RNA–Protein interactions for RNA: ENST00000494623.1

CHMP3-209, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2

Gene CHMP3, Length 2,724 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-209ENST00000494623 NYNRINQ9P2P1 1898 aaKnown RBP11.29□□□□□ -0.6
CHMP3-209ENST00000494623 CA12O43570 354 aa11.29□□□□□ -0.6
CHMP3-209ENST00000494623 GJB3O75712 270 aa11.29□□□□□ -0.6
CHMP3-209ENST00000494623 MMP2P08253 660 aa11.29□□□□□ -0.6
CHMP3-209ENST00000494623 CKBP12277 381 aa11.29□□□□□ -0.6
CHMP3-209ENST00000494623 KCNA5P22460 613 aa11.29□□□□□ -0.6
CHMP3-209ENST00000494623 ATP5F1P24539 256 aaPredicted RBP11.29□□□□□ -0.6
CHMP3-209ENST00000494623 PPARGP37231 505 aaPredicted RBP11.29□□□□□ -0.6
CHMP3-209ENST00000494623 HK2P52789 917 aa11.29□□□□□ -0.6
CHMP3-209ENST00000494623 FAM26DQ5JW98 314 aa11.29□□□□□ -0.6
CHMP3-209ENST00000494623 C10orf120Q5SQS8 335 aa11.29□□□□□ -0.6
CHMP3-209ENST00000494623 SDCCAG8Q86SQ7 713 aaPredicted RBP11.29□□□□□ -0.6
CHMP3-209ENST00000494623 ZNF683Q8IZ20 524 aa11.29□□□□□ -0.6
CHMP3-209ENST00000494623 ATP6V0D2Q8N8Y2 350 aa11.29□□□□□ -0.6
CHMP3-209ENST00000494623 FBXO32Q969P5 355 aa11.29□□□□□ -0.6
CHMP3-209ENST00000494623 HDAC10Q969S8 669 aa11.29□□□□□ -0.6
CHMP3-209ENST00000494623 PHF21BQ96EK2 531 aa11.29□□□□□ -0.6
CHMP3-209ENST00000494623 C8orf48Q96LL4 319 aa11.29□□□□□ -0.6
CHMP3-209ENST00000494623 VCXQ9H320 206 aa11.29□□□□□ -0.6
CHMP3-209ENST00000494623 ARNT2Q9HBZ2 717 aa11.29□□□□□ -0.6
CHMP3-209ENST00000494623 TMEM248Q9NWD8 314 aa11.29□□□□□ -0.6
CHMP3-209ENST00000494623 CLIC5Q9NZA1 410 aa11.29□□□□□ -0.6
CHMP3-209ENST00000494623 UXTQ9UBK9 157 aaPredicted RBP11.29□□□□□ -0.6
CHMP3-209ENST00000494623 SCOCQ9UIL1 159 aa11.29□□□□□ -0.6
CHMP3-209ENST00000494623 NLRC5Q86WI3 1866 aa11.29□□□□□ -0.6
CHMP3-209ENST00000494623 COL4A4P53420 1690 aaPredicted RBP11.29□□□□□ -0.6
CHMP3-209ENST00000494623 SLC12A8A0AV02 714 aa11.29□□□□□ -0.6
CHMP3-209ENST00000494623 OR51F1A6NGY5 319 aa11.29□□□□□ -0.6
CHMP3-209ENST00000494623 EOMESO95936 686 aa11.29□□□□□ -0.6
CHMP3-209ENST00000494623 ENO3P13929 434 aaPredicted RBP11.29□□□□□ -0.6
CHMP3-209ENST00000494623 RAG1P15918 1043 aa11.29□□□□□ -0.6
CHMP3-209ENST00000494623 YWHAQP27348 245 aa11.29□□□□□ -0.6
CHMP3-209ENST00000494623 NKX3-2P78367 333 aa11.29□□□□□ -0.6
CHMP3-209ENST00000494623 DSC1Q08554 894 aa11.29□□□□□ -0.6
CHMP3-209ENST00000494623 NSUN2Q08J23 767 aaKnown RBP eCLIP11.29□□□□□ -0.6
CHMP3-209ENST00000494623 SREBF2Q12772 1141 aa11.29□□□□□ -0.6
CHMP3-209ENST00000494623 CDC16Q13042 620 aa11.29□□□□□ -0.6
CHMP3-209ENST00000494623 POLD3Q15054 466 aaPredicted RBP11.29□□□□□ -0.6
CHMP3-209ENST00000494623 HECTD2Q5U5R9 776 aa11.29□□□□□ -0.6
CHMP3-209ENST00000494623 AGAP9Q5VTM2 703 aa11.29□□□□□ -0.6
CHMP3-209ENST00000494623 FAM171A1Q5VUB5 890 aa11.29□□□□□ -0.6
CHMP3-209ENST00000494623 CPSF7Q8N684 471 aaKnown RBP11.29□□□□□ -0.6
CHMP3-209ENST00000494623 RNF148Q8N7C7 305 aa11.29□□□□□ -0.6
CHMP3-209ENST00000494623 PCSK9Q8NBP7 692 aaKnown RBP11.29□□□□□ -0.6
CHMP3-209ENST00000494623 OR13J1Q8NGT2 312 aa11.29□□□□□ -0.6
CHMP3-209ENST00000494623 CALML6Q8TD86 181 aa11.29□□□□□ -0.6
CHMP3-209ENST00000494623 PDCD6IPQ8WUM4 868 aaKnown RBP11.29□□□□□ -0.6
CHMP3-209ENST00000494623 USP13Q92995 863 aaPredicted RBP11.29□□□□□ -0.6
CHMP3-209ENST00000494623 CNDP1Q96KN2 507 aa11.29□□□□□ -0.6
CHMP3-209ENST00000494623 RPRD1AQ96P16 312 aaPredicted RBP11.29□□□□□ -0.6
CHMP3-209ENST00000494623 DDX50Q9BQ39 737 aaKnown RBP11.29□□□□□ -0.6
CHMP3-209ENST00000494623 VWA7Q9Y334 891 aa11.29□□□□□ -0.6
CHMP3-209ENST00000494623 NPHS1O60500 1241 aa11.28□□□□□ -0.6
CHMP3-209ENST00000494623 SP100P23497 879 aaPredicted RBP11.28□□□□□ -0.6
CHMP3-209ENST00000494623 LEPRP48357 1165 aaKnown RBP11.28□□□□□ -0.6
CHMP3-209ENST00000494623 ARSDP51689 593 aa11.28□□□□□ -0.6
CHMP3-209ENST00000494623 KPNA2P52292 529 aaKnown RBP11.28□□□□□ -0.6
CHMP3-209ENST00000494623 PKNOX1P55347 436 aa11.28□□□□□ -0.6
CHMP3-209ENST00000494623 PRAMEP78395 509 aa11.28□□□□□ -0.6
CHMP3-209ENST00000494623 CAP1Q01518 475 aa11.28□□□□□ -0.6
CHMP3-209ENST00000494623 TAF10Q12962 218 aa11.28□□□□□ -0.6
CHMP3-209ENST00000494623 MBTPS1Q14703 1052 aa11.28□□□□□ -0.6
CHMP3-209ENST00000494623 LBRQ14739 615 aaKnown RBP11.28□□□□□ -0.6
CHMP3-209ENST00000494623 SIRPB2Q5JXA9 342 aa11.28□□□□□ -0.6
CHMP3-209ENST00000494623 RASIP1Q5U651 963 aa11.28□□□□□ -0.6
CHMP3-209ENST00000494623 MSANTD2Q6P1R3 559 aa11.28□□□□□ -0.6
CHMP3-209ENST00000494623 C16orf89Q6UX73 402 aa11.28□□□□□ -0.6
CHMP3-209ENST00000494623 KIAA0408Q6ZU52 694 aa11.28□□□□□ -0.6
CHMP3-209ENST00000494623 ARHGAP18Q8N392 663 aa11.28□□□□□ -0.6
CHMP3-209ENST00000494623 PGBD5Q8N414 524 aa11.28□□□□□ -0.6
CHMP3-209ENST00000494623 ANKRD49Q8WVL7 239 aa11.28□□□□□ -0.6
CHMP3-209ENST00000494623 LINC01599Q8WXQ3 324 aa11.28□□□□□ -0.6
CHMP3-209ENST00000494623 JADE3Q92613 823 aa11.28□□□□□ -0.6
CHMP3-209ENST00000494623 FUBP3Q96I24 572 aaKnown RBP eCLIP11.28□□□□□ -0.6
CHMP3-209ENST00000494623 CCDC28BQ9BUN5 200 aa11.28□□□□□ -0.6
CHMP3-209ENST00000494623 YIPF3Q9GZM5 350 aa11.28□□□□□ -0.6
CHMP3-209ENST00000494623 ATP13A1Q9HD20 1204 aa11.28□□□□□ -0.6
CHMP3-209ENST00000494623 MARCH2Q9P0N8 246 aa11.28□□□□□ -0.6
CHMP3-209ENST00000494623 CRYL1Q9Y2S2 319 aa11.28□□□□□ -0.6
CHMP3-209ENST00000494623 COPG1Q9Y678 874 aaKnown RBP11.28□□□□□ -0.6
CHMP3-209ENST00000494623 PTPRDP23468 1912 aa11.28□□□□□ -0.6
CHMP3-209ENST00000494623 MAGEA13PA6NCF6 341 aa11.28□□□□□ -0.6
CHMP3-209ENST00000494623 FAM155AB1AL88 458 aaPredicted RBP11.28□□□□□ -0.6
CHMP3-209ENST00000494623 LTA4HP09960 611 aaKnown RBP11.28□□□□□ -0.6
CHMP3-209ENST00000494623 ARSAP15289 507 aa11.28□□□□□ -0.6
CHMP3-209ENST00000494623 ACVRL1P37023 503 aa11.28□□□□□ -0.6
CHMP3-209ENST00000494623 MSLNQ13421 630 aaPredicted RBP11.28□□□□□ -0.6
CHMP3-209ENST00000494623 ART3Q13508 389 aa11.28□□□□□ -0.6
CHMP3-209ENST00000494623 PTPRCAPQ14761 206 aa11.28□□□□□ -0.6
CHMP3-209ENST00000494623 TRIP10Q15642 601 aa11.28□□□□□ -0.6
CHMP3-209ENST00000494623 MGAT5BQ3V5L5 792 aa11.28□□□□□ -0.6
CHMP3-209ENST00000494623 PIWIL4Q7Z3Z4 852 aaKnown RBP11.28□□□□□ -0.6
CHMP3-209ENST00000494623 ADGRG6Q86SQ4 1221 aa11.28□□□□□ -0.6
CHMP3-209ENST00000494623 GABPB2Q8TAK5 448 aaPredicted RBP11.28□□□□□ -0.6
CHMP3-209ENST00000494623 GDPD5Q8WTR4 605 aa11.28□□□□□ -0.6
CHMP3-209ENST00000494623 GATA6Q92908 595 aa11.28□□□□□ -0.6
CHMP3-209ENST00000494623 BTN2A3PQ96KV6 586 aa11.28□□□□□ -0.6
CHMP3-209ENST00000494623 SEPT5Q99719 369 aaPredicted RBP11.28□□□□□ -0.6
CHMP3-209ENST00000494623 NPAS2Q99743 824 aa11.28□□□□□ -0.6
CHMP3-209ENST00000494623 EBF3Q9H4W6 596 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms