.78
NUP54-203ENST00000504173 HNRNPLLQ8WVV9 542 aaKnown RBP10.15□□□□□ -0.78
NUP54-203ENST00000504173 SLC39A7Q92504 469 aa10.15□□□□□ -0.78
NUP54-203ENST00000504173 PRCCQ92733 491 aaPredicted RBP10.15□□□□□ -0.78
NUP54-203ENST00000504173 SIPA1Q96FS4 1042 aa10.15□□□□□ -0.78
NUP54-203ENST00000504173 ZNF419Q96HQ0 510 aaPredicted RBP10.15□□□□□ -0.78
NUP54-203ENST00000504173 MRGPRX1Q96LB2 322 aa10.15□□□□□ -0.78
NUP54-203ENST00000504173 AGAP3Q96P47 875 aa10.15□□□□□ -0.78
NUP54-203ENST00000504173 AP1M1Q9BXS5 423 aa10.15□□□□□ -0.78
NUP54-203ENST00000504173 POLR1EQ9GZS1 481 aaKnown RBP10.15□□□□□ -0.78
NUP54-203ENST00000504173 MKRN2Q9H000 416 aaKnown RBP10.15□□□□□ -0.78
NUP54-203ENST00000504173 SLC6A17Q9H1V8 727 aa10.15□□□□□ -0.78
NUP54-203ENST00000504173 RSPH9Q9H1X1 276 aaPredicted RBP10.15□□□□□ -0.78
NUP54-203ENST00000504173 HOMER3Q9NSC5 361 aa10.15□□□□□ -0.78
NUP54-203ENST00000504173 KLHL8Q9P2G9 620 aaPredicted RBP10.15□□□□□ -0.78
NUP54-203ENST00000504173 AMACRQ9UHK6 382 aa10.15□□□□□ -0.78
NUP54-203ENST00000504173 ZNF148Q9UQR1 794 aa10.15□□□□□ -0.78
NUP54-203ENST00000504173 CACNA1EQ15878 2313 aa10.15□□□□□ -0.79
NUP54-203ENST00000504173 LNP1A1A4G5 178 aa10.14□□□□□ -0.79
NUP54-203ENST00000504173 CFAP69A5D8W1 941 aa10.14□□□□□ -0.79
NUP54-203ENST00000504173 ATXN7O15265 892 aaPredicted RBP10.14□□□□□ -0.79
NUP54-203ENST00000504173 INSIG1O15503 277 aa10.14□□□□□ -0.79
NUP54-203ENST00000504173 GJB3O75712 270 aa10.14□□□□□ -0.79
NUP54-203ENST00000504173 RPP40O75818 363 aaKnown RBP10.14□□□□□ -0.79
NUP54-203ENST00000504173 DNTTP04053 509 aa10.14□□□□□ -0.79
NUP54-203ENST00000504173 CTSLP07711 333 aa10.14□□□□□ -0.79
NUP54-203ENST00000504173 ACADMP11310 421 aa10.14□□□□□ -0.79
NUP54-203ENST00000504173 GKP32189 559 aa10.14□□□□□ -0.79
NUP54-203ENST00000504173 PAFAH1B1P43034 410 aa10.14□□□□□ -0.79
NUP54-203ENST00000504173 MAPK8P45983 427 aa10.14□□□□□ -0.79
NUP54-203ENST00000504173 CSNK1DP48730 415 aa10.14□□□□□ -0.79
NUP54-203ENST00000504173 PXNP49023 591 aaPredicted RBP10.14□□□□□ -0.79
NUP54-203ENST00000504173 AP1S1P61966 158 aa10.14□□□□□ -0.79
NUP54-203ENST00000504173 RPS14P62263 151 aaKnown RBP10.14□□□□□ -0.79
NUP54-203ENST00000504173 DSC2Q02487 901 aa10.14□□□□□ -0.79
NUP54-203ENST00000504173 SRSF1Q07955 248 aaKnown RBP eCLIP10.14□□□□□ -0.797e-7■□□□□ 8.2
NUP54-203ENST00000504173 NSUN2Q08J23 767 aaKnown RBP eCLIP10.14□□□□□ -0.79
NUP54-203ENST00000504173 WASHC5Q12768 1159 aa10.14□□□□□ -0.79
NUP54-203ENST00000504173 GRM3Q14832 879 aa10.14□□□□□ -0.79
NUP54-203ENST00000504173 OASLQ15646 514 aaKnown RBP10.14□□□□□ -0.79
NUP54-203ENST00000504173 CST6Q15828 149 aa10.14□□□□□ -0.79
NUP54-203ENST00000504173 POM121L1PQ3SYA9 428 aa10.14□□□□□ -0.79
NUP54-203ENST00000504173 TTC31Q49AM3 519 aaPredicted RBP10.14□□□□□ -0.79
NUP54-203ENST00000504173 TEX44Q53QW1 395 aa10.14□□□□□ -0.79
NUP54-203ENST00000504173 ARSIQ5FYB1 569 aa10.14□□□□□ -0.79
NUP54-203ENST00000504173 FAM182AQ5T1J6 154 aa10.14□□□□□ -0.79
NUP54-203ENST00000504173 FAM46CQ5VWP2 391 aa10.14□□□□□ -0.79
NUP54-203ENST00000504173 PID1Q7Z2X4 250 aa10.14□□□□□ -0.79
NUP54-203ENST00000504173 CREG2Q8IUH2 290 aa10.14□□□□□ -0.79
NUP54-203ENST00000504173 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP10.14□□□□□ -0.79
NUP54-203ENST00000504173 PAF1Q8N7H5 531 aa10.14□□□□□ -0.79
NUP54-203ENST00000504173 CNTD1Q8N815 330 aa10.14□□□□□ -0.79
NUP54-203ENST00000504173 PRELID2Q8N945 189 aa10.14□□□□□ -0.79
NUP54-203ENST00000504173 FAM71DQ8N9W8 422 aa10.14□□□□□ -0.79
NUP54-203ENST00000504173 MDGA1Q8NFP4 955 aa10.14□□□□□ -0.79
NUP54-203ENST00000504173 PIP4K2CQ8TBX8 421 aa10.14□□□□□ -0.79
NUP54-203ENST00000504173 GANCQ8TET4 914 aa10.14□□□□□ -0.79
NUP54-203ENST00000504173 MAGOHBQ96A72 148 aaKnown RBP10.14□□□□□ -0.79
NUP54-203ENST00000504173 NUDCD1Q96RS6 583 aa10.14□□□□□ -0.79
NUP54-203ENST00000504173 FAM129BQ96TA1 746 aa10.14□□□□□ -0.79
NUP54-203ENST00000504173 VAT1Q99536 393 aa10.14□□□□□ -0.79
NUP54-203ENST00000504173 SEMA3CQ99985 751 aa10.14□□□□□ -0.79
NUP54-203ENST00000504173 TMEM121Q9BTD3 319 aa10.14□□□□□ -0.79
NUP54-203ENST00000504173 OSBPL1AQ9BXW6 950 aa10.14□□□□□ -0.79
NUP54-203ENST00000504173 TPSD1Q9BZJ3 242 aa10.14□□□□□ -0.79
NUP54-203ENST00000504173 DYRK4Q9NR20 520 aa10.14□□□□□ -0.79
NUP54-203ENST00000504173 RNF14Q9UBS8 474 aa10.14□□□□□ -0.79
NUP54-203ENST00000504173 ATP8A1Q9Y2Q0 1164 aa10.14□□□□□ -0.79
NUP54-203ENST00000504173 WASF2Q9Y6W5 498 aa10.14□□□□□ -0.79
NUP54-203ENST00000504173 TTC24A2A3L6 582 aaPredicted RBP10.13□□□□□ -0.79
NUP54-203ENST00000504173 KPNA3O00505 521 aaPredicted RBP10.13□□□□□ -0.79
NUP54-203ENST00000504173 CDX4O14627 284 aaPredicted RBP10.13□□□□□ -0.79
NUP54-203ENST00000504173 MID1O15344 667 aa10.13□□□□□ -0.79
NUP54-203ENST00000504173 OPHN1O60890 802 aa10.13□□□□□ -0.79
NUP54-203ENST00000504173 PHF2O75151 1096 aa10.13□□□□□ -0.79
NUP54-203ENST00000504173 LEFTY1O75610 366 aa10.13□□□□□ -0.79
NUP54-203ENST00000504173 URI1O94763 535 aaPredicted RBP10.13□□□□□ -0.79
NUP54-203ENST00000504173 PIGNO95427 931 aa10.13□□□□□ -0.79
NUP54-203ENST00000504173 ADH1BP00325 375 aa10.13□□□□□ -0.79
NUP54-203ENST00000504173 UGT2B4P06133 528 aa10.13□□□□□ -0.79
NUP54-203ENST00000504173 ITGAVP06756 1048 aa10.13□□□□□ -0.79
NUP54-203ENST00000504173 CR2P20023 1033 aa10.13□□□□□ -0.79
NUP54-203ENST00000504173 C5AR1P21730 350 aa10.13□□□□□ -0.79
NUP54-203ENST00000504173 SERPINA4P29622 427 aa10.13□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 69.6 ms