RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 SLC25A51Q9H1U9 297 aa19.24■□□□□ 0.67
VIM-203ENST00000469543 MRPL46Q9H2W6 279 aaKnown RBP19.24■□□□□ 0.67
VIM-203ENST00000469543 EBF3Q9H4W6 596 aa19.24■□□□□ 0.67
VIM-203ENST00000469543 SP110Q9HB58 689 aa19.24■□□□□ 0.67
VIM-203ENST00000469543 CORO1CQ9ULV4 474 aaPredicted RBP19.24■□□□□ 0.67
VIM-203ENST00000469543 SCML2Q9UQR0 700 aa19.24■□□□□ 0.67
VIM-203ENST00000469543 A0A0D9SEW6 157 aa19.23■□□□□ 0.67
VIM-203ENST00000469543 ATP6AP2A0A1C7CYW4 349 aa19.23■□□□□ 0.67
VIM-203ENST00000469543 ATP6AP2O75787 350 aa19.23■□□□□ 0.67
VIM-203ENST00000469543 SLC4A1P02730 911 aa19.23■□□□□ 0.67
VIM-203ENST00000469543 ENO3P13929 434 aaPredicted RBP19.23■□□□□ 0.67
VIM-203ENST00000469543 RAG1P15918 1043 aa19.23■□□□□ 0.67
VIM-203ENST00000469543 KCNQ1P51787 676 aa19.23■□□□□ 0.67
VIM-203ENST00000469543 BTKQ06187 659 aa19.23■□□□□ 0.67
VIM-203ENST00000469543 NSUN2Q08J23 767 aaKnown RBP eCLIP19.23■□□□□ 0.67
VIM-203ENST00000469543 PRKAA1Q13131 559 aa19.23■□□□□ 0.67
VIM-203ENST00000469543 HNRNPDQ14103 355 aaKnown RBP19.23■□□□□ 0.67
VIM-203ENST00000469543 SFT2D3Q587I9 215 aa19.23■□□□□ 0.67
VIM-203ENST00000469543 FBXO48Q5FWF7 155 aa19.23■□□□□ 0.67
VIM-203ENST00000469543 TBATAQ96M53 351 aa19.23■□□□□ 0.67
VIM-203ENST00000469543 UBE2OQ9C0C9 1292 aaKnown RBP19.23■□□□□ 0.67
VIM-203ENST00000469543 GPAMQ9HCL2 828 aa19.23■□□□□ 0.67
VIM-203ENST00000469543 PRDM5Q9NQX1 630 aaPredicted RBP19.23■□□□□ 0.67
VIM-203ENST00000469543 RGS18Q9NS28 235 aa19.23■□□□□ 0.67
VIM-203ENST00000469543 COL4A4P53420 1690 aaPredicted RBP19.23■□□□□ 0.67
VIM-203ENST00000469543 PPP6CO00743 305 aa19.23■□□□□ 0.67
VIM-203ENST00000469543 RENBPP51606 427 aa19.23■□□□□ 0.67
VIM-203ENST00000469543 MTTPP55157 894 aa19.23■□□□□ 0.67
VIM-203ENST00000469543 C1QTNF8P60827 252 aa19.23■□□□□ 0.67
VIM-203ENST00000469543 GALNT3Q14435 633 aa19.23■□□□□ 0.67
VIM-203ENST00000469543 GPR158Q5T848 1215 aa19.23■□□□□ 0.67
VIM-203ENST00000469543 TMCO4Q5TGY1 634 aa19.23■□□□□ 0.67
VIM-203ENST00000469543 SLC24A5Q71RS6 500 aa19.23■□□□□ 0.67
VIM-203ENST00000469543 UMODL1-AS1Q8N2C9 162 aa19.23■□□□□ 0.67
VIM-203ENST00000469543 FAM96AQ9H5X1 160 aa19.23■□□□□ 0.67
VIM-203ENST00000469543 NSMCE4AQ9NXX6 385 aa19.23■□□□□ 0.67
VIM-203ENST00000469543 COPG1Q9Y678 874 aaKnown RBP19.23■□□□□ 0.67
VIM-203ENST00000469543 A0A0U1RQS6 177 aa19.22■□□□□ 0.67
VIM-203ENST00000469543 EME2A4GXA9 379 aaPredicted RBP19.22■□□□□ 0.67
VIM-203ENST00000469543 AP3B1O00203 1094 aa19.22■□□□□ 0.67
VIM-203ENST00000469543 CA12O43570 354 aa19.22■□□□□ 0.67
VIM-203ENST00000469543 HADHAP40939 763 aa19.22■□□□□ 0.67
VIM-203ENST00000469543 THOP1P52888 689 aa19.22■□□□□ 0.67
VIM-203ENST00000469543 ACLYP53396 1101 aa19.22■□□□□ 0.67
VIM-203ENST00000469543 MS4A2Q01362 244 aa19.22■□□□□ 0.67
VIM-203ENST00000469543 MGAT5BQ3V5L5 792 aa19.22■□□□□ 0.67
VIM-203ENST00000469543 KIAA0930Q6ICG6 404 aaPredicted RBP19.22■□□□□ 0.67
VIM-203ENST00000469543 TMEM173Q86WV6 379 aaPredicted RBP19.22■□□□□ 0.67
VIM-203ENST00000469543 RYBPQ8N488 228 aaPredicted RBP19.22■□□□□ 0.67
VIM-203ENST00000469543 OR52K2Q8NGK3 314 aa19.22■□□□□ 0.67
VIM-203ENST00000469543 EXT2Q93063 718 aa19.22■□□□□ 0.67
VIM-203ENST00000469543 C1orf74Q96LT6 269 aa19.22■□□□□ 0.67
VIM-203ENST00000469543 UROC1Q96N76 676 aa19.22■□□□□ 0.67
VIM-203ENST00000469543 CYP2S1Q96SQ9 504 aa19.22■□□□□ 0.67
VIM-203ENST00000469543 ECSITQ9BQ95 431 aa19.22■□□□□ 0.67
VIM-203ENST00000469543 SLC12A8A0AV02 714 aa19.22■□□□□ 0.67
VIM-203ENST00000469543 RGSL1A5PLK6 1076 aa19.22■□□□□ 0.67
VIM-203ENST00000469543 APOA4P06727 396 aa19.22■□□□□ 0.67
VIM-203ENST00000469543 OR1E1P30953 314 aa19.22■□□□□ 0.67
VIM-203ENST00000469543 DSG1Q02413 1049 aa19.22■□□□□ 0.67
VIM-203ENST00000469543 METTL21CQ5VZV1 264 aa19.22■□□□□ 0.67
VIM-203ENST00000469543 CLEC6AQ6EIG7 209 aa19.22■□□□□ 0.67
VIM-203ENST00000469543 TRAF7Q6Q0C0 670 aa19.22■□□□□ 0.67
VIM-203ENST00000469543 DHDDSQ86SQ9 333 aa19.22■□□□□ 0.67
VIM-203ENST00000469543 ARRDC2Q8TBH0 407 aa19.22■□□□□ 0.67
VIM-203ENST00000469543 BLOC1S5Q8TDH9 187 aa19.22■□□□□ 0.67
VIM-203ENST00000469543 FBXO32Q969P5 355 aa19.22■□□□□ 0.67
VIM-203ENST00000469543 RTKNQ9BST9 563 aa19.22■□□□□ 0.67
VIM-203ENST00000469543 TRIM62Q9BVG3 475 aa19.22■□□□□ 0.67
VIM-203ENST00000469543 ALG9Q9H6U8 611 aa19.22■□□□□ 0.67
VIM-203ENST00000469543 SLC24A3Q9HC58 644 aa19.22■□□□□ 0.67
VIM-203ENST00000469543 ABT1Q9ULW3 272 aaKnown RBP19.22■□□□□ 0.67
VIM-203ENST00000469543 CDYLQ9Y232 598 aa19.22■□□□□ 0.67
VIM-203ENST00000469543 DOCK4Q8N1I0 1966 aa19.22■□□□□ 0.67
VIM-203ENST00000469543 CILP2Q8IUL8 1156 aa19.21■□□□□ 0.67
VIM-203ENST00000469543 EXOC2Q96KP1 924 aa19.21■□□□□ 0.67
VIM-203ENST00000469543 NSMCE3Q96MG7 304 aa19.21■□□□□ 0.67
VIM-203ENST00000469543 SEMA3CQ99985 751 aa19.21■□□□□ 0.67
VIM-203ENST00000469543 MARCH2Q9P0N8 246 aa19.21■□□□□ 0.67
VIM-203ENST00000469543 MIA3Q5JRA6 1907 aa19.21■□□□□ 0.67
VIM-203ENST00000469543 ANKRD12Q6UB98 2062 aa19.21■□□□□ 0.67
VIM-203ENST00000469543 TET1Q8NFU7 2136 aa19.21■□□□□ 0.67
VIM-203ENST00000469543 H3BNX3 289 aa19.21■□□□□ 0.67
VIM-203ENST00000469543 UBFD1O14562 309 aaKnown RBP19.21■□□□□ 0.67
VIM-203ENST00000469543 SCAMP3O14828 347 aaKnown RBP19.21■□□□□ 0.67
VIM-203ENST00000469543 XRCC1P18887 633 aaPredicted RBP19.21■□□□□ 0.67
VIM-203ENST00000469543 PAMP19021 973 aa19.21■□□□□ 0.67
VIM-203ENST00000469543 DNAJB2P25686 324 aa19.21■□□□□ 0.67
VIM-203ENST00000469543 CDH13P55290 713 aa19.21■□□□□ 0.67
VIM-203ENST00000469543 DUSP4Q13115 394 aa19.21■□□□□ 0.67
VIM-203ENST00000469543 CYLC2Q14093 348 aaPredicted RBP19.21■□□□□ 0.67
VIM-203ENST00000469543 POLD3Q15054 466 aaPredicted RBP19.21■□□□□ 0.67
VIM-203ENST00000469543 PTPRRQ15256 657 aa19.21■□□□□ 0.67
VIM-203ENST00000469543 RNF19BQ6ZMZ0 732 aa19.21■□□□□ 0.67
VIM-203ENST00000469543 TAS1R1Q7RTX1 841 aa19.21■□□□□ 0.67
VIM-203ENST00000469543 RDH11Q8TC12 318 aa19.21■□□□□ 0.67
VIM-203ENST00000469543 TMA16Q96EY4 203 aaKnown RBP19.21■□□□□ 0.67
VIM-203ENST00000469543 MRPL57Q9BQC6 102 aaKnown RBP19.21■□□□□ 0.67
VIM-203ENST00000469543 VWA8A3KMH1 1905 aa19.21■□□□□ 0.67
VIM-203ENST00000469543 HEATR9A2RTY3 570 aa19.2■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms