RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 SYT2Q8N9I0 419 aaPredicted RBP5.35□□□□□ -1.55
UPF3B-203ENST00000478840 POMGNT2Q8NAT1 580 aa5.35□□□□□ -1.55
UPF3B-203ENST00000478840 LARP4BQ92615 738 aaKnown RBP5.35□□□□□ -1.55
UPF3B-203ENST00000478840 MAP4K1Q92918 833 aa5.35□□□□□ -1.55
UPF3B-203ENST00000478840 SAT2Q96F10 170 aaPredicted RBP5.35□□□□□ -1.55
UPF3B-203ENST00000478840 TMEM68Q96MH6 324 aa5.35□□□□□ -1.55
UPF3B-203ENST00000478840 SEPT5Q99719 369 aaPredicted RBP5.35□□□□□ -1.55
UPF3B-203ENST00000478840 EDEM3Q9BZQ6 932 aa5.35□□□□□ -1.55
UPF3B-203ENST00000478840 NDST4Q9H3R1 872 aa5.35□□□□□ -1.55
UPF3B-203ENST00000478840 ERVMER34-1Q9H9K5 563 aa5.35□□□□□ -1.55
UPF3B-203ENST00000478840 WDR6Q9NNW5 1121 aaKnown RBP5.35□□□□□ -1.55
UPF3B-203ENST00000478840 LTB4R2Q9NPC1 389 aa5.35□□□□□ -1.55
UPF3B-203ENST00000478840 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP5.35□□□□□ -1.55
UPF3B-203ENST00000478840 IL17RBQ9NRM6 502 aa5.35□□□□□ -1.55
UPF3B-203ENST00000478840 ZNF112Q9UJU3 913 aa5.35□□□□□ -1.55
UPF3B-203ENST00000478840 PACSIN3Q9UKS6 424 aa5.35□□□□□ -1.55
UPF3B-203ENST00000478840 NENFQ9UMX5 172 aa5.35□□□□□ -1.55
UPF3B-203ENST00000478840 WNT6Q9Y6F9 365 aa5.35□□□□□ -1.55
UPF3B-203ENST00000478840 A0A096LPK6 155 aa5.34□□□□□ -1.55
UPF3B-203ENST00000478840 C2CD4BA6NLJ0 364 aa5.34□□□□□ -1.55
UPF3B-203ENST00000478840 HSPB2A8KAH6 182 aa5.34□□□□□ -1.55
UPF3B-203ENST00000478840 A8MV72 311 aaPredicted RBP5.34□□□□□ -1.55
UPF3B-203ENST00000478840 A8MXE2 369 aa5.34□□□□□ -1.55
UPF3B-203ENST00000478840 KLRF2D3W0D1 207 aa5.34□□□□□ -1.55
UPF3B-203ENST00000478840 HS6ST1O60243 411 aa5.34□□□□□ -1.55
UPF3B-203ENST00000478840 TOP3BO95985 862 aaKnown RBP5.34□□□□□ -1.55
UPF3B-203ENST00000478840 UNGP13051 313 aaPredicted RBP5.34□□□□□ -1.55
UPF3B-203ENST00000478840 KRT10P13645 584 aa5.34□□□□□ -1.55
UPF3B-203ENST00000478840 ZNF182P17025 639 aaPredicted RBP5.34□□□□□ -1.55
UPF3B-203ENST00000478840 TMEM11P17152 192 aa5.34□□□□□ -1.55
UPF3B-203ENST00000478840 ITGAXP20702 1163 aa5.34□□□□□ -1.55
UPF3B-203ENST00000478840 PON1P27169 355 aa5.34□□□□□ -1.55
UPF3B-203ENST00000478840 EPHB2P29323 1055 aa5.34□□□□□ -1.55
UPF3B-203ENST00000478840 EEF1DP29692 281 aaKnown RBP5.34□□□□□ -1.55
UPF3B-203ENST00000478840 LMAN1P49257 510 aa5.34□□□□□ -1.55
UPF3B-203ENST00000478840 CAMPP49913 170 aa5.34□□□□□ -1.55
UPF3B-203ENST00000478840 PPP5CP53041 499 aa5.34□□□□□ -1.55
UPF3B-203ENST00000478840 MFAP4P55083 255 aa5.34□□□□□ -1.55
UPF3B-203ENST00000478840 GRIK3Q13003 919 aa5.34□□□□□ -1.55
UPF3B-203ENST00000478840 PRPF4BQ13523 1007 aaKnown RBP5.34□□□□□ -1.55
UPF3B-203ENST00000478840 HSPB2Q16082 182 aa5.34□□□□□ -1.55
UPF3B-203ENST00000478840 C15orf59Q2T9L4 293 aaPredicted RBP5.34□□□□□ -1.55
UPF3B-203ENST00000478840 COL28A1Q2UY09 1125 aa5.34□□□□□ -1.55
UPF3B-203ENST00000478840 USP41Q3LFD5 358 aa5.34□□□□□ -1.55
UPF3B-203ENST00000478840 TTC39AQ5SRH9 613 aa5.34□□□□□ -1.55
UPF3B-203ENST00000478840 C6orf141Q5SZD1 244 aa5.34□□□□□ -1.55
UPF3B-203ENST00000478840 SUMO4Q6EEV6 95 aa5.34□□□□□ -1.55
UPF3B-203ENST00000478840 NCAPH2Q6IBW4 605 aa5.34□□□□□ -1.55
UPF3B-203ENST00000478840 DENND5BQ6ZUT9 1274 aa5.34□□□□□ -1.55
UPF3B-203ENST00000478840 ZNF627Q7L945 461 aa5.34□□□□□ -1.55
UPF3B-203ENST00000478840 AMIGO2Q86SJ2 522 aa5.34□□□□□ -1.55
UPF3B-203ENST00000478840 SERPINA11Q86U17 422 aa5.34□□□□□ -1.55
UPF3B-203ENST00000478840 TDRPQ86YL5 185 aa5.34□□□□□ -1.55
UPF3B-203ENST00000478840 PNLDC1Q8NA58 520 aaKnown RBP5.34□□□□□ -1.55
UPF3B-203ENST00000478840 AVL9Q8NBF6 648 aa5.34□□□□□ -1.55
UPF3B-203ENST00000478840 POGLUT1Q8NBL1 392 aa5.34□□□□□ -1.55
UPF3B-203ENST00000478840 GABPB2Q8TAK5 448 aaPredicted RBP5.34□□□□□ -1.55
UPF3B-203ENST00000478840 EFHD1Q9BUP0 239 aa5.34□□□□□ -1.55
UPF3B-203ENST00000478840 DUSP26Q9BV47 211 aa5.34□□□□□ -1.55
UPF3B-203ENST00000478840 APOL6Q9BWW8 343 aa5.34□□□□□ -1.55
UPF3B-203ENST00000478840 RANGRFQ9HD47 186 aaPredicted RBP5.34□□□□□ -1.55
UPF3B-203ENST00000478840 ARPP21Q9UBL0 812 aaPredicted RBP5.34□□□□□ -1.55
UPF3B-203ENST00000478840 CTNNAL1Q9UBT7 734 aa5.34□□□□□ -1.55
UPF3B-203ENST00000478840 SEL1LQ9UBV2 794 aa5.34□□□□□ -1.55
UPF3B-203ENST00000478840 PADI1Q9ULC6 663 aa5.34□□□□□ -1.55
UPF3B-203ENST00000478840 TSPY2A6NKD2 308 aa5.33□□□□□ -1.56
UPF3B-203ENST00000478840 PRRG2O14669 202 aa5.33□□□□□ -1.56
UPF3B-203ENST00000478840 KLK8O60259 260 aa5.33□□□□□ -1.56
UPF3B-203ENST00000478840 HSPA4LO95757 839 aa5.33□□□□□ -1.56
UPF3B-203ENST00000478840 SRPRAP08240 638 aaKnown RBP5.33□□□□□ -1.56
UPF3B-203ENST00000478840 TSPY3P0CV98 308 aa5.33□□□□□ -1.56
UPF3B-203ENST00000478840 TSPY8P0CW00 308 aa5.33□□□□□ -1.56
UPF3B-203ENST00000478840 VDRP11473 427 aa5.33□□□□□ -1.56
UPF3B-203ENST00000478840 AGAP20933 346 aa5.33□□□□□ -1.56
UPF3B-203ENST00000478840 BMP5P22003 454 aa5.33□□□□□ -1.56
UPF3B-203ENST00000478840 SHMT1P34896 483 aa5.33□□□□□ -1.56
UPF3B-203ENST00000478840 PNLIPRP2P54317 469 aa5.33□□□□□ -1.56
UPF3B-203ENST00000478840 RAD23AP54725 363 aa5.33□□□□□ -1.56
UPF3B-203ENST00000478840 TUBA4AP68366 448 aa5.33□□□□□ -1.56
UPF3B-203ENST00000478840 TSPY1Q01534 308 aa5.33□□□□□ -1.56
UPF3B-203ENST00000478840 TFAP4Q01664 338 aa5.33□□□□□ -1.56
UPF3B-203ENST00000478840 PMPCAQ10713 525 aa5.33□□□□□ -1.56
UPF3B-203ENST00000478840 PLCB4Q15147 1175 aa5.33□□□□□ -1.56
UPF3B-203ENST00000478840 TCTN1Q2MV58 587 aa5.33□□□□□ -1.56
UPF3B-203ENST00000478840 PLEKHO1Q53GL0 409 aaPredicted RBP5.33□□□□□ -1.56
UPF3B-203ENST00000478840 AKNAD1Q5T1N1 836 aa5.33□□□□□ -1.56
UPF3B-203ENST00000478840 ERMARDQ5T6L9 678 aa5.33□□□□□ -1.56
UPF3B-203ENST00000478840 PRAMEF17Q5VTA0 474 aa5.33□□□□□ -1.56
UPF3B-203ENST00000478840 KRT79Q5XKE5 535 aa5.33□□□□□ -1.56
UPF3B-203ENST00000478840 ADALQ6DHV7 355 aa5.33□□□□□ -1.56
UPF3B-203ENST00000478840 SEPT14Q6ZU15 432 aa5.33□□□□□ -1.56
UPF3B-203ENST00000478840 KDELC2Q7Z4H8 507 aa5.33□□□□□ -1.56
UPF3B-203ENST00000478840 DDIASQ8IXT1 998 aa5.33□□□□□ -1.56
UPF3B-203ENST00000478840 FAM185AQ8N0U4 392 aa5.33□□□□□ -1.56
UPF3B-203ENST00000478840 TDRD5Q8NAT2 981 aaKnown RBP5.33□□□□□ -1.56
UPF3B-203ENST00000478840 C8orf58Q8NAV2 365 aa5.33□□□□□ -1.56
UPF3B-203ENST00000478840 OSR1Q8TAX0 266 aaPredicted RBP5.33□□□□□ -1.56
UPF3B-203ENST00000478840 ATOH1Q92858 354 aaPredicted RBP5.33□□□□□ -1.56
UPF3B-203ENST00000478840 ZKSCAN4Q969J2 545 aaPredicted RBP5.33□□□□□ -1.56
UPF3B-203ENST00000478840 LRRC59Q96AG4 307 aaKnown RBP5.33□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms