RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 GOLGA6DP0CG33 693 aa10.4□□□□□ -0.74
SKA1-204ENST00000488454 CR2P20023 1033 aa10.4□□□□□ -0.74
SKA1-204ENST00000488454 XPAP23025 273 aaPredicted RBP10.4□□□□□ -0.74
SKA1-204ENST00000488454 OXTRP30559 389 aa10.4□□□□□ -0.74
SKA1-204ENST00000488454 GKP32189 559 aa10.4□□□□□ -0.74
SKA1-204ENST00000488454 CD86P42081 329 aa10.4□□□□□ -0.74
SKA1-204ENST00000488454 RGRP47804 291 aa10.4□□□□□ -0.74
SKA1-204ENST00000488454 PXNP49023 591 aaPredicted RBP10.4□□□□□ -0.74
SKA1-204ENST00000488454 FNTAP49354 379 aa10.4□□□□□ -0.74
SKA1-204ENST00000488454 POLR2LP62875 67 aaKnown RBP10.4□□□□□ -0.74
SKA1-204ENST00000488454 DSC2Q02487 901 aa10.4□□□□□ -0.74
SKA1-204ENST00000488454 AGERQ15109 404 aa10.4□□□□□ -0.74
SKA1-204ENST00000488454 CYP1B1Q16678 543 aa10.4□□□□□ -0.74
SKA1-204ENST00000488454 WHAMMP3Q1A5X7 153 aa10.4□□□□□ -0.74
SKA1-204ENST00000488454 PARP6Q2NL67 630 aa10.4□□□□□ -0.74
SKA1-204ENST00000488454 P3H1Q32P28 736 aa10.4□□□□□ -0.74
SKA1-204ENST00000488454 POM121L1PQ3SYA9 428 aa10.4□□□□□ -0.74
SKA1-204ENST00000488454 USP39Q53GS9 565 aaKnown RBP10.4□□□□□ -0.74
SKA1-204ENST00000488454 ZNF805Q5CZA5 627 aa10.4□□□□□ -0.74
SKA1-204ENST00000488454 CCDC70Q6NSX1 233 aa10.4□□□□□ -0.74
SKA1-204ENST00000488454 FBXL19Q6PCT2 694 aa10.4□□□□□ -0.74
SKA1-204ENST00000488454 TSSK4Q6SA08 328 aa10.4□□□□□ -0.74
SKA1-204ENST00000488454 CACUL1Q86Y37 369 aa10.4□□□□□ -0.74
SKA1-204ENST00000488454 CAMK1DQ8IU85 385 aa10.4□□□□□ -0.74
SKA1-204ENST00000488454 KLHL7Q8IXQ5 586 aa10.4□□□□□ -0.74
SKA1-204ENST00000488454 NDUFAF2Q8N183 169 aa10.4□□□□□ -0.74
SKA1-204ENST00000488454 HDDC3Q8N4P3 179 aa10.4□□□□□ -0.74
SKA1-204ENST00000488454 C12orf50Q8NA57 414 aaPredicted RBP10.4□□□□□ -0.74
SKA1-204ENST00000488454 MNS1Q8NEH6 495 aa10.4□□□□□ -0.74
SKA1-204ENST00000488454 MDGA1Q8NFP4 955 aa10.4□□□□□ -0.74
SKA1-204ENST00000488454 CCDC110Q8TBZ0 833 aa10.4□□□□□ -0.74
SKA1-204ENST00000488454 HCAR2Q8TDS4 363 aa10.4□□□□□ -0.74
SKA1-204ENST00000488454 PDCD6IPQ8WUM4 868 aaKnown RBP10.4□□□□□ -0.74
SKA1-204ENST00000488454 KLHL32Q96NJ5 620 aa10.4□□□□□ -0.74
SKA1-204ENST00000488454 FCRL5Q96RD9 977 aa10.4□□□□□ -0.74
SKA1-204ENST00000488454 PRRX2Q99811 253 aa10.4□□□□□ -0.74
SKA1-204ENST00000488454 LRFN3Q9BTN0 628 aa10.4□□□□□ -0.74
SKA1-204ENST00000488454 FAM126AQ9BYI3 521 aaPredicted RBP10.4□□□□□ -0.74
SKA1-204ENST00000488454 SLC6A17Q9H1V8 727 aa10.4□□□□□ -0.74
SKA1-204ENST00000488454 PABPC3Q9H361 631 aaKnown RBP10.4□□□□□ -0.74
SKA1-204ENST00000488454 SUV39H2Q9H5I1 410 aa10.4□□□□□ -0.74
SKA1-204ENST00000488454 CD248Q9HCU0 757 aa10.4□□□□□ -0.74
SKA1-204ENST00000488454 ITM2CQ9NQX7 267 aa10.4□□□□□ -0.74
SKA1-204ENST00000488454 PRMT8Q9NR22 394 aaPredicted RBP10.4□□□□□ -0.74
SKA1-204ENST00000488454 FBXL12Q9NXK8 326 aa10.4□□□□□ -0.74
SKA1-204ENST00000488454 GOLGA6AQ9NYA3 693 aa10.4□□□□□ -0.74
SKA1-204ENST00000488454 PAK5Q9P286 719 aa10.4□□□□□ -0.74
SKA1-204ENST00000488454 FKBPLQ9UIM3 349 aa10.4□□□□□ -0.74
SKA1-204ENST00000488454 AAR2Q9Y312 384 aaKnown RBP10.4□□□□□ -0.74
SKA1-204ENST00000488454 WASF2Q9Y6W5 498 aa10.4□□□□□ -0.74
SKA1-204ENST00000488454 TRIOO75962 3097 aa10.39□□□□□ -0.75
SKA1-204ENST00000488454 CCDC163A0A0D9SF12 145 aa10.39□□□□□ -0.75
SKA1-204ENST00000488454 A0A1W2PP55 124 aa10.39□□□□□ -0.75
SKA1-204ENST00000488454 E7EVH7 732 aa10.39□□□□□ -0.75
SKA1-204ENST00000488454 PDE2AO00408 941 aaPredicted RBP10.39□□□□□ -0.75
SKA1-204ENST00000488454 ST8SIA5O15466 376 aa10.39□□□□□ -0.75
SKA1-204ENST00000488454 PSMD3O43242 534 aa10.39□□□□□ -0.75
SKA1-204ENST00000488454 SOCS5O75159 536 aa10.39□□□□□ -0.75
SKA1-204ENST00000488454 RNASEH2AO75792 299 aaKnown RBP10.39□□□□□ -0.75
SKA1-204ENST00000488454 PIGNO95427 931 aa10.39□□□□□ -0.75
SKA1-204ENST00000488454 ECEL1O95672 775 aa10.39□□□□□ -0.75
SKA1-204ENST00000488454 GAS8O95995 478 aa10.39□□□□□ -0.75
SKA1-204ENST00000488454 CTSLP07711 333 aa10.39□□□□□ -0.75
SKA1-204ENST00000488454 NFKB1P19838 968 aa10.39□□□□□ -0.75
SKA1-204ENST00000488454 NFKBIAP25963 317 aa10.39□□□□□ -0.75
SKA1-204ENST00000488454 LMAN1P49257 510 aa10.39□□□□□ -0.75
SKA1-204ENST00000488454 EPHB1P54762 984 aa10.39□□□□□ -0.75
SKA1-204ENST00000488454 GEMP55040 296 aa10.39□□□□□ -0.75
SKA1-204ENST00000488454 NIPAL4Q0D2K0 466 aa10.39□□□□□ -0.75
SKA1-204ENST00000488454 ANGPT1Q15389 498 aa10.39□□□□□ -0.75
SKA1-204ENST00000488454 PPP1R7Q15435 360 aa10.39□□□□□ -0.75
SKA1-204ENST00000488454 ARMC12Q5T9G4 340 aa10.39□□□□□ -0.75
SKA1-204ENST00000488454 ALG1LQ6GMV1 187 aa10.39□□□□□ -0.75
SKA1-204ENST00000488454 BRAT1Q6PJG6 821 aa10.39□□□□□ -0.75
SKA1-204ENST00000488454 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP10.39□□□□□ -0.75
SKA1-204ENST00000488454 TTC7BQ86TV6 843 aa10.39□□□□□ -0.75
SKA1-204ENST00000488454 KBTBD6Q86V97 674 aa10.39□□□□□ -0.75
SKA1-204ENST00000488454 LONP2Q86WA8 852 aa10.39□□□□□ -0.75
SKA1-204ENST00000488454 RASSF3Q86WH2 238 aa10.39□□□□□ -0.75
SKA1-204ENST00000488454 SPATA4Q8NEY3 305 aa10.39□□□□□ -0.75
SKA1-204ENST00000488454 ARRDC2Q8TBH0 407 aa10.39□□□□□ -0.75
SKA1-204ENST00000488454 FAM174AQ8TBP5 190 aa10.39□□□□□ -0.75
SKA1-204ENST00000488454 HPS1Q92902 700 aa10.39□□□□□ -0.75
SKA1-204ENST00000488454 RTP4Q96DX8 246 aa10.39□□□□□ -0.75
SKA1-204ENST00000488454 IFT43Q96FT9 208 aa10.39□□□□□ -0.75
SKA1-204ENST00000488454 IMP4Q96G21 291 aaKnown RBP10.39□□□□□ -0.75
SKA1-204ENST00000488454 SPACA7Q96KW9 195 aa10.39□□□□□ -0.75
SKA1-204ENST00000488454 RBM15Q96T37 977 aaKnown RBP eCLIP10.39□□□□□ -0.75
SKA1-204ENST00000488454 ADGRE3Q9BY15 652 aa10.39□□□□□ -0.75
SKA1-204ENST00000488454 TPSD1Q9BZJ3 242 aa10.39□□□□□ -0.75
SKA1-204ENST00000488454 GBA3Q9H227 469 aa10.39□□□□□ -0.75
SKA1-204ENST00000488454 FAM153AQ9UHL3 310 aa10.39□□□□□ -0.75
SKA1-204ENST00000488454 SARDHQ9UL12 918 aa10.39□□□□□ -0.75
SKA1-204ENST00000488454 PCDHGC4Q9Y5F7 938 aa10.39□□□□□ -0.75
SKA1-204ENST00000488454 RAI2Q9Y5P3 530 aa10.39□□□□□ -0.75
SKA1-204ENST00000488454 MUC3AQ02505 3323 aa10.39□□□□□ -0.75
SKA1-204ENST00000488454 C16orf96A6NNT2 1141 aa10.38□□□□□ -0.75
SKA1-204ENST00000488454 NDUFS2O75306 463 aa10.38□□□□□ -0.75
SKA1-204ENST00000488454 PMPCBO75439 489 aa10.38□□□□□ -0.75
SKA1-204ENST00000488454 GJB3O75712 270 aa10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms