RNA–Protein interactions for RNA: ENST00000465461.6

CUX1-207, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 502 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-207ENST00000465461 ATP13A3Q9H7F0 1226 aa11.77□□□□□ -0.53
CUX1-207ENST00000465461 PREBQ9HCU5 417 aa11.77□□□□□ -0.53
CUX1-207ENST00000465461 TM9SF3Q9HD45 589 aa11.77□□□□□ -0.53
CUX1-207ENST00000465461 ATP8A1Q9Y2Q0 1164 aa11.77□□□□□ -0.53
CUX1-207ENST00000465461 COQ6Q9Y2Z9 468 aa11.77□□□□□ -0.53
CUX1-207ENST00000465461 A0A1B0GTW7 788 aa11.76□□□□□ -0.53
CUX1-207ENST00000465461 A0A1B0GVT2 93 aa11.76□□□□□ -0.53
CUX1-207ENST00000465461 LNP1A1A4G5 178 aa11.76□□□□□ -0.53
CUX1-207ENST00000465461 IGLON5A6NGN9 336 aa11.76□□□□□ -0.53
CUX1-207ENST00000465461 USP27XA6NNY8 438 aa11.76□□□□□ -0.53
CUX1-207ENST00000465461 MIF4GDA9UHW6 222 aaKnown RBP11.76□□□□□ -0.53
CUX1-207ENST00000465461 H7C0C1 242 aa11.76□□□□□ -0.53
CUX1-207ENST00000465461 LATO43561 262 aa11.76□□□□□ -0.53
CUX1-207ENST00000465461 LRP3O75074 770 aa11.76□□□□□ -0.53
CUX1-207ENST00000465461 PAK4O96013 591 aaPredicted RBP11.76□□□□□ -0.53
CUX1-207ENST00000465461 PDHA1P08559 390 aa11.76□□□□□ -0.53
CUX1-207ENST00000465461 SERPINF2P08697 491 aa11.76□□□□□ -0.53
CUX1-207ENST00000465461 GNSP15586 552 aa11.76□□□□□ -0.53
CUX1-207ENST00000465461 ENGP17813 658 aa11.76□□□□□ -0.53
CUX1-207ENST00000465461 XPAP23025 273 aaPredicted RBP11.76□□□□□ -0.53
CUX1-207ENST00000465461 HSPA9P38646 679 aaKnown RBP11.76□□□□□ -0.53
CUX1-207ENST00000465461 MAPK8P45983 427 aa11.76□□□□□ -0.53
CUX1-207ENST00000465461 ATP5OP48047 213 aa11.76□□□□□ -0.53
CUX1-207ENST00000465461 NR2C2P49116 596 aa11.76□□□□□ -0.53
CUX1-207ENST00000465461 AP1S1P61966 158 aa11.76□□□□□ -0.53
CUX1-207ENST00000465461 OTUD4Q01804 1114 aaKnown RBP11.76□□□□□ -0.53
CUX1-207ENST00000465461 BNC1Q01954 994 aa11.76□□□□□ -0.53
CUX1-207ENST00000465461 CCDC15Q0P6D6 951 aa11.76□□□□□ -0.53
CUX1-207ENST00000465461 PRKD1Q15139 912 aaPredicted RBP11.76□□□□□ -0.53
CUX1-207ENST00000465461 UGP2Q16851 508 aa11.76□□□□□ -0.53
CUX1-207ENST00000465461 SLC23A3Q6PIS1 610 aa11.76□□□□□ -0.53
CUX1-207ENST00000465461 ADAT2Q7Z6V5 191 aaKnown RBP11.76□□□□□ -0.53
CUX1-207ENST00000465461 PRPF39Q86UA1 669 aaKnown RBP11.76□□□□□ -0.53
CUX1-207ENST00000465461 TRIM69Q86WT6 500 aa11.76□□□□□ -0.53
CUX1-207ENST00000465461 HORMAD1Q86X24 394 aa11.76□□□□□ -0.53
CUX1-207ENST00000465461 ACTL9Q8TC94 416 aa11.76□□□□□ -0.53
CUX1-207ENST00000465461 TFB1MQ8WVM0 346 aaKnown RBP11.76□□□□□ -0.53
CUX1-207ENST00000465461 ECHDC3Q96DC8 303 aa11.76□□□□□ -0.53
CUX1-207ENST00000465461 SERAC1Q96JX3 654 aa11.76□□□□□ -0.53
CUX1-207ENST00000465461 ZNF641Q96N77 438 aaPredicted RBP11.76□□□□□ -0.53
CUX1-207ENST00000465461 IL12RB2Q99665 862 aa11.76□□□□□ -0.53
CUX1-207ENST00000465461 POLR1EQ9GZS1 481 aaKnown RBP11.76□□□□□ -0.53
CUX1-207ENST00000465461 KDM4CQ9H3R0 1056 aa11.76□□□□□ -0.53
CUX1-207ENST00000465461 CAAP1Q9H8G2 361 aa11.76□□□□□ -0.53
CUX1-207ENST00000465461 CAPN10Q9HC96 672 aa11.76□□□□□ -0.53
CUX1-207ENST00000465461 PCDH12Q9NPG4 1184 aa11.76□□□□□ -0.53
CUX1-207ENST00000465461 AASDHPPTQ9NRN7 309 aa11.76□□□□□ -0.53
CUX1-207ENST00000465461 DKK3Q9UBP4 350 aa11.76□□□□□ -0.53
CUX1-207ENST00000465461 PYCARDQ9ULZ3 195 aa11.76□□□□□ -0.53
CUX1-207ENST00000465461 SLC6A14Q9UN76 642 aa11.76□□□□□ -0.53
CUX1-207ENST00000465461 PCDHB9Q9Y5E1 797 aa11.76□□□□□ -0.53
CUX1-207ENST00000465461 EP300Q09472 2414 aaPredicted RBP11.76□□□□□ -0.53
CUX1-207ENST00000465461 TSPAN11A1L157 253 aa11.75□□□□□ -0.53
CUX1-207ENST00000465461 UPK3BL1B0FP48 263 aa11.75□□□□□ -0.53
CUX1-207ENST00000465461 UPK3BL2E5RIL1 263 aa11.75□□□□□ -0.53
CUX1-207ENST00000465461 H0Y8X5 98 aa11.75□□□□□ -0.53
CUX1-207ENST00000465461 APOC4-APOC2K7ER74 178 aa11.75□□□□□ -0.53
CUX1-207ENST00000465461 ENC1O14682 589 aa11.75□□□□□ -0.53
CUX1-207ENST00000465461 RIOK3O14730 519 aaKnown RBP11.75□□□□□ -0.53
CUX1-207ENST00000465461 AREL1O15033 823 aa11.75□□□□□ -0.53
CUX1-207ENST00000465461 RAD51BO15315 384 aa11.75□□□□□ -0.53
CUX1-207ENST00000465461 APOC2P02655 101 aa11.75□□□□□ -0.53
CUX1-207ENST00000465461 MMP2P08253 660 aa11.75□□□□□ -0.53
CUX1-207ENST00000465461 CTPS1P17812 591 aa11.75□□□□□ -0.53
CUX1-207ENST00000465461 PTPN3P26045 913 aa11.75□□□□□ -0.53
CUX1-207ENST00000465461 RBL1P28749 1068 aa11.75□□□□□ -0.53
CUX1-207ENST00000465461 PTPN7P35236 360 aa11.75□□□□□ -0.53
CUX1-207ENST00000465461 CD86P42081 329 aa11.75□□□□□ -0.53
CUX1-207ENST00000465461 CLDN2P57739 230 aa11.75□□□□□ -0.53
CUX1-207ENST00000465461 FAM193AP78312 1265 aa11.75□□□□□ -0.53
CUX1-207ENST00000465461 IFI35P80217 286 aaPredicted RBP11.75□□□□□ -0.53
CUX1-207ENST00000465461 WASHC5Q12768 1159 aa11.75□□□□□ -0.53
CUX1-207ENST00000465461 GRM3Q14832 879 aa11.75□□□□□ -0.53
CUX1-207ENST00000465461 NOMO1Q15155 1222 aa11.75□□□□□ -0.53
CUX1-207ENST00000465461 RPS6KA1Q15418 735 aa11.75□□□□□ -0.53
CUX1-207ENST00000465461 PRAMEF14Q5SWL7 426 aa11.75□□□□□ -0.53
CUX1-207ENST00000465461 KDELC2Q7Z4H8 507 aa11.75□□□□□ -0.53
CUX1-207ENST00000465461 CEP76Q8TAP6 659 aa11.75□□□□□ -0.53
CUX1-207ENST00000465461 FATE1Q969F0 183 aa11.75□□□□□ -0.53
CUX1-207ENST00000465461 FEM1CQ96JP0 617 aa11.75□□□□□ -0.53
CUX1-207ENST00000465461 ALS2CR12Q96Q35 445 aa11.75□□□□□ -0.53
CUX1-207ENST00000465461 RBM15Q96T37 977 aaKnown RBP eCLIP11.75□□□□□ -0.53
CUX1-207ENST00000465461 EDEM2Q9BV94 578 aa11.75□□□□□ -0.53
CUX1-207ENST00000465461 NUSAP1Q9BXS6 441 aaKnown RBP11.75□□□□□ -0.53
CUX1-207ENST00000465461 IL21RQ9HBE5 538 aa11.75□□□□□ -0.53
CUX1-207ENST00000465461 UBP1Q9NZI7 540 aa11.75□□□□□ -0.53
CUX1-207ENST00000465461 CHKBQ9Y259 395 aa11.75□□□□□ -0.53
CUX1-207ENST00000465461 R3HDM2Q9Y2K5 976 aaKnown RBP11.75□□□□□ -0.53
CUX1-207ENST00000465461 RAI2Q9Y5P3 530 aa11.75□□□□□ -0.53
CUX1-207ENST00000465461 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP11.74□□□□□ -0.53
CUX1-207ENST00000465461 C4orf47A7E2U8 309 aa11.74□□□□□ -0.53
CUX1-207ENST00000465461 CDX4O14627 284 aaPredicted RBP11.74□□□□□ -0.53
CUX1-207ENST00000465461 HTRA2O43464 458 aaPredicted RBP11.74□□□□□ -0.53
CUX1-207ENST00000465461 TSPAN6O43657 245 aa11.74□□□□□ -0.53
CUX1-207ENST00000465461 AP1G1O43747 822 aa11.74□□□□□ -0.53
CUX1-207ENST00000465461 TJP3O95049 919 aa11.74□□□□□ -0.53
CUX1-207ENST00000465461 PGLSO95336 258 aa11.74□□□□□ -0.53
CUX1-207ENST00000465461 CPP00450 1065 aa11.74□□□□□ -0.53
CUX1-207ENST00000465461 ALPIP09923 528 aa11.74□□□□□ -0.53
CUX1-207ENST00000465461 CXCR5P32302 372 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 95.5 ms