RNA–Protein interactions for RNA: ENST00000473924.1

DDX56-209, Transcript of DEAD-box helicase 56, humanhuman

TSL 5

Gene DDX56, Length 385 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-209ENST00000473924 RABEPKQ7Z6M1 372 aa12.52□□□□□ -0.41
DDX56-209ENST00000473924 PRPF39Q86UA1 669 aaKnown RBP12.52□□□□□ -0.41
DDX56-209ENST00000473924 SLC13A5Q86YT5 568 aaPredicted RBP12.52□□□□□ -0.41
DDX56-209ENST00000473924 DCLK2Q8N568 766 aa12.52□□□□□ -0.41
DDX56-209ENST00000473924 CNTD1Q8N815 330 aa12.52□□□□□ -0.41
DDX56-209ENST00000473924 MAIP1Q8WWC4 291 aa12.52□□□□□ -0.41
DDX56-209ENST00000473924 FEM1CQ96JP0 617 aa12.52□□□□□ -0.41
DDX56-209ENST00000473924 VAT1Q99536 393 aa12.52□□□□□ -0.41
DDX56-209ENST00000473924 C10orf88Q9H8K7 445 aa12.52□□□□□ -0.41
DDX56-209ENST00000473924 VPS45Q9NRW7 570 aa12.52□□□□□ -0.41
DDX56-209ENST00000473924 TMEM74BQ9NUR3 256 aa12.52□□□□□ -0.41
DDX56-209ENST00000473924 SUSD2Q9UGT4 822 aa12.52□□□□□ -0.41
DDX56-209ENST00000473924 ITM2BQ9Y287 266 aa12.52□□□□□ -0.41
DDX56-209ENST00000473924 PCDHB9Q9Y5E1 797 aa12.52□□□□□ -0.41
DDX56-209ENST00000473924 RAI2Q9Y5P3 530 aa12.52□□□□□ -0.41
DDX56-209ENST00000473924 FADS3Q9Y5Q0 445 aa12.52□□□□□ -0.41
DDX56-209ENST00000473924 ANKRD36A6QL64 1941 aa12.52□□□□□ -0.41
DDX56-209ENST00000473924 SDK1Q7Z5N4 2213 aa12.52□□□□□ -0.41
DDX56-209ENST00000473924 A0A1W2PQU0 124 aa12.51□□□□□ -0.41
DDX56-209ENST00000473924 TSPAN11A1L157 253 aa12.51□□□□□ -0.41
DDX56-209ENST00000473924 KCNN4O15554 427 aa12.51□□□□□ -0.41
DDX56-209ENST00000473924 LRP3O75074 770 aa12.51□□□□□ -0.41
DDX56-209ENST00000473924 CPP00450 1065 aa12.51□□□□□ -0.41
DDX56-209ENST00000473924 FGGP02679 453 aa12.51□□□□□ -0.41
DDX56-209ENST00000473924 ATP1A1P05023 1023 aaKnown RBP12.51□□□□□ -0.41
DDX56-209ENST00000473924 CFIP05156 583 aa12.51□□□□□ -0.41
DDX56-209ENST00000473924 IGHV4-34P06331 123 aa12.51□□□□□ -0.41
DDX56-209ENST00000473924 NFKBIAP25963 317 aa12.51□□□□□ -0.41
DDX56-209ENST00000473924 CD27P26842 260 aa12.51□□□□□ -0.41
DDX56-209ENST00000473924 HOXD12P35452 270 aa12.51□□□□□ -0.41
DDX56-209ENST00000473924 CD86P42081 329 aa12.51□□□□□ -0.41
DDX56-209ENST00000473924 EPHB1P54762 984 aa12.51□□□□□ -0.41
DDX56-209ENST00000473924 RPS21P63220 83 aaKnown RBP12.51□□□□□ -0.41
DDX56-209ENST00000473924 NIPAL4Q0D2K0 466 aa12.51□□□□□ -0.41
DDX56-209ENST00000473924 WASHC5Q12768 1159 aa12.51□□□□□ -0.41
DDX56-209ENST00000473924 TRAF2Q12933 501 aa12.51□□□□□ -0.41
DDX56-209ENST00000473924 LONRF2Q1L5Z9 754 aa12.51□□□□□ -0.41
DDX56-209ENST00000473924 SETMARQ53H47 684 aaPredicted RBP12.51□□□□□ -0.41
DDX56-209ENST00000473924 FAM182AQ5T1J6 154 aa12.51□□□□□ -0.41
DDX56-209ENST00000473924 KIAA1161Q6NSJ0 714 aa12.51□□□□□ -0.41
DDX56-209ENST00000473924 TRIM69Q86WT6 500 aa12.51□□□□□ -0.41
DDX56-209ENST00000473924 HORMAD1Q86X24 394 aa12.51□□□□□ -0.41
DDX56-209ENST00000473924 ZSWIM9Q86XI8 627 aa12.51□□□□□ -0.41
DDX56-209ENST00000473924 NDUFAF2Q8N183 169 aa12.51□□□□□ -0.41
DDX56-209ENST00000473924 ZCCHC9Q8N567 271 aaKnown RBP12.51□□□□□ -0.41
DDX56-209ENST00000473924 CEP76Q8TAP6 659 aa12.51□□□□□ -0.41
DDX56-209ENST00000473924 ARRDC2Q8TBH0 407 aa12.51□□□□□ -0.41
DDX56-209ENST00000473924 CXorf40AQ8TE69 158 aa12.51□□□□□ -0.41
DDX56-209ENST00000473924 DNASE2BQ8WZ79 361 aa12.51□□□□□ -0.41
DDX56-209ENST00000473924 KLK6Q92876 244 aa12.51□□□□□ -0.41
DDX56-209ENST00000473924 ECHDC3Q96DC8 303 aa12.51□□□□□ -0.41
DDX56-209ENST00000473924 PBKQ96KB5 322 aa12.51□□□□□ -0.41
DDX56-209ENST00000473924 TEKT5Q96M29 485 aa12.51□□□□□ -0.41
DDX56-209ENST00000473924 NSMCE3Q96MG7 304 aa12.51□□□□□ -0.41
DDX56-209ENST00000473924 RBM15Q96T37 977 aaKnown RBP eCLIP12.51□□□□□ -0.41
DDX56-209ENST00000473924 SLC25A51Q9H1U9 297 aa12.51□□□□□ -0.41
DDX56-209ENST00000473924 GLOD4Q9HC38 313 aa12.51□□□□□ -0.41
DDX56-209ENST00000473924 PCDH12Q9NPG4 1184 aa12.51□□□□□ -0.41
DDX56-209ENST00000473924 GGT7Q9UJ14 662 aa12.51□□□□□ -0.41
DDX56-209ENST00000473924 PILRBQ9UKJ0 227 aa12.51□□□□□ -0.41
DDX56-209ENST00000473924 TRHDEQ9UKU6 1024 aa12.51□□□□□ -0.41
DDX56-209ENST00000473924 R3HDM2Q9Y2K5 976 aaKnown RBP12.51□□□□□ -0.41
DDX56-209ENST00000473924 A0A1B0GTW7 788 aa12.5□□□□□ -0.41
DDX56-209ENST00000473924 A0A1W2PPC4 97 aa12.5□□□□□ -0.41
DDX56-209ENST00000473924 PRR5-ARHGAP8B1AHC4 643 aa12.5□□□□□ -0.41
DDX56-209ENST00000473924 RIOK3O14730 519 aaKnown RBP12.5□□□□□ -0.41
DDX56-209ENST00000473924 AREL1O15033 823 aa12.5□□□□□ -0.41
DDX56-209ENST00000473924 KHNYNO15037 678 aaKnown RBP12.5□□□□□ -0.41
DDX56-209ENST00000473924 HTRA2O43464 458 aaPredicted RBP12.5□□□□□ -0.41
DDX56-209ENST00000473924 PGLSO95336 258 aa12.5□□□□□ -0.41
DDX56-209ENST00000473924 PRKCGP05129 697 aa12.5□□□□□ -0.41
DDX56-209ENST00000473924 ITIH2P19823 946 aa12.5□□□□□ -0.41
DDX56-209ENST00000473924 NUDT1P36639 197 aa12.5□□□□□ -0.41
DDX56-209ENST00000473924 TNNT3P45378 269 aaPredicted RBP12.5□□□□□ -0.41
DDX56-209ENST00000473924 SGCGQ13326 291 aa12.5□□□□□ -0.41
DDX56-209ENST00000473924 DUOXA1Q1HG43 343 aa12.5□□□□□ -0.41
DDX56-209ENST00000473924 SEL1L3Q68CR1 1132 aa12.5□□□□□ -0.41
DDX56-209ENST00000473924 ITPRIPL1Q6GPH6 555 aa12.5□□□□□ -0.41
DDX56-209ENST00000473924 ALYREFQ86V81 257 aaKnown RBP12.5□□□□□ -0.41
DDX56-209ENST00000473924 ZSCAN30Q86W11 494 aa12.5□□□□□ -0.41
DDX56-209ENST00000473924 ZNF567Q8N184 647 aa12.5□□□□□ -0.41
DDX56-209ENST00000473924 GPR161Q8N6U8 529 aaKnown RBP12.5□□□□□ -0.41
DDX56-209ENST00000473924 C12orf50Q8NA57 414 aaPredicted RBP12.5□□□□□ -0.41
DDX56-209ENST00000473924 C1orf54Q8WWF1 131 aa12.5□□□□□ -0.41
DDX56-209ENST00000473924 ATG4AQ8WYN0 398 aa12.5□□□□□ -0.41
DDX56-209ENST00000473924 TRIM44Q96DX7 344 aaPredicted RBP12.5□□□□□ -0.41
DDX56-209ENST00000473924 IMP4Q96G21 291 aaKnown RBP12.5□□□□□ -0.41
DDX56-209ENST00000473924 SERAC1Q96JX3 654 aa12.5□□□□□ -0.41
DDX56-209ENST00000473924 WRAP53Q9BUR4 548 aaKnown RBP12.5□□□□□ -0.41
DDX56-209ENST00000473924 NUSAP1Q9BXS6 441 aaKnown RBP12.5□□□□□ -0.41
DDX56-209ENST00000473924 FRMD8P1Q9BZ68 369 aaPredicted RBP12.5□□□□□ -0.41
DDX56-209ENST00000473924 SMOC1Q9H4F8 434 aa12.5□□□□□ -0.41
DDX56-209ENST00000473924 AASDHPPTQ9NRN7 309 aa12.5□□□□□ -0.41
DDX56-209ENST00000473924 SEMA4GQ9NTN9 838 aa12.5□□□□□ -0.41
DDX56-209ENST00000473924 RSPH14Q9UHP6 348 aa12.5□□□□□ -0.41
DDX56-209ENST00000473924 DNPEPQ9ULA0 475 aa12.5□□□□□ -0.41
DDX56-209ENST00000473924 PHTF1Q9UMS5 762 aa12.5□□□□□ -0.41
DDX56-209ENST00000473924 CHKBQ9Y259 395 aa12.5□□□□□ -0.41
DDX56-209ENST00000473924 TNRC6BQ9UPQ9 1833 aaKnown RBP12.5□□□□□ -0.41
DDX56-209ENST00000473924 VPS13AQ96RL7 3174 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms