RNA–Protein interactions for RNA: ENST00000495528.1

VIM-207, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 962 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-207ENST00000495528 KIFC3Q9BVG8 833 aa6.89□□□□□ -1.31
VIM-207ENST00000495528 TRMT61BQ9BVS5 477 aaKnown RBP6.89□□□□□ -1.31
VIM-207ENST00000495528 KRTAP9-3Q9BYQ3 159 aa6.89□□□□□ -1.31
VIM-207ENST00000495528 C2orf40Q9H1Z8 148 aa6.89□□□□□ -1.31
VIM-207ENST00000495528 BHMT2Q9H2M3 363 aa6.89□□□□□ -1.31
VIM-207ENST00000495528 LMAN1LQ9HAT1 526 aa6.89□□□□□ -1.31
VIM-207ENST00000495528 ZFP14Q9HCL3 533 aa6.89□□□□□ -1.31
VIM-207ENST00000495528 GALNT9Q9HCQ5 603 aa6.89□□□□□ -1.31
VIM-207ENST00000495528 TESQ9UGI8 421 aaKnown RBP6.89□□□□□ -1.31
VIM-207ENST00000495528 RCOR1Q9UKL0 485 aa6.89□□□□□ -1.31
VIM-207ENST00000495528 MRPS17Q9Y2R5 130 aaKnown RBP6.89□□□□□ -1.31
VIM-207ENST00000495528 PCDHGB6Q9Y5F9 930 aa6.89□□□□□ -1.31
VIM-207ENST00000495528 FANCMQ8IYD8 2048 aa6.89□□□□□ -1.31
VIM-207ENST00000495528 TPRP12270 2363 aaKnown RBP6.89□□□□□ -1.31
VIM-207ENST00000495528 SPTBN2O15020 2390 aa6.88□□□□□ -1.31
VIM-207ENST00000495528 CACNA1BQ00975 2339 aa6.88□□□□□ -1.31
VIM-207ENST00000495528 NOTCH4Q99466 2003 aa6.88□□□□□ -1.31
VIM-207ENST00000495528 TDRD15B5MCY1 1934 aaKnown RBP6.88□□□□□ -1.31
VIM-207ENST00000495528 SMIM28A0A1B0GU29 152 aa6.88□□□□□ -1.31
VIM-207ENST00000495528 TRAPPC3O43617 180 aa6.88□□□□□ -1.31
VIM-207ENST00000495528 MOSPD3O75425 235 aa6.88□□□□□ -1.31
VIM-207ENST00000495528 SUN1O94901 812 aa6.88□□□□□ -1.31
VIM-207ENST00000495528 ZBED1O96006 694 aa6.88□□□□□ -1.31
VIM-207ENST00000495528 CHEK2O96017 543 aa6.88□□□□□ -1.31
VIM-207ENST00000495528 FSHBP01225 129 aa6.88□□□□□ -1.31
VIM-207ENST00000495528 ADH4P08319 380 aa6.88□□□□□ -1.31
VIM-207ENST00000495528 ITGAMP11215 1152 aa6.88□□□□□ -1.31
VIM-207ENST00000495528 MARCKSP29966 332 aaPredicted RBP6.88□□□□□ -1.31
VIM-207ENST00000495528 ELF1P32519 619 aa6.88□□□□□ -1.31
VIM-207ENST00000495528 NAMPTP43490 491 aa6.88□□□□□ -1.31
VIM-207ENST00000495528 TRAPPC10P48553 1259 aa6.88□□□□□ -1.31
VIM-207ENST00000495528 ABHD18Q0P651 414 aa6.88□□□□□ -1.31
VIM-207ENST00000495528 SLC39A14Q15043 492 aa6.88□□□□□ -1.31
VIM-207ENST00000495528 STK38Q15208 465 aa6.88□□□□□ -1.31
VIM-207ENST00000495528 PTPAQ15257 358 aa6.88□□□□□ -1.31
VIM-207ENST00000495528 DCAF4L1Q3SXM0 396 aa6.88□□□□□ -1.31
VIM-207ENST00000495528 ATF7IP2Q5U623 682 aa6.88□□□□□ -1.31
VIM-207ENST00000495528 EMC10Q5UCC4 262 aa6.88□□□□□ -1.31
VIM-207ENST00000495528 ATL3Q6DD88 541 aa6.88□□□□□ -1.31
VIM-207ENST00000495528 SLC8B1Q6J4K2 584 aa6.88□□□□□ -1.31
VIM-207ENST00000495528 DARS2Q6PI48 645 aaKnown RBP6.88□□□□□ -1.31
VIM-207ENST00000495528 ALKAL1Q6UXT8 129 aa6.88□□□□□ -1.31
VIM-207ENST00000495528 CLNKQ7Z7G1 428 aa6.88□□□□□ -1.31
VIM-207ENST00000495528 C4orf32Q8N8J7 132 aa6.88□□□□□ -1.31
VIM-207ENST00000495528 FAM3CQ92520 227 aa6.88□□□□□ -1.31
VIM-207ENST00000495528 DNASE1L2Q92874 299 aa6.88□□□□□ -1.31
VIM-207ENST00000495528 BOD1Q96IK1 185 aa6.88□□□□□ -1.31
VIM-207ENST00000495528 UROC1Q96N76 676 aa6.88□□□□□ -1.31
VIM-207ENST00000495528 ZMAT2Q96NC0 199 aaKnown RBP6.88□□□□□ -1.31
VIM-207ENST00000495528 POLR3CQ9BUI4 534 aaPredicted RBP6.88□□□□□ -1.31
VIM-207ENST00000495528 SIK2Q9H0K1 926 aa6.88□□□□□ -1.31
VIM-207ENST00000495528 CYP4F11Q9HBI6 524 aa6.88□□□□□ -1.31
VIM-207ENST00000495528 ZNF334Q9HCZ1 680 aaPredicted RBP6.88□□□□□ -1.31
VIM-207ENST00000495528 TUFT1Q9NNX1 390 aa6.88□□□□□ -1.31
VIM-207ENST00000495528 DKK2Q9UBU2 259 aa6.88□□□□□ -1.31
VIM-207ENST00000495528 FBXL5Q9UKA1 691 aa6.88□□□□□ -1.31
VIM-207ENST00000495528 GMEB2Q9UKD1 530 aa6.88□□□□□ -1.31
VIM-207ENST00000495528 DYNC1LI1Q9Y6G9 523 aaKnown RBP6.88□□□□□ -1.31
VIM-207ENST00000495528 WDR87Q6ZQQ6 2873 aa6.88□□□□□ -1.31
VIM-207ENST00000495528 ARHGEF35A5YM69 484 aa6.87□□□□□ -1.31
VIM-207ENST00000495528 PODXLO00592 558 aa6.87□□□□□ -1.31
VIM-207ENST00000495528 PRRG1O14668 218 aa6.87□□□□□ -1.31
VIM-207ENST00000495528 ZNF197O14709 1029 aa6.87□□□□□ -1.31
VIM-207ENST00000495528 SPTLC2O15270 562 aa6.87□□□□□ -1.31
VIM-207ENST00000495528 FZD7O75084 574 aa6.87□□□□□ -1.31
VIM-207ENST00000495528 DNAJB5O75953 348 aa6.87□□□□□ -1.31
VIM-207ENST00000495528 GRPP07492 148 aa6.87□□□□□ -1.31
VIM-207ENST00000495528 CHRNB1P11230 501 aa6.87□□□□□ -1.31
VIM-207ENST00000495528 GJA1P17302 382 aa6.87□□□□□ -1.31
VIM-207ENST00000495528 PSMC3P17980 439 aa6.87□□□□□ -1.31
VIM-207ENST00000495528 RHCEP18577 417 aa6.87□□□□□ -1.31
VIM-207ENST00000495528 CCNE1P24864 410 aa6.87□□□□□ -1.31
VIM-207ENST00000495528 RPA1P27694 616 aa6.87□□□□□ -1.31
VIM-207ENST00000495528 GDI1P31150 447 aa6.87□□□□□ -1.31
VIM-207ENST00000495528 VIPR2P41587 438 aa6.87□□□□□ -1.31
VIM-207ENST00000495528 ME1P48163 572 aa6.87□□□□□ -1.31
VIM-207ENST00000495528 OSTNP61366 133 aa6.87□□□□□ -1.31
VIM-207ENST00000495528 POU6F2P78424 691 aaPredicted RBP6.87□□□□□ -1.31
VIM-207ENST00000495528 SATB1Q01826 763 aa6.87□□□□□ -1.31
VIM-207ENST00000495528 RHDQ02161 417 aa6.87□□□□□ -1.31
VIM-207ENST00000495528 DMWDQ09019 674 aa6.87□□□□□ -1.31
VIM-207ENST00000495528 XKR4Q5GH76 650 aa6.87□□□□□ -1.31
VIM-207ENST00000495528 CYP4A22Q5TCH4 519 aa6.87□□□□□ -1.31
VIM-207ENST00000495528 VITQ6UXI7 678 aa6.87□□□□□ -1.31
VIM-207ENST00000495528 CLEC17AQ6ZS10 378 aa6.87□□□□□ -1.31
VIM-207ENST00000495528 VRK3Q8IV63 474 aa6.87□□□□□ -1.31
VIM-207ENST00000495528 ARHGEF19Q8IW93 802 aa6.87□□□□□ -1.31
VIM-207ENST00000495528 LINC00301Q8NCQ3 95 aa6.87□□□□□ -1.31
VIM-207ENST00000495528 PSD4Q8NDX1 1056 aa6.87□□□□□ -1.31
VIM-207ENST00000495528 ASB10Q8WXI3 467 aa6.87□□□□□ -1.31
VIM-207ENST00000495528 LRTOMTQ8WZ04 291 aa6.87□□□□□ -1.31
VIM-207ENST00000495528 TTYH3Q9C0H2 523 aa6.87□□□□□ -1.31
VIM-207ENST00000495528 SCAND2PQ9GZW5 306 aaPredicted RBP6.87□□□□□ -1.31
VIM-207ENST00000495528 SERHL2Q9H4I8 314 aa6.87□□□□□ -1.31
VIM-207ENST00000495528 UNKLQ9H9P5 680 aaKnown RBP6.87□□□□□ -1.31
VIM-207ENST00000495528 PTPRHQ9HD43 1115 aa6.87□□□□□ -1.31
VIM-207ENST00000495528 ETAA1Q9NY74 926 aa6.87□□□□□ -1.31
VIM-207ENST00000495528 TNFSF13BQ9Y275 285 aa6.87□□□□□ -1.31
VIM-207ENST00000495528 INSL5Q9Y5Q6 135 aa6.87□□□□□ -1.31
VIM-207ENST00000495528 HS3ST4Q9Y661 456 aa6.87□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms