RNA–Protein interactions for RNA: ENST00000494518.1

SKA1-205, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2

Gene SKA1, Length 746 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-205ENST00000494518 CCDC3Q9BQI4 270 aa12.79□□□□□ -0.36
SKA1-205ENST00000494518 SELENOOQ9BVL4 669 aa12.79□□□□□ -0.36
SKA1-205ENST00000494518 BOCQ9BWV1 1114 aa12.79□□□□□ -0.36
SKA1-205ENST00000494518 OSBPL1AQ9BXW6 950 aa12.79□□□□□ -0.36
SKA1-205ENST00000494518 SLC13A1Q9BZW2 595 aa12.79□□□□□ -0.36
SKA1-205ENST00000494518 SEMA4CQ9C0C4 833 aa12.79□□□□□ -0.36
SKA1-205ENST00000494518 ADAM22Q9P0K1 906 aa12.79□□□□□ -0.36
SKA1-205ENST00000494518 MYO18BQ8IUG5 2567 aa12.79□□□□□ -0.36
SKA1-205ENST00000494518 RASA4BC9J798 803 aa12.78□□□□□ -0.36
SKA1-205ENST00000494518 LMO7DNF2Z398 122 aa12.78□□□□□ -0.36
SKA1-205ENST00000494518 PYCARD-AS1I3L0S3 204 aa12.78□□□□□ -0.36
SKA1-205ENST00000494518 ERVH48-1M5A8F1 160 aa12.78□□□□□ -0.36
SKA1-205ENST00000494518 TPP1O14773 563 aa12.78□□□□□ -0.36
SKA1-205ENST00000494518 CCP110O43303 1012 aa12.78□□□□□ -0.36
SKA1-205ENST00000494518 RASA4O43374 803 aa12.78□□□□□ -0.36
SKA1-205ENST00000494518 XPAP23025 273 aaPredicted RBP12.78□□□□□ -0.36
SKA1-205ENST00000494518 NSFP46459 744 aaKnown RBP12.78□□□□□ -0.36
SKA1-205ENST00000494518 JAM2P57087 298 aa12.78□□□□□ -0.36
SKA1-205ENST00000494518 PPARDQ03181 441 aa12.78□□□□□ -0.36
SKA1-205ENST00000494518 RAD51Q06609 339 aa12.78□□□□□ -0.36
SKA1-205ENST00000494518 KRT31Q15323 416 aa12.78□□□□□ -0.36
SKA1-205ENST00000494518 EFHC2Q5JST6 749 aa12.78□□□□□ -0.36
SKA1-205ENST00000494518 KIAA1614Q5VZ46 1190 aa12.78□□□□□ -0.36
SKA1-205ENST00000494518 MACC1Q6ZN28 852 aa12.78□□□□□ -0.36
SKA1-205ENST00000494518 RD3Q7Z3Z2 195 aa12.78□□□□□ -0.36
SKA1-205ENST00000494518 SLFN11Q7Z7L1 901 aa12.78□□□□□ -0.36
SKA1-205ENST00000494518 ZSCAN30Q86W11 494 aa12.78□□□□□ -0.36
SKA1-205ENST00000494518 RTL3Q8N8U3 475 aaKnown RBP12.78□□□□□ -0.36
SKA1-205ENST00000494518 PCDH19Q8TAB3 1148 aa12.78□□□□□ -0.36
SKA1-205ENST00000494518 CENPIQ92674 756 aaPredicted RBP12.78□□□□□ -0.36
SKA1-205ENST00000494518 GLMNQ92990 594 aa12.78□□□□□ -0.36
SKA1-205ENST00000494518 ARHGEF26Q96DR7 871 aa12.78□□□□□ -0.36
SKA1-205ENST00000494518 PRR11Q96HE9 360 aaPredicted RBP12.78□□□□□ -0.36
SKA1-205ENST00000494518 PCMTD1Q96MG8 357 aaPredicted RBP12.78□□□□□ -0.36
SKA1-205ENST00000494518 TTYH3Q9C0H2 523 aa12.78□□□□□ -0.36
SKA1-205ENST00000494518 NCKIPSDQ9NZQ3 722 aa12.78□□□□□ -0.36
SKA1-205ENST00000494518 LHX3Q9UBR4 397 aa12.78□□□□□ -0.36
SKA1-205ENST00000494518 RABGEF1Q9UJ41 708 aa12.78□□□□□ -0.36
SKA1-205ENST00000494518 PADI4Q9UM07 663 aa12.78□□□□□ -0.36
SKA1-205ENST00000494518 DOLKQ9UPQ8 538 aa12.78□□□□□ -0.36
SKA1-205ENST00000494518 SPTA1P02549 2419 aa12.78□□□□□ -0.36
SKA1-205ENST00000494518 TNFSF15O95150 251 aa12.77□□□□□ -0.37
SKA1-205ENST00000494518 PCCBP05166 539 aa12.77□□□□□ -0.37
SKA1-205ENST00000494518 UNGP13051 313 aaPredicted RBP12.77□□□□□ -0.37
SKA1-205ENST00000494518 STAT1P42224 750 aa12.77□□□□□ -0.37
SKA1-205ENST00000494518 RPIAP49247 311 aa12.77□□□□□ -0.37
SKA1-205ENST00000494518 UCNP55089 124 aa12.77□□□□□ -0.37
SKA1-205ENST00000494518 SPIDRQ14159 915 aa12.77□□□□□ -0.37
SKA1-205ENST00000494518 CYTH1Q15438 398 aa12.77□□□□□ -0.37
SKA1-205ENST00000494518 CLEC16AQ2KHT3 1053 aa12.77□□□□□ -0.37
SKA1-205ENST00000494518 ALG11Q2TAA5 492 aa12.77□□□□□ -0.37
SKA1-205ENST00000494518 ZSCAN23Q3MJ62 389 aa12.77□□□□□ -0.37
SKA1-205ENST00000494518 KCTD16Q68DU8 428 aa12.77□□□□□ -0.37
SKA1-205ENST00000494518 ENPP7Q6UWV6 458 aa12.77□□□□□ -0.37
SKA1-205ENST00000494518 TRIM72Q6ZMU5 477 aa12.77□□□□□ -0.37
SKA1-205ENST00000494518 B3GNT8Q7Z7M8 397 aa12.77□□□□□ -0.37
SKA1-205ENST00000494518 LSM14AQ8ND56 463 aaKnown RBP12.77□□□□□ -0.37
SKA1-205ENST00000494518 NTAN1Q96AB6 310 aa12.77□□□□□ -0.37
SKA1-205ENST00000494518 CCDC74AQ96AQ1 378 aa12.77□□□□□ -0.37
SKA1-205ENST00000494518 CELF6Q96J87 481 aaKnown RBP12.77□□□□□ -0.37
SKA1-205ENST00000494518 SLC46A1Q96NT5 459 aa12.77□□□□□ -0.37
SKA1-205ENST00000494518 MCEEQ96PE7 176 aa12.77□□□□□ -0.37
SKA1-205ENST00000494518 C1QTNF7Q9BXJ2 289 aa12.77□□□□□ -0.37
SKA1-205ENST00000494518 FOXP3Q9BZS1 431 aa12.77□□□□□ -0.37
SKA1-205ENST00000494518 EPB41L5Q9HCM4 733 aa12.77□□□□□ -0.37
SKA1-205ENST00000494518 GPATCH2LQ9NWQ4 482 aa12.77□□□□□ -0.37
SKA1-205ENST00000494518 OR1A2Q9Y585 309 aa12.77□□□□□ -0.37
SKA1-205ENST00000494518 TLN1Q9Y490 2541 aaKnown RBP12.76□□□□□ -0.37
SKA1-205ENST00000494518 ZSCAN5CA6NGD5 496 aaPredicted RBP12.76□□□□□ -0.37
SKA1-205ENST00000494518 LZTS3O60299 673 aaPredicted RBP12.76□□□□□ -0.37
SKA1-205ENST00000494518 C6P13671 934 aa12.76□□□□□ -0.37
SKA1-205ENST00000494518 CTSEP14091 401 aa12.76□□□□□ -0.37
SKA1-205ENST00000494518 HGFP14210 728 aa12.76□□□□□ -0.37
SKA1-205ENST00000494518 RPL7AP62424 266 aaKnown RBP12.76□□□□□ -0.37
SKA1-205ENST00000494518 YPEL5P62699 121 aa12.76□□□□□ -0.37
SKA1-205ENST00000494518 RHDQ02161 417 aa12.76□□□□□ -0.37
SKA1-205ENST00000494518 VAC14Q08AM6 782 aa12.76□□□□□ -0.37
SKA1-205ENST00000494518 LRRC14Q15048 493 aa12.76□□□□□ -0.37
SKA1-205ENST00000494518 SYCP1Q15431 976 aa12.76□□□□□ -0.37
SKA1-205ENST00000494518 WSCD2Q2TBF2 565 aa12.76□□□□□ -0.37
SKA1-205ENST00000494518 FKBP15Q5T1M5 1219 aa12.76□□□□□ -0.37
SKA1-205ENST00000494518 ESRP1Q6NXG1 681 aaKnown RBP12.76□□□□□ -0.37
SKA1-205ENST00000494518 DNAJC24Q6P3W2 148 aa12.76□□□□□ -0.37
SKA1-205ENST00000494518 ZSWIM9Q86XI8 627 aa12.76□□□□□ -0.37
SKA1-205ENST00000494518 SDR16C5Q8N3Y7 309 aa12.76□□□□□ -0.37
SKA1-205ENST00000494518 TPCN2Q8NHX9 752 aa12.76□□□□□ -0.37
SKA1-205ENST00000494518 WDR36Q8NI36 951 aaKnown RBP12.76□□□□□ -0.37
SKA1-205ENST00000494518 NAT6Q93015 286 aa12.76□□□□□ -0.37
SKA1-205ENST00000494518 DPH1Q9BZG8 443 aa12.76□□□□□ -0.37
SKA1-205ENST00000494518 PCDH12Q9NPG4 1184 aa12.76□□□□□ -0.37
SKA1-205ENST00000494518 CHMP5Q9NZZ3 219 aa12.76□□□□□ -0.37
SKA1-205ENST00000494518 UBA2Q9UBT2 640 aaPredicted RBP12.76□□□□□ -0.37
SKA1-205ENST00000494518 SIK3Q9Y2K2 1263 aa12.76□□□□□ -0.37
SKA1-205ENST00000494518 BOD1L1Q8NFC6 3051 aa12.76□□□□□ -0.37
SKA1-205ENST00000494518 CCDC187A0A096LP49 1063 aa12.75□□□□□ -0.37
SKA1-205ENST00000494518 CXorf51AA0A1B0GTR3 108 aa12.75□□□□□ -0.37
SKA1-205ENST00000494518 CDRT15L2A8MXV6 281 aa12.75□□□□□ -0.37
SKA1-205ENST00000494518 J3KR12 359 aa12.75□□□□□ -0.37
SKA1-205ENST00000494518 TCEA3O75764 348 aa12.75□□□□□ -0.37
SKA1-205ENST00000494518 RPLP0P05388 317 aaKnown RBP12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms