RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 ARSDP51689 593 aa9.01□□□□□ -0.97
SYNE1-217ENST00000466159 DSG1Q02413 1049 aa9.01□□□□□ -0.97
SYNE1-217ENST00000466159 NFE2Q16621 373 aaPredicted RBP9.01□□□□□ -0.97
SYNE1-217ENST00000466159 SH2D4BQ5SQS7 431 aa9.01□□□□□ -0.97
SYNE1-217ENST00000466159 FAM219BQ5XKK7 198 aa9.01□□□□□ -0.97
SYNE1-217ENST00000466159 PGBD5Q8N414 524 aa9.01□□□□□ -0.97
SYNE1-217ENST00000466159 C8orf48Q96LL4 319 aa9.01□□□□□ -0.97
SYNE1-217ENST00000466159 ECSITQ9BQ95 431 aa9.01□□□□□ -0.97
SYNE1-217ENST00000466159 ZNF385DQ9H6B1 395 aa9.01□□□□□ -0.97
SYNE1-217ENST00000466159 TMEM248Q9NWD8 314 aa9.01□□□□□ -0.97
SYNE1-217ENST00000466159 DLGAP2Q9P1A6 1054 aa9.01□□□□□ -0.97
SYNE1-217ENST00000466159 VTI1BQ9UEU0 232 aa9.01□□□□□ -0.97
SYNE1-217ENST00000466159 ADAMTS6Q9UKP5 1117 aa9.01□□□□□ -0.97
SYNE1-217ENST00000466159 FIS1Q9Y3D6 152 aa9.01□□□□□ -0.97
SYNE1-217ENST00000466159 MTF2Q9Y483 593 aaPredicted RBP9.01□□□□□ -0.97
SYNE1-217ENST00000466159 KCTD3Q9Y597 815 aa9.01□□□□□ -0.97
SYNE1-217ENST00000466159 FRMPD3Q5JV73 1810 aa9.01□□□□□ -0.97
SYNE1-217ENST00000466159 PLXNA3P51805 1871 aa9.01□□□□□ -0.97
SYNE1-217ENST00000466159 OR51F1A6NGY5 319 aa9.01□□□□□ -0.97
SYNE1-217ENST00000466159 EOMESO95936 686 aa9.01□□□□□ -0.97
SYNE1-217ENST00000466159 ARSAP15289 507 aa9.01□□□□□ -0.97
SYNE1-217ENST00000466159 PPARGP37231 505 aaPredicted RBP9.01□□□□□ -0.97
SYNE1-217ENST00000466159 LEPRP48357 1165 aaKnown RBP9.01□□□□□ -0.97
SYNE1-217ENST00000466159 PLK1P53350 603 aa9.01□□□□□ -0.97
SYNE1-217ENST00000466159 SREBF2Q12772 1141 aa9.01□□□□□ -0.97
SYNE1-217ENST00000466159 CDC16Q13042 620 aa9.01□□□□□ -0.97
SYNE1-217ENST00000466159 CTXN3Q4LDR2 81 aa9.01□□□□□ -0.97
SYNE1-217ENST00000466159 RASIP1Q5U651 963 aa9.01□□□□□ -0.97
SYNE1-217ENST00000466159 LPCAT4Q643R3 524 aa9.01□□□□□ -0.97
SYNE1-217ENST00000466159 TRAF7Q6Q0C0 670 aa9.01□□□□□ -0.97
SYNE1-217ENST00000466159 DHDDSQ86SQ9 333 aa9.01□□□□□ -0.97
SYNE1-217ENST00000466159 DSELQ8IZU8 1212 aa9.01□□□□□ -0.97
SYNE1-217ENST00000466159 PCSK9Q8NBP7 692 aaKnown RBP9.01□□□□□ -0.97
SYNE1-217ENST00000466159 OR6P1Q8NGX9 317 aa9.01□□□□□ -0.97
SYNE1-217ENST00000466159 SH3RF2Q8TEC5 729 aa9.01□□□□□ -0.97
SYNE1-217ENST00000466159 PDCD6IPQ8WUM4 868 aaKnown RBP9.01□□□□□ -0.97
SYNE1-217ENST00000466159 ANKRD49Q8WVL7 239 aa9.01□□□□□ -0.97
SYNE1-217ENST00000466159 RCN3Q96D15 328 aa9.01□□□□□ -0.97
SYNE1-217ENST00000466159 MYEOVQ96EZ4 313 aa9.01□□□□□ -0.97
SYNE1-217ENST00000466159 FUBP3Q96I24 572 aaKnown RBP eCLIP9.01□□□□□ -0.97
SYNE1-217ENST00000466159 TNFRSF12AQ9NP84 129 aa9.01□□□□□ -0.97
SYNE1-217ENST00000466159 CLIC5Q9NZA1 410 aa9.01□□□□□ -0.97
SYNE1-217ENST00000466159 NCKIPSDQ9NZQ3 722 aa9.01□□□□□ -0.97
SYNE1-217ENST00000466159 UXTQ9UBK9 157 aaPredicted RBP9.01□□□□□ -0.97
SYNE1-217ENST00000466159 PCDHB5Q9Y5E4 795 aa9.01□□□□□ -0.97
SYNE1-217ENST00000466159 SLCO1B7G3V0H7 640 aa9.01□□□□□ -0.97
SYNE1-217ENST00000466159 NPHS1O60500 1241 aa9.01□□□□□ -0.97
SYNE1-217ENST00000466159 CCDC166P0CW27 439 aa9.01□□□□□ -0.97
SYNE1-217ENST00000466159 ATP5F1P24539 256 aaPredicted RBP9.01□□□□□ -0.97
SYNE1-217ENST00000466159 CST5P28325 142 aaPredicted RBP9.01□□□□□ -0.97
SYNE1-217ENST00000466159 MSX2P35548 267 aaPredicted RBP9.01□□□□□ -0.97
SYNE1-217ENST00000466159 HK2P52789 917 aa9.01□□□□□ -0.97
SYNE1-217ENST00000466159 TAF10Q12962 218 aa9.01□□□□□ -0.97
SYNE1-217ENST00000466159 CYLC2Q14093 348 aaPredicted RBP9.01□□□□□ -0.97
SYNE1-217ENST00000466159 TECRLQ5HYJ1 363 aa9.01□□□□□ -0.97
SYNE1-217ENST00000466159 SIRPB2Q5JXA9 342 aa9.01□□□□□ -0.97
SYNE1-217ENST00000466159 C10orf120Q5SQS8 335 aa9.01□□□□□ -0.97
SYNE1-217ENST00000466159 FAM171A1Q5VUB5 890 aa9.01□□□□□ -0.97
SYNE1-217ENST00000466159 KIAA0408Q6ZU52 694 aa9.01□□□□□ -0.97
SYNE1-217ENST00000466159 ADGRG6Q86SQ4 1221 aa9.01□□□□□ -0.97
SYNE1-217ENST00000466159 CILP2Q8IUL8 1156 aa9.01□□□□□ -0.97
SYNE1-217ENST00000466159 CPSF7Q8N684 471 aaKnown RBP9.01□□□□□ -0.97
SYNE1-217ENST00000466159 KYQ8NBH2 561 aa9.01□□□□□ -0.97
SYNE1-217ENST00000466159 RP9Q8TA86 221 aaKnown RBP9.01□□□□□ -0.97
SYNE1-217ENST00000466159 ARRDC2Q8TBH0 407 aa9.01□□□□□ -0.97
SYNE1-217ENST00000466159 GATA6Q92908 595 aa9.01□□□□□ -0.97
SYNE1-217ENST00000466159 FBXO32Q969P5 355 aa9.01□□□□□ -0.97
SYNE1-217ENST00000466159 HDAC10Q969S8 669 aa9.01□□□□□ -0.97
SYNE1-217ENST00000466159 BTN2A3PQ96KV6 586 aa9.01□□□□□ -0.97
SYNE1-217ENST00000466159 FAM193BQ96PV7 902 aaPredicted RBP9.01□□□□□ -0.97
SYNE1-217ENST00000466159 CRISPLD1Q9H336 500 aa9.01□□□□□ -0.97
SYNE1-217ENST00000466159 VPS45Q9NRW7 570 aa9.01□□□□□ -0.97
SYNE1-217ENST00000466159 GTSE1Q9NYZ3 720 aa9.01□□□□□ -0.97
SYNE1-217ENST00000466159 FNIP2Q9P278 1114 aa9.01□□□□□ -0.97
SYNE1-217ENST00000466159 MARCH4Q9P2E8 410 aaPredicted RBP9.01□□□□□ -0.97
SYNE1-217ENST00000466159 IGLV3-10A0A075B6K4 115 aa9□□□□□ -0.97
SYNE1-217ENST00000466159 SLC12A8A0AV02 714 aa9□□□□□ -0.97
SYNE1-217ENST00000466159 TMEM189-UBE2V1I3L0A0 370 aa9□□□□□ -0.97
SYNE1-217ENST00000466159 SDHDO14521 159 aa9□□□□□ -0.97
SYNE1-217ENST00000466159 RAG1P15918 1043 aa9□□□□□ -0.97
SYNE1-217ENST00000466159 SP100P23497 879 aaPredicted RBP9□□□□□ -0.97
SYNE1-217ENST00000466159 YWHAQP27348 245 aa9□□□□□ -0.97
SYNE1-217ENST00000466159 ACVRL1P37023 503 aa9□□□□□ -0.97
SYNE1-217ENST00000466159 ACLYP53396 1101 aa9□□□□□ -0.97
SYNE1-217ENST00000466159 PTPRCAPQ14761 206 aa9□□□□□ -0.97
SYNE1-217ENST00000466159 POLD3Q15054 466 aaPredicted RBP9□□□□□ -0.97
SYNE1-217ENST00000466159 FAM83EQ2M2I3 478 aa9□□□□□ -0.97
SYNE1-217ENST00000466159 HECTD2Q5U5R9 776 aa9□□□□□ -0.97
SYNE1-217ENST00000466159 TMEM207Q6UWW9 146 aa9□□□□□ -0.97
SYNE1-217ENST00000466159 PIWIL4Q7Z3Z4 852 aaKnown RBP9□□□□□ -0.97
SYNE1-217ENST00000466159 KBTBD6Q86V97 674 aa9□□□□□ -0.97
SYNE1-217ENST00000466159 ARHGAP18Q8N392 663 aa9□□□□□ -0.97
SYNE1-217ENST00000466159 TEX26Q8N6G2 289 aa9□□□□□ -0.97
SYNE1-217ENST00000466159 ATP6V0D2Q8N8Y2 350 aa9□□□□□ -0.97
SYNE1-217ENST00000466159 CALML6Q8TD86 181 aa9□□□□□ -0.97
SYNE1-217ENST00000466159 JADE3Q92613 823 aa9□□□□□ -0.97
SYNE1-217ENST00000466159 PHF21BQ96EK2 531 aa9□□□□□ -0.97
SYNE1-217ENST00000466159 RPRD1AQ96P16 312 aaPredicted RBP9□□□□□ -0.97
SYNE1-217ENST00000466159 RANBP9Q96S59 729 aa9□□□□□ -0.97
SYNE1-217ENST00000466159 CDRT15Q96T59 188 aa9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms