RNA–Protein interactions for RNA: ENST00000481335.5

SQSTM1-207, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 562 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-207ENST00000481335 ZWILCHQ9H900 591 aa12.26□□□□□ -0.45
SQSTM1-207ENST00000481335 TAS2R14Q9NYV8 317 aa12.26□□□□□ -0.45
SQSTM1-207ENST00000481335 APOBEC3BQ9UH17 382 aaKnown RBP12.26□□□□□ -0.45
SQSTM1-207ENST00000481335 GGT7Q9UJ14 662 aa12.26□□□□□ -0.45
SQSTM1-207ENST00000481335 ITM2BQ9Y287 266 aa12.26□□□□□ -0.45
SQSTM1-207ENST00000481335 BZW2Q9Y6E2 419 aaKnown RBP12.26□□□□□ -0.45
SQSTM1-207ENST00000481335 SMG1Q96Q15 3661 aaKnown RBP12.25□□□□□ -0.45
SQSTM1-207ENST00000481335 COL27A1Q8IZC6 1860 aaPredicted RBP12.25□□□□□ -0.45
SQSTM1-207ENST00000481335 LY6G6EA0A0G2JKS1 128 aa12.25□□□□□ -0.45
SQSTM1-207ENST00000481335 A0A1W2PQ67 120 aa12.25□□□□□ -0.45
SQSTM1-207ENST00000481335 EME2A4GXA9 379 aaPredicted RBP12.25□□□□□ -0.45
SQSTM1-207ENST00000481335 RRP8O43159 456 aaKnown RBP12.25□□□□□ -0.45
SQSTM1-207ENST00000481335 DAPK3O43293 454 aa12.25□□□□□ -0.45
SQSTM1-207ENST00000481335 OPA1O60313 960 aa12.25□□□□□ -0.45
SQSTM1-207ENST00000481335 LRCH4O75427 683 aa12.25□□□□□ -0.45
SQSTM1-207ENST00000481335 DXOO77932 396 aaKnown RBP12.25□□□□□ -0.45
SQSTM1-207ENST00000481335 MT-CO3P00414 261 aa12.25□□□□□ -0.45
SQSTM1-207ENST00000481335 FTLP02792 175 aaPredicted RBP12.25□□□□□ -0.45
SQSTM1-207ENST00000481335 TIMP2P16035 220 aa12.25□□□□□ -0.45
SQSTM1-207ENST00000481335 SERPINA4P29622 427 aa12.25□□□□□ -0.45
SQSTM1-207ENST00000481335 ACTN2P35609 894 aa12.25□□□□□ -0.45
SQSTM1-207ENST00000481335 RPIAP49247 311 aa12.25□□□□□ -0.45
SQSTM1-207ENST00000481335 RENBPP51606 427 aa12.25□□□□□ -0.45
SQSTM1-207ENST00000481335 TPM4P67936 248 aa12.25□□□□□ -0.45
SQSTM1-207ENST00000481335 IL10RBQ08334 325 aa12.25□□□□□ -0.45
SQSTM1-207ENST00000481335 EIF2B5Q13144 721 aaKnown RBP12.25□□□□□ -0.45
SQSTM1-207ENST00000481335 CYTH1Q15438 398 aa12.25□□□□□ -0.45
SQSTM1-207ENST00000481335 COL28A1Q2UY09 1125 aa12.25□□□□□ -0.45
SQSTM1-207ENST00000481335 LEKR1Q6ZMV7 388 aa12.25□□□□□ -0.45
SQSTM1-207ENST00000481335 LRRC69Q6ZNQ3 347 aa12.25□□□□□ -0.45
SQSTM1-207ENST00000481335 ZNF571Q7Z3V5 609 aaPredicted RBP12.25□□□□□ -0.45
SQSTM1-207ENST00000481335 VPS36Q86VN1 386 aa12.25□□□□□ -0.45
SQSTM1-207ENST00000481335 MARCH9Q86YJ5 346 aa12.25□□□□□ -0.45
SQSTM1-207ENST00000481335 FSTL5Q8N475 847 aaPredicted RBP12.25□□□□□ -0.45
SQSTM1-207ENST00000481335 SYN2Q92777 582 aaPredicted RBP12.25□□□□□ -0.45
SQSTM1-207ENST00000481335 NAT6Q93015 286 aa12.25□□□□□ -0.45
SQSTM1-207ENST00000481335 ZNF653Q96CK0 615 aa12.25□□□□□ -0.45
SQSTM1-207ENST00000481335 ZNF599Q96NL3 588 aa12.25□□□□□ -0.45
SQSTM1-207ENST00000481335 SLC13A1Q9BZW2 595 aa12.25□□□□□ -0.45
SQSTM1-207ENST00000481335 ISCUQ9H1K1 167 aa12.25□□□□□ -0.45
SQSTM1-207ENST00000481335 SP110Q9HB58 689 aa12.25□□□□□ -0.45
SQSTM1-207ENST00000481335 CNOT8Q9UFF9 292 aaKnown RBP12.25□□□□□ -0.45
SQSTM1-207ENST00000481335 AK5Q9Y6K8 562 aa12.25□□□□□ -0.45
SQSTM1-207ENST00000481335 U3KQA8 63 aa12.25□□□□□ -0.45
SQSTM1-207ENST00000481335 BPTFQ12830 3046 aa12.24□□□□□ -0.45
SQSTM1-207ENST00000481335 A0A1W2PQJ5 194 aa12.24□□□□□ -0.45
SQSTM1-207ENST00000481335 TMCO5BA8MYB1 307 aa12.24□□□□□ -0.45
SQSTM1-207ENST00000481335 LMO7DNF2Z398 122 aa12.24□□□□□ -0.45
SQSTM1-207ENST00000481335 DDX3XO00571 662 aaKnown RBP eCLIP12.24□□□□□ -0.453e-52■■■□□ 17.8
SQSTM1-207ENST00000481335 MMP20O60882 483 aa12.24□□□□□ -0.45
SQSTM1-207ENST00000481335 TCEA3O75764 348 aa12.24□□□□□ -0.45
SQSTM1-207ENST00000481335 PALMO75781 387 aa12.24□□□□□ -0.45
SQSTM1-207ENST00000481335 ERCC2P18074 760 aa12.24□□□□□ -0.45
SQSTM1-207ENST00000481335 NFKBIAP25963 317 aa12.24□□□□□ -0.45
SQSTM1-207ENST00000481335 HTR1BP28222 390 aa12.24□□□□□ -0.45
SQSTM1-207ENST00000481335 MIPP30301 263 aa12.24□□□□□ -0.45
SQSTM1-207ENST00000481335 HSPA9P38646 679 aaKnown RBP12.24□□□□□ -0.45
SQSTM1-207ENST00000481335 MMP12P39900 470 aa12.24□□□□□ -0.45
SQSTM1-207ENST00000481335 EIF2S3P41091 472 aaKnown RBP12.24□□□□□ -0.45
SQSTM1-207ENST00000481335 PAPOLAP51003 745 aaKnown RBP12.24□□□□□ -0.45
SQSTM1-207ENST00000481335 AP1S1P61966 158 aa12.24□□□□□ -0.45
SQSTM1-207ENST00000481335 POLR2LP62875 67 aaKnown RBP12.24□□□□□ -0.45
SQSTM1-207ENST00000481335 PPARDQ03181 441 aa12.24□□□□□ -0.45
SQSTM1-207ENST00000481335 LRRC14Q15048 493 aa12.24□□□□□ -0.45
SQSTM1-207ENST00000481335 DPYSL2Q16555 572 aa12.24□□□□□ -0.45
SQSTM1-207ENST00000481335 KLHL40Q2TBA0 621 aa12.24□□□□□ -0.45
SQSTM1-207ENST00000481335 TBC1D25Q3MII6 688 aa12.24□□□□□ -0.45
SQSTM1-207ENST00000481335 C6orf132Q5T0Z8 1188 aa12.24□□□□□ -0.45
SQSTM1-207ENST00000481335 LVRNQ6Q4G3 990 aa12.24□□□□□ -0.45
SQSTM1-207ENST00000481335 IGF2-ASQ6U949 168 aa12.24□□□□□ -0.45
SQSTM1-207ENST00000481335 CYP4V2Q6ZWL3 525 aaPredicted RBP12.24□□□□□ -0.45
SQSTM1-207ENST00000481335 PHACTR4Q8IZ21 702 aa12.24□□□□□ -0.45
SQSTM1-207ENST00000481335 IFI44Q8TCB0 444 aa12.24□□□□□ -0.45
SQSTM1-207ENST00000481335 FGF11Q92914 225 aa12.24□□□□□ -0.45
SQSTM1-207ENST00000481335 ECHDC3Q96DC8 303 aa12.24□□□□□ -0.45
SQSTM1-207ENST00000481335 PSKH2Q96QS6 385 aa12.24□□□□□ -0.45
SQSTM1-207ENST00000481335 KCTD15Q96SI1 283 aaPredicted RBP12.24□□□□□ -0.45
SQSTM1-207ENST00000481335 FUCA2Q9BTY2 467 aa12.24□□□□□ -0.45
SQSTM1-207ENST00000481335 CINPQ9BW66 212 aaPredicted RBP12.24□□□□□ -0.45
SQSTM1-207ENST00000481335 BOCQ9BWV1 1114 aa12.24□□□□□ -0.45
SQSTM1-207ENST00000481335 SLC39A8Q9C0K1 460 aa12.24□□□□□ -0.45
SQSTM1-207ENST00000481335 ABCG4Q9H172 646 aa12.24□□□□□ -0.45
SQSTM1-207ENST00000481335 KCTD5Q9NXV2 234 aa12.24□□□□□ -0.45
SQSTM1-207ENST00000481335 ATP8A1Q9Y2Q0 1164 aa12.24□□□□□ -0.45
SQSTM1-207ENST00000481335 FASNP49327 2511 aaKnown RBP12.24□□□□□ -0.45
SQSTM1-207ENST00000481335 SHROOM3Q8TF72 1996 aa12.23□□□□□ -0.45
SQSTM1-207ENST00000481335 H3BRJ5 948 aa12.23□□□□□ -0.45
SQSTM1-207ENST00000481335 J3KR12 359 aa12.23□□□□□ -0.45
SQSTM1-207ENST00000481335 INSIG1O15503 277 aa12.23□□□□□ -0.45
SQSTM1-207ENST00000481335 ATMINO43313 823 aaPredicted RBP12.23□□□□□ -0.45
SQSTM1-207ENST00000481335 NEBLO76041 1014 aa12.23□□□□□ -0.45
SQSTM1-207ENST00000481335 PIGNO95427 931 aa12.23□□□□□ -0.45
SQSTM1-207ENST00000481335 SERPINC1P01008 464 aa12.23□□□□□ -0.45
SQSTM1-207ENST00000481335 ALPIP09923 528 aa12.23□□□□□ -0.45
SQSTM1-207ENST00000481335 C6P13671 934 aa12.23□□□□□ -0.45
SQSTM1-207ENST00000481335 EIF4A3P38919 411 aaKnown RBP12.23□□□□□ -0.45
SQSTM1-207ENST00000481335 ARL4AP40617 200 aa12.23□□□□□ -0.45
SQSTM1-207ENST00000481335 ERVPABLB-1P60509 514 aa12.23□□□□□ -0.45
SQSTM1-207ENST00000481335 MTM1Q13496 603 aa12.23□□□□□ -0.45
SQSTM1-207ENST00000481335 DPYSQ14117 519 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms