RNA–Protein interactions for RNA: ENST00000479656.5

APTX-223, Transcript of aprataxin, human

TSL 1 (best)

Gene APTX, Length 1,881 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
APTX-223	ENST00000479656	CARD16	Q5EG05	197 aa		11.31	□□□□□ -0.6
APTX-223	ENST00000479656	RALGPS1	Q5JS13	557 aa		11.31	□□□□□ -0.6
APTX-223	ENST00000479656	SPANXN3	Q5MJ09	141 aa		11.31	□□□□□ -0.6
APTX-223	ENST00000479656	PRPF38B	Q5VTL8	546 aa	Known RBP	11.31	□□□□□ -0.6
APTX-223	ENST00000479656	SFTPA1	Q8IWL2	248 aa		11.31	□□□□□ -0.6
APTX-223	ENST00000479656	PPHLN1	Q8NEY8	458 aa	Known RBP	11.31	□□□□□ -0.6
APTX-223	ENST00000479656	CHFR	Q96EP1	664 aa		11.31	□□□□□ -0.6
APTX-223	ENST00000479656	MYO19	Q96H55	970 aa		11.31	□□□□□ -0.6
APTX-223	ENST00000479656	SMIM14	Q96QK8	99 aa		11.31	□□□□□ -0.6
APTX-223	ENST00000479656	CEP44	Q9C0F1	390 aa		11.31	□□□□□ -0.6
APTX-223	ENST00000479656	BRD9	Q9H8M2	597 aa		11.31	□□□□□ -0.6
APTX-223	ENST00000479656	PPAN	Q9NQ55	473 aa	Known RBP	11.31	□□□□□ -0.6
APTX-223	ENST00000479656	IL1RAPL1	Q9NZN1	696 aa		11.31	□□□□□ -0.6
APTX-223	ENST00000479656	HECA	Q9UBI9	543 aa	Predicted RBP	11.31	□□□□□ -0.6
APTX-223	ENST00000479656	TCAF1	Q9Y4C2	921 aa		11.31	□□□□□ -0.6
APTX-223	ENST00000479656	FAM169A	Q9Y6X4	670 aa		11.31	□□□□□ -0.6
APTX-223	ENST00000479656	ZCWPW2	A0A1B0GU75	182 aa		11.3	□□□□□ -0.6
APTX-223	ENST00000479656	TBC1D3B	A6NDS4	549 aa		11.3	□□□□□ -0.6
APTX-223	ENST00000479656	ARNTL	O00327	626 aa		11.3	□□□□□ -0.6
APTX-223	ENST00000479656	RGS16	O15492	202 aa	Predicted RBP	11.3	□□□□□ -0.6
APTX-223	ENST00000479656	RNF40	O75150	1001 aa		11.3	□□□□□ -0.6
APTX-223	ENST00000479656	ALDH1A2	O94788	518 aa		11.3	□□□□□ -0.6
APTX-223	ENST00000479656	PIGN	O95427	931 aa		11.3	□□□□□ -0.6
APTX-223	ENST00000479656	ASL	P04424	464 aa		11.3	□□□□□ -0.6
APTX-223	ENST00000479656	FGF1	P05230	155 aa		11.3	□□□□□ -0.6
APTX-223	ENST00000479656	IVL	P07476	585 aa		11.3	□□□□□ -0.6
APTX-223	ENST00000479656	DLD	P09622	509 aa	Known RBP	11.3	□□□□□ -0.6
APTX-223	ENST00000479656	PIRT	P0C851	137 aa		11.3	□□□□□ -0.6
APTX-223	ENST00000479656	BCL2L1	Q07817	233 aa		11.3	□□□□□ -0.6
APTX-223	ENST00000479656	AAK1	Q2M2I8	961 aa		11.3	□□□□□ -0.6
APTX-223	ENST00000479656	ESRP1	Q6NXG1	681 aa	Known RBP	11.3	□□□□□ -0.6
APTX-223	ENST00000479656	DPY19L3	Q6ZPD9	716 aa		11.3	□□□□□ -0.6
APTX-223	ENST00000479656		Q6ZVU0	165 aa		11.3	□□□□□ -0.6
APTX-223	ENST00000479656	CYS1	Q717R9	158 aa		11.3	□□□□□ -0.6
APTX-223	ENST00000479656	CROCCP2	Q86T23	111 aa		11.3	□□□□□ -0.6
APTX-223	ENST00000479656	CTAGE3P	Q8IX95	158 aa		11.3	□□□□□ -0.6
APTX-223	ENST00000479656	CYP4X1	Q8N118	509 aa		11.3	□□□□□ -0.6
APTX-223	ENST00000479656	KRT222	Q8N1A0	295 aa		11.3	□□□□□ -0.6
APTX-223	ENST00000479656	PHTF2	Q8N3S3	785 aa		11.3	□□□□□ -0.6
APTX-223	ENST00000479656	PCDH20	Q8N6Y1	951 aa	Known RBP	11.3	□□□□□ -0.6
APTX-223	ENST00000479656	SERBP1	Q8NC51	408 aa	Known RBP eCLIP	11.3	□□□□□ -0.6
APTX-223	ENST00000479656	LPCAT1	Q8NF37	534 aa		11.3	□□□□□ -0.6
APTX-223	ENST00000479656	BLOC1S5	Q8TDH9	187 aa		11.3	□□□□□ -0.6
APTX-223	ENST00000479656	ATP6V1G3	Q96LB4	118 aa		11.3	□□□□□ -0.6
APTX-223	ENST00000479656	MTG2	Q9H4K7	406 aa		11.3	□□□□□ -0.6
APTX-223	ENST00000479656	VPS18	Q9P253	973 aa		11.3	□□□□□ -0.6
APTX-223	ENST00000479656	NOVA2	Q9UNW9	492 aa	Known RBP	11.3	□□□□□ -0.6
APTX-223	ENST00000479656	PCDHB9	Q9Y5E1	797 aa		11.3	□□□□□ -0.6
APTX-223	ENST00000479656	LOC107983988	A0A1B0GUW6	1196 aa	Predicted RBP	11.29	□□□□□ -0.6
APTX-223	ENST00000479656	FOXO6	A8MYZ6	492 aa		11.29	□□□□□ -0.6
APTX-223	ENST00000479656	ANKRD66	B4E2M5	251 aa		11.29	□□□□□ -0.6
APTX-223	ENST00000479656	FZD6	O60353	706 aa		11.29	□□□□□ -0.6
APTX-223	ENST00000479656	GSR	P00390	522 aa		11.29	□□□□□ -0.6
APTX-223	ENST00000479656	SRPRA	P08240	638 aa	Known RBP	11.29	□□□□□ -0.6
APTX-223	ENST00000479656	ERVK-10	P10266	1014 aa		11.29	□□□□□ -0.6
APTX-223	ENST00000479656	BMP1	P13497	986 aa		11.29	□□□□□ -0.6
APTX-223	ENST00000479656	ALAD	P13716	330 aa		11.29	□□□□□ -0.6
APTX-223	ENST00000479656	MSH2	P43246	934 aa		11.29	□□□□□ -0.6
APTX-223	ENST00000479656	SOX9	P48436	509 aa		11.29	□□□□□ -0.6
APTX-223	ENST00000479656	CCNH	P51946	323 aa	Predicted RBP	11.29	□□□□□ -0.6
APTX-223	ENST00000479656	SMAD4	Q13485	552 aa	Known RBP	11.29	□□□□□ -0.6
APTX-223	ENST00000479656	PTPRR	Q15256	657 aa		11.29	□□□□□ -0.6
APTX-223	ENST00000479656	PPM1N	Q8N819	430 aa		11.29	□□□□□ -0.6
APTX-223	ENST00000479656	TERB1	Q8NA31	727 aa		11.29	□□□□□ -0.6
APTX-223	ENST00000479656	CHST14	Q8NCH0	376 aa		11.29	□□□□□ -0.6
APTX-223	ENST00000479656	FRS2	Q8WU20	508 aa		11.29	□□□□□ -0.6
APTX-223	ENST00000479656	VOPP1	Q96AW1	172 aa		11.29	□□□□□ -0.6
APTX-223	ENST00000479656	PGM2	Q96G03	612 aa		11.29	□□□□□ -0.6
APTX-223	ENST00000479656	RANBP9	Q96S59	729 aa		11.29	□□□□□ -0.6
APTX-223	ENST00000479656	PAFAH2	Q99487	392 aa		11.29	□□□□□ -0.6
APTX-223	ENST00000479656	ADGRE3	Q9BY15	652 aa		11.29	□□□□□ -0.6
APTX-223	ENST00000479656	FBRSL1	Q9HCM7	1045 aa	Known RBP	11.29	□□□□□ -0.6
APTX-223	ENST00000479656	LIMD1	Q9UGP4	676 aa		11.29	□□□□□ -0.6
APTX-223	ENST00000479656	SLC2A6	Q9UGQ3	507 aa		11.29	□□□□□ -0.6
APTX-223	ENST00000479656	SLC24A2	Q9UI40	661 aa		11.29	□□□□□ -0.6
APTX-223	ENST00000479656	PLA2G4C	Q9UP65	541 aa		11.29	□□□□□ -0.6
APTX-223	ENST00000479656	KCTD3	Q9Y597	815 aa		11.29	□□□□□ -0.6
APTX-223	ENST00000479656	KIF26A	Q9ULI4	1882 aa	Predicted RBP	11.29	□□□□□ -0.6
APTX-223	ENST00000479656	EYS	Q5T1H1	3165 aa		11.29	□□□□□ -0.6
APTX-223	ENST00000479656	MIA3	Q5JRA6	1907 aa		11.29	□□□□□ -0.6
APTX-223	ENST00000479656	HEATR9	A2RTY3	570 aa		11.29	□□□□□ -0.6
APTX-223	ENST00000479656	ANTXRL	A6NF34	631 aa		11.29	□□□□□ -0.6
APTX-223	ENST00000479656	FAM159B	A6NKW6	160 aa		11.29	□□□□□ -0.6
APTX-223	ENST00000479656	TRAFD1	O14545	582 aa	Predicted RBP	11.29	□□□□□ -0.6
APTX-223	ENST00000479656	TIMM44	O43615	452 aa		11.29	□□□□□ -0.6
APTX-223	ENST00000479656	UGT1A9	O60656	530 aa		11.29	□□□□□ -0.6
APTX-223	ENST00000479656	CDH16	O75309	829 aa		11.29	□□□□□ -0.6
APTX-223	ENST00000479656	FAM155B	O75949	473 aa		11.29	□□□□□ -0.6
APTX-223	ENST00000479656	POP4	O95707	220 aa	Known RBP	11.29	□□□□□ -0.6
APTX-223	ENST00000479656	FOSL2	P15408	326 aa		11.29	□□□□□ -0.6
APTX-223	ENST00000479656	CA4	P22748	312 aa		11.29	□□□□□ -0.6
APTX-223	ENST00000479656	MAPK8	P45983	427 aa		11.29	□□□□□ -0.6
APTX-223	ENST00000479656	ST8SIA6	P61647	398 aa		11.29	□□□□□ -0.6
APTX-223	ENST00000479656	CNGA3	Q16281	694 aa		11.29	□□□□□ -0.6
APTX-223	ENST00000479656	QPCT	Q16769	361 aa		11.29	□□□□□ -0.6
APTX-223	ENST00000479656	ARMC12	Q5T9G4	340 aa		11.29	□□□□□ -0.6
APTX-223	ENST00000479656	AGBL2	Q5U5Z8	902 aa		11.29	□□□□□ -0.6
APTX-223	ENST00000479656	LRRC6	Q86X45	466 aa		11.29	□□□□□ -0.6
APTX-223	ENST00000479656	TDRP	Q86YL5	185 aa		11.29	□□□□□ -0.6
APTX-223	ENST00000479656	ZNF366	Q8N895	744 aa		11.29	□□□□□ -0.6

Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms