RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	PCSK5	Q92824	1860 aa		4	□□□□□ -1.77
PTCD3-209	ENST00000472044	TYW5	A2RUC4	315 aa	Known RBP	3.99	□□□□□ -1.77
PTCD3-209	ENST00000472044	WDR91	A4D1P6	747 aa		3.99	□□□□□ -1.77
PTCD3-209	ENST00000472044	CHL1	O00533	1208 aa		3.99	□□□□□ -1.77
PTCD3-209	ENST00000472044	SOCS2	O14508	198 aa		3.99	□□□□□ -1.77
PTCD3-209	ENST00000472044	SEC14L5	O43304	696 aa		3.99	□□□□□ -1.77
PTCD3-209	ENST00000472044	PTP4A3	O75365	173 aa		3.99	□□□□□ -1.77
PTCD3-209	ENST00000472044	SEC31A	O94979	1220 aa	Known RBP	3.99	□□□□□ -1.77
PTCD3-209	ENST00000472044	AGA	P20933	346 aa		3.99	□□□□□ -1.77
PTCD3-209	ENST00000472044	MYF6	P23409	242 aa		3.99	□□□□□ -1.77
PTCD3-209	ENST00000472044	MAPK4	P31152	587 aa		3.99	□□□□□ -1.77
PTCD3-209	ENST00000472044	ZP1	P60852	638 aa		3.99	□□□□□ -1.77
PTCD3-209	ENST00000472044	ARF3	P61204	181 aa	Predicted RBP	3.99	□□□□□ -1.77
PTCD3-209	ENST00000472044	ARF1	P84077	181 aa	Known RBP	3.99	□□□□□ -1.77
PTCD3-209	ENST00000472044	ADORA2A-AS1	P86434	159 aa		3.99	□□□□□ -1.77
PTCD3-209	ENST00000472044	OLIG2	Q13516	323 aa		3.99	□□□□□ -1.77
PTCD3-209	ENST00000472044	LAMB3	Q13751	1172 aa		3.99	□□□□□ -1.77
PTCD3-209	ENST00000472044	RUNX2	Q13950	521 aa		3.99	□□□□□ -1.77
PTCD3-209	ENST00000472044	PPP2R5B	Q15173	497 aa		3.99	□□□□□ -1.77
PTCD3-209	ENST00000472044	RABEP1	Q15276	862 aa		3.99	□□□□□ -1.77
PTCD3-209	ENST00000472044	ETFDH	Q16134	617 aa		3.99	□□□□□ -1.77
PTCD3-209	ENST00000472044	SOWAHA	Q2M3V2	549 aa		3.99	□□□□□ -1.77
PTCD3-209	ENST00000472044	SLC45A4	Q5BKX6	768 aa		3.99	□□□□□ -1.77
PTCD3-209	ENST00000472044	WASHC2D	Q5SRD0	308 aa		3.99	□□□□□ -1.77
PTCD3-209	ENST00000472044	DCAF12L2	Q5VW00	463 aa		3.99	□□□□□ -1.77
PTCD3-209	ENST00000472044	NUGGC	Q68CJ6	796 aa		3.99	□□□□□ -1.77
PTCD3-209	ENST00000472044	CFAP161	Q6P656	301 aa		3.99	□□□□□ -1.77
PTCD3-209	ENST00000472044	NCEH1	Q6PIU2	408 aa		3.99	□□□□□ -1.77
PTCD3-209	ENST00000472044	C1QL2	Q7Z5L3	287 aa		3.99	□□□□□ -1.77
PTCD3-209	ENST00000472044	DHX40	Q8IX18	779 aa	Known RBP	3.99	□□□□□ -1.77
PTCD3-209	ENST00000472044	TMEM116	Q8NCL8	245 aa		3.99	□□□□□ -1.77
PTCD3-209	ENST00000472044	GJC3	Q8NFK1	279 aa		3.99	□□□□□ -1.77
PTCD3-209	ENST00000472044	PSPC1	Q8WXF1	523 aa	Known RBP	3.99	□□□□□ -1.77
PTCD3-209	ENST00000472044	USP6NL	Q92738	828 aa		3.99	□□□□□ -1.77
PTCD3-209	ENST00000472044	OTULIN	Q96BN8	352 aa		3.99	□□□□□ -1.77
PTCD3-209	ENST00000472044	MXRA8	Q9BRK3	442 aa		3.99	□□□□□ -1.77
PTCD3-209	ENST00000472044	MSTO1	Q9BUK6	570 aa		3.99	□□□□□ -1.77
PTCD3-209	ENST00000472044	KRTAP9-8	Q9BYQ0	159 aa		3.99	□□□□□ -1.77
PTCD3-209	ENST00000472044	LHPP	Q9H008	270 aa		3.99	□□□□□ -1.77
PTCD3-209	ENST00000472044	HCFC1R1	Q9NWW0	138 aa		3.99	□□□□□ -1.77
PTCD3-209	ENST00000472044	EHD2	Q9NZN4	543 aa		3.99	□□□□□ -1.77
PTCD3-209	ENST00000472044	LIMA1	Q9UHB6	759 aa	Known RBP	3.99	□□□□□ -1.77
PTCD3-209	ENST00000472044	FBXO2	Q9UK22	296 aa	Predicted RBP	3.99	□□□□□ -1.77
PTCD3-209	ENST00000472044	FBXO9	Q9UK97	447 aa	Predicted RBP	3.99	□□□□□ -1.77
PTCD3-209	ENST00000472044	NFE2L3	Q9Y4A8	694 aa		3.99	□□□□□ -1.77
PTCD3-209	ENST00000472044	LYVE1	Q9Y5Y7	322 aa		3.99	□□□□□ -1.77
PTCD3-209	ENST00000472044	KCNE2	Q9Y6J6	123 aa		3.99	□□□□□ -1.77
PTCD3-209	ENST00000472044	A3GALT2	U3KPV4	340 aa		3.99	□□□□□ -1.77
PTCD3-209	ENST00000472044	KAT6B	Q8WYB5	2073 aa		3.98	□□□□□ -1.77
PTCD3-209	ENST00000472044		A0A1W2PQF6	199 aa		3.98	□□□□□ -1.77
PTCD3-209	ENST00000472044	LIPT2	A6NK58	231 aa		3.98	□□□□□ -1.77
PTCD3-209	ENST00000472044	LIAS	O43766	372 aa		3.98	□□□□□ -1.77
PTCD3-209	ENST00000472044	DOK2	O60496	412 aa		3.98	□□□□□ -1.77
PTCD3-209	ENST00000472044	SOX30	O94993	753 aa		3.98	□□□□□ -1.77
PTCD3-209	ENST00000472044	MLYCD	O95822	493 aa		3.98	□□□□□ -1.77
PTCD3-209	ENST00000472044	EIF2S1	P05198	315 aa	Known RBP	3.98	□□□□□ -1.77
PTCD3-209	ENST00000472044	ITGAX	P20702	1163 aa		3.98	□□□□□ -1.77
PTCD3-209	ENST00000472044	BDNF	P23560	247 aa		3.98	□□□□□ -1.77
PTCD3-209	ENST00000472044	CHAT	P28329	748 aa		3.98	□□□□□ -1.77
PTCD3-209	ENST00000472044	TM4SF1	P30408	202 aa		3.98	□□□□□ -1.77
PTCD3-209	ENST00000472044	MLH1	P40692	756 aa		3.98	□□□□□ -1.77
PTCD3-209	ENST00000472044	NR4A2	P43354	598 aa		3.98	□□□□□ -1.77
PTCD3-209	ENST00000472044	PIP4K2A	P48426	406 aa	Predicted RBP	3.98	□□□□□ -1.77
PTCD3-209	ENST00000472044	CLCN5	P51795	746 aa		3.98	□□□□□ -1.77
PTCD3-209	ENST00000472044	TMPRSS3	P57727	454 aa		3.98	□□□□□ -1.77
PTCD3-209	ENST00000472044	ST3GAL1	Q11201	340 aa		3.98	□□□□□ -1.77
PTCD3-209	ENST00000472044	CSTF3	Q12996	717 aa	Known RBP	3.98	□□□□□ -1.77
PTCD3-209	ENST00000472044	GRIK3	Q13003	919 aa		3.98	□□□□□ -1.77
PTCD3-209	ENST00000472044	PRKG2	Q13237	762 aa		3.98	□□□□□ -1.77
PTCD3-209	ENST00000472044	CAPS	Q13938	189 aa		3.98	□□□□□ -1.77
PTCD3-209	ENST00000472044	PTGR1	Q14914	329 aa		3.98	□□□□□ -1.77
PTCD3-209	ENST00000472044	KRT24	Q2M2I5	525 aa		3.98	□□□□□ -1.77
PTCD3-209	ENST00000472044	TCTN1	Q2MV58	587 aa		3.98	□□□□□ -1.77
PTCD3-209	ENST00000472044	DPCR1	Q3MIW9	517 aa		3.98	□□□□□ -1.77
PTCD3-209	ENST00000472044	ESCO2	Q56NI9	601 aa		3.98	□□□□□ -1.77
PTCD3-209	ENST00000472044	PRAMEF19	Q5SWL8	479 aa		3.98	□□□□□ -1.77
PTCD3-209	ENST00000472044	ZKSCAN2	Q63HK3	967 aa		3.98	□□□□□ -1.77
PTCD3-209	ENST00000472044	PLEKHA7	Q6IQ23	1121 aa		3.98	□□□□□ -1.77
PTCD3-209	ENST00000472044	ZNF425	Q6IV72	752 aa		3.98	□□□□□ -1.77
PTCD3-209	ENST00000472044	KLHL24	Q6TFL4	600 aa		3.98	□□□□□ -1.77
PTCD3-209	ENST00000472044	FASTKD5	Q7L8L6	764 aa	Known RBP	3.98	□□□□□ -1.77
PTCD3-209	ENST00000472044	GSTA5	Q7RTV2	222 aa		3.98	□□□□□ -1.77
PTCD3-209	ENST00000472044	LURAP1L	Q8IV03	231 aa		3.98	□□□□□ -1.77
PTCD3-209	ENST00000472044	SFTPA2	Q8IWL1	248 aa		3.98	□□□□□ -1.77
PTCD3-209	ENST00000472044	GTF3C6	Q969F1	213 aa		3.98	□□□□□ -1.77
PTCD3-209	ENST00000472044	SMARCE1	Q969G3	411 aa		3.98	□□□□□ -1.77
PTCD3-209	ENST00000472044	SLC25A28	Q96A46	364 aa		3.98	□□□□□ -1.77
PTCD3-209	ENST00000472044	FBXL8	Q96CD0	374 aa		3.98	□□□□□ -1.77
PTCD3-209	ENST00000472044	ZC3HAV1L	Q96H79	300 aa	Known RBP	3.98	□□□□□ -1.77
PTCD3-209	ENST00000472044	URB1-AS1	Q96HZ7	61 aa		3.98	□□□□□ -1.77
PTCD3-209	ENST00000472044	VCPIP1	Q96JH7	1222 aa		3.98	□□□□□ -1.77
PTCD3-209	ENST00000472044	NLRP4	Q96MN2	994 aa		3.98	□□□□□ -1.77
PTCD3-209	ENST00000472044	TIGD1	Q96MW7	591 aa		3.98	□□□□□ -1.77
PTCD3-209	ENST00000472044	SLITRK1	Q96PX8	696 aa		3.98	□□□□□ -1.77
PTCD3-209	ENST00000472044	BBS4	Q96RK4	519 aa		3.98	□□□□□ -1.77
PTCD3-209	ENST00000472044	GFM1	Q96RP9	751 aa	Known RBP	3.98	□□□□□ -1.77
PTCD3-209	ENST00000472044	SIN3A	Q96ST3	1273 aa		3.98	□□□□□ -1.77
PTCD3-209	ENST00000472044	POLDIP3	Q9BY77	421 aa	Known RBP	3.98	□□□□□ -1.77
PTCD3-209	ENST00000472044	FOXP1	Q9H334	677 aa	Predicted RBP	3.98	□□□□□ -1.77
PTCD3-209	ENST00000472044	FBRSL1	Q9HCM7	1045 aa	Known RBP	3.98	□□□□□ -1.77

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