RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 NCBP2-AS2Q69YL0 99 aa17.96■□□□□ 0.47
COL7A1-205ENST00000465238 NAPEPLDQ6IQ20 393 aa17.96■□□□□ 0.47
COL7A1-205ENST00000465238 SPOCD1Q6ZMY3 1216 aa17.96■□□□□ 0.47
COL7A1-205ENST00000465238 OXR1Q8N573 874 aa17.96■□□□□ 0.47
COL7A1-205ENST00000465238 UBL4BQ8N7F7 174 aa17.96■□□□□ 0.47
COL7A1-205ENST00000465238 ISG20Q96AZ6 181 aaKnown RBP17.96■□□□□ 0.47
COL7A1-205ENST00000465238 TNKS2Q9H2K2 1166 aa17.96■□□□□ 0.47
COL7A1-205ENST00000465238 ERVMER34-1Q9H9K5 563 aa17.96■□□□□ 0.47
COL7A1-205ENST00000465238 DKK4Q9UBT3 224 aa17.96■□□□□ 0.47
COL7A1-205ENST00000465238 SARDHQ9UL12 918 aa17.96■□□□□ 0.47
COL7A1-205ENST00000465238 PPM1HQ9ULR3 514 aa17.96■□□□□ 0.47
COL7A1-205ENST00000465238 DMTF1Q9Y222 760 aa17.96■□□□□ 0.47
COL7A1-205ENST00000465238 CAPN6Q9Y6Q1 641 aa17.96■□□□□ 0.47
COL7A1-205ENST00000465238 SHROOM3Q8TF72 1996 aa17.95■□□□□ 0.46
COL7A1-205ENST00000465238 MIF4GDA9UHW6 222 aaKnown RBP17.95■□□□□ 0.46
COL7A1-205ENST00000465238 FTCDO95954 541 aa17.95■□□□□ 0.46
COL7A1-205ENST00000465238 CETN2P41208 172 aa17.95■□□□□ 0.46
COL7A1-205ENST00000465238 CDKN2BP42772 138 aa17.95■□□□□ 0.46
COL7A1-205ENST00000465238 METAP1P53582 386 aa17.95■□□□□ 0.46
COL7A1-205ENST00000465238 NXPH1P58417 271 aa17.95■□□□□ 0.46
COL7A1-205ENST00000465238 TFDP2Q14188 446 aa17.95■□□□□ 0.46
COL7A1-205ENST00000465238 SHBQ15464 509 aa17.95■□□□□ 0.46
COL7A1-205ENST00000465238 SMAD1Q15797 465 aaKnown RBP17.95■□□□□ 0.46
COL7A1-205ENST00000465238 CARD16Q5EG05 197 aa17.95■□□□□ 0.46
COL7A1-205ENST00000465238 ARHGAP36Q6ZRI8 547 aa17.95■□□□□ 0.46
COL7A1-205ENST00000465238 IQCHQ86VS3 1027 aa17.95■□□□□ 0.46
COL7A1-205ENST00000465238 GATAD2AQ86YP4 633 aa17.95■□□□□ 0.46
COL7A1-205ENST00000465238 LRRC49Q8IUZ0 686 aa17.95■□□□□ 0.46
COL7A1-205ENST00000465238 TP53INP2Q8IXH6 220 aa17.95■□□□□ 0.46
COL7A1-205ENST00000465238 ATPAF2Q8N5M1 289 aa17.95■□□□□ 0.46
COL7A1-205ENST00000465238 MFSD2AQ8NA29 543 aa17.95■□□□□ 0.46
COL7A1-205ENST00000465238 PIP4K2CQ8TBX8 421 aa17.95■□□□□ 0.46
COL7A1-205ENST00000465238 SAP25Q8TEE9 199 aa17.95■□□□□ 0.46
COL7A1-205ENST00000465238 NSMCE1Q8WV22 266 aa17.95■□□□□ 0.46
COL7A1-205ENST00000465238 UBE2Q2Q8WVN8 375 aa17.95■□□□□ 0.46
COL7A1-205ENST00000465238 ALS2CR12Q96Q35 445 aa17.95■□□□□ 0.46
COL7A1-205ENST00000465238 KCNF1Q9H3M0 494 aa17.95■□□□□ 0.46
COL7A1-205ENST00000465238 PCDHGA1Q9Y5H4 931 aa17.95■□□□□ 0.46
COL7A1-205ENST00000465238 DOCK9Q9BZ29 2069 aa17.94■□□□□ 0.46
COL7A1-205ENST00000465238 PLK4O00444 970 aa17.94■□□□□ 0.46
COL7A1-205ENST00000465238 ZSCAN12O43309 604 aa17.94■□□□□ 0.46
COL7A1-205ENST00000465238 MFSD11O43934 449 aa17.94■□□□□ 0.46
COL7A1-205ENST00000465238 MAGEC1O60732 1142 aa17.94■□□□□ 0.46
COL7A1-205ENST00000465238 TMCC1O94876 653 aa17.94■□□□□ 0.46
COL7A1-205ENST00000465238 MX2P20592 715 aa17.94■□□□□ 0.46
COL7A1-205ENST00000465238 EPHA8P29322 1005 aaPredicted RBP17.94■□□□□ 0.46
COL7A1-205ENST00000465238 CHRNA3P32297 505 aa17.94■□□□□ 0.46
COL7A1-205ENST00000465238 PEX5P50542 639 aa17.94■□□□□ 0.46
COL7A1-205ENST00000465238 RHOAP61586 193 aa17.94■□□□□ 0.46
COL7A1-205ENST00000465238 SNRPD1P62314 119 aaKnown RBP17.94■□□□□ 0.46
COL7A1-205ENST00000465238 CNTN1Q12860 1018 aa17.94■□□□□ 0.46
COL7A1-205ENST00000465238 OVGP1Q12889 678 aa17.94■□□□□ 0.46
COL7A1-205ENST00000465238 CCDC157Q569K6 752 aa17.94■□□□□ 0.46
COL7A1-205ENST00000465238 TFDP3Q5H9I0 405 aa17.94■□□□□ 0.46
COL7A1-205ENST00000465238 AGBL4Q5VU57 503 aa17.94■□□□□ 0.46
COL7A1-205ENST00000465238 KAZNQ674X7 775 aa17.94■□□□□ 0.46
COL7A1-205ENST00000465238 SLC9A4Q6AI14 798 aa17.94■□□□□ 0.46
COL7A1-205ENST00000465238 TRIM69Q86WT6 500 aa17.94■□□□□ 0.46
COL7A1-205ENST00000465238 PLPP6Q8IY26 295 aa17.94■□□□□ 0.46
COL7A1-205ENST00000465238 RYBPQ8N488 228 aaPredicted RBP17.94■□□□□ 0.46
COL7A1-205ENST00000465238 OR2A12Q8NGT7 310 aa17.94■□□□□ 0.46
COL7A1-205ENST00000465238 MDM1Q8TC05 714 aa17.94■□□□□ 0.46
COL7A1-205ENST00000465238 PDFQ9HBH1 243 aa17.94■□□□□ 0.46
COL7A1-205ENST00000465238 ADAMTS20P59510 1910 aa17.94■□□□□ 0.46
COL7A1-205ENST00000465238 ENC1O14682 589 aa17.93■□□□□ 0.46
COL7A1-205ENST00000465238 ZNF821O75541 412 aaPredicted RBP17.93■□□□□ 0.46
COL7A1-205ENST00000465238 LDOC1O95751 146 aaPredicted RBP17.93■□□□□ 0.46
COL7A1-205ENST00000465238 GSRP00390 522 aa17.93■□□□□ 0.46
COL7A1-205ENST00000465238 CDK4P11802 303 aa17.93■□□□□ 0.46
COL7A1-205ENST00000465238 KRT10P13645 584 aa17.93■□□□□ 0.46
COL7A1-205ENST00000465238 RXRGP48443 463 aa17.93■□□□□ 0.46
COL7A1-205ENST00000465238 COPS2P61201 443 aa17.93■□□□□ 0.46
COL7A1-205ENST00000465238 DYNLT1P63172 113 aa17.93■□□□□ 0.46
COL7A1-205ENST00000465238 GBE1Q04446 702 aa17.93■□□□□ 0.46
COL7A1-205ENST00000465238 GALNT2Q10471 571 aa17.93■□□□□ 0.46
COL7A1-205ENST00000465238 RFTN1Q14699 578 aaPredicted RBP17.93■□□□□ 0.46
COL7A1-205ENST00000465238 LLGL1Q15334 1064 aa17.93■□□□□ 0.46
COL7A1-205ENST00000465238 CYTH1Q15438 398 aa17.93■□□□□ 0.46
COL7A1-205ENST00000465238 TAZQ16635 292 aa17.93■□□□□ 0.46
COL7A1-205ENST00000465238 SETMARQ53H47 684 aaPredicted RBP17.93■□□□□ 0.46
COL7A1-205ENST00000465238 DHRS13Q6UX07 377 aa17.93■□□□□ 0.46
COL7A1-205ENST00000465238 DPY19L3Q6ZPD9 716 aa17.93■□□□□ 0.46
COL7A1-205ENST00000465238 PLD5Q8N7P1 536 aa17.93■□□□□ 0.46
COL7A1-205ENST00000465238 OR2AP1Q8NGE2 309 aa17.93■□□□□ 0.46
COL7A1-205ENST00000465238 CNDP2Q96KP4 475 aaKnown RBP17.93■□□□□ 0.46
COL7A1-205ENST00000465238 ZNF599Q96NL3 588 aa17.93■□□□□ 0.46
COL7A1-205ENST00000465238 HEPHQ9BQS7 1158 aa17.93■□□□□ 0.46
COL7A1-205ENST00000465238 TM6SF2Q9BZW4 377 aa17.93■□□□□ 0.46
COL7A1-205ENST00000465238 PREBQ9HCU5 417 aa17.93■□□□□ 0.46
COL7A1-205ENST00000465238 HECAQ9UBI9 543 aaPredicted RBP17.93■□□□□ 0.46
COL7A1-205ENST00000465238 PACSIN2Q9UNF0 486 aaPredicted RBP17.93■□□□□ 0.46
COL7A1-205ENST00000465238 GPSM3Q9Y4H4 160 aa17.93■□□□□ 0.46
COL7A1-205ENST00000465238 HEY1Q9Y5J3 304 aa17.93■□□□□ 0.46
COL7A1-205ENST00000465238 ARID1BQ8NFD5 2236 aaPredicted RBP17.92■□□□□ 0.46
COL7A1-205ENST00000465238 URB1O60287 2271 aaKnown RBP17.92■□□□□ 0.46
COL7A1-205ENST00000465238 hCG_1818297A0A087WSY0 165 aa17.92■□□□□ 0.46
COL7A1-205ENST00000465238 TRABD2BA6NFA1 517 aa17.92■□□□□ 0.46
COL7A1-205ENST00000465238 MAFKO60675 156 aa17.92■□□□□ 0.46
COL7A1-205ENST00000465238 CST8O60676 142 aa17.92■□□□□ 0.46
COL7A1-205ENST00000465238 MAP3K6O95382 1288 aa17.92■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms