RNA–Protein interactions for RNA: ENST00000460162.1

PTPN4-207, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-207ENST00000460162 TLX3O43711 291 aaPredicted RBP23■■□□□ 1.27
PTPN4-207ENST00000460162 EIF2S3P41091 472 aaKnown RBP23■■□□□ 1.27
PTPN4-207ENST00000460162 CA9Q16790 459 aa23■■□□□ 1.27
PTPN4-207ENST00000460162 KLHL40Q2TBA0 621 aa23■■□□□ 1.27
PTPN4-207ENST00000460162 CFAP58Q5T655 872 aa23■■□□□ 1.27
PTPN4-207ENST00000460162 BRAT1Q6PJG6 821 aa23■■□□□ 1.27
PTPN4-207ENST00000460162 ZNF571Q7Z3V5 609 aaPredicted RBP23■■□□□ 1.27
PTPN4-207ENST00000460162 ARFGAP1Q8N6T3 406 aa23■■□□□ 1.27
PTPN4-207ENST00000460162 IFI44Q8TCB0 444 aa23■■□□□ 1.27
PTPN4-207ENST00000460162 LMX1AQ8TE12 382 aa23■■□□□ 1.27
PTPN4-207ENST00000460162 TRIM11Q96F44 468 aa23■■□□□ 1.27
PTPN4-207ENST00000460162 CELF6Q96J87 481 aaKnown RBP23■■□□□ 1.27
PTPN4-207ENST00000460162 SUV39H2Q9H5I1 410 aa23■■□□□ 1.27
PTPN4-207ENST00000460162 J3KR12 359 aa22.99■■□□□ 1.27
PTPN4-207ENST00000460162 PRPSAP2O60256 369 aa22.99■■□□□ 1.27
PTPN4-207ENST00000460162 LZTS3O60299 673 aaPredicted RBP22.99■■□□□ 1.27
PTPN4-207ENST00000460162 BRINP1O60477 761 aa22.99■■□□□ 1.27
PTPN4-207ENST00000460162 CSNK1DP48730 415 aa22.99■■□□□ 1.27
PTPN4-207ENST00000460162 ZNF165P49910 485 aa22.99■■□□□ 1.27
PTPN4-207ENST00000460162 IRF4Q15306 451 aa22.99■■□□□ 1.27
PTPN4-207ENST00000460162 UGP2Q16851 508 aa22.99■■□□□ 1.27
PTPN4-207ENST00000460162 AFMIDQ63HM1 303 aa22.99■■□□□ 1.27
PTPN4-207ENST00000460162 ERAP2Q6P179 960 aa22.99■■□□□ 1.27
PTPN4-207ENST00000460162 CYP4V2Q6ZWL3 525 aaPredicted RBP22.99■■□□□ 1.27
PTPN4-207ENST00000460162 RBFAQ8N0V3 343 aa22.99■■□□□ 1.27
PTPN4-207ENST00000460162 ZNF653Q96CK0 615 aa22.99■■□□□ 1.27
PTPN4-207ENST00000460162 KCTD15Q96SI1 283 aaPredicted RBP22.99■■□□□ 1.27
PTPN4-207ENST00000460162 IL12RB2Q99665 862 aa22.99■■□□□ 1.27
PTPN4-207ENST00000460162 LRRC61Q9BV99 259 aa22.99■■□□□ 1.27
PTPN4-207ENST00000460162 EDEM3Q9BZQ6 932 aa22.99■■□□□ 1.27
PTPN4-207ENST00000460162 SLC39A8Q9C0K1 460 aa22.99■■□□□ 1.27
PTPN4-207ENST00000460162 MBNL1Q9NR56 388 aaKnown RBP22.99■■□□□ 1.27
PTPN4-207ENST00000460162 CNOT8Q9UFF9 292 aaKnown RBP22.99■■□□□ 1.27
PTPN4-207ENST00000460162 PCSK1NQ9UHG2 260 aa22.99■■□□□ 1.27
PTPN4-207ENST00000460162 DAPK3O43293 454 aa22.98■■□□□ 1.27
PTPN4-207ENST00000460162 FTLP02792 175 aaPredicted RBP22.98■■□□□ 1.27
PTPN4-207ENST00000460162 MYBL1P10243 752 aa22.98■■□□□ 1.27
PTPN4-207ENST00000460162 MYF5P13349 255 aa22.98■■□□□ 1.27
PTPN4-207ENST00000460162 C6P13671 934 aa22.98■■□□□ 1.27
PTPN4-207ENST00000460162 ITIH2P19823 946 aa22.98■■□□□ 1.27
PTPN4-207ENST00000460162 MIPP30301 263 aa22.98■■□□□ 1.27
PTPN4-207ENST00000460162 ACTN2P35609 894 aa22.98■■□□□ 1.27
PTPN4-207ENST00000460162 MMP12P39900 470 aa22.98■■□□□ 1.27
PTPN4-207ENST00000460162 PAPOLAP51003 745 aaKnown RBP22.98■■□□□ 1.27
PTPN4-207ENST00000460162 KLHL30Q0D2K2 578 aa22.98■■□□□ 1.27
PTPN4-207ENST00000460162 DEFB133Q30KQ1 61 aa22.98■■□□□ 1.27
PTPN4-207ENST00000460162 LRRC69Q6ZNQ3 347 aa22.98■■□□□ 1.27
PTPN4-207ENST00000460162 SLC13A1Q9BZW2 595 aa22.98■■□□□ 1.27
PTPN4-207ENST00000460162 ATP13A3Q9H7F0 1226 aa22.98■■□□□ 1.27
PTPN4-207ENST00000460162 SP110Q9HB58 689 aa22.98■■□□□ 1.27
PTPN4-207ENST00000460162 PCDH12Q9NPG4 1184 aa22.98■■□□□ 1.27
PTPN4-207ENST00000460162 PCDHB1Q9Y5F3 818 aa22.98■■□□□ 1.27
PTPN4-207ENST00000460162 DDX3XO00571 662 aaKnown RBP eCLIP22.97■■□□□ 1.275e-7■□□□□ 9
PTPN4-207ENST00000460162 RRP8O43159 456 aaKnown RBP22.97■■□□□ 1.27
PTPN4-207ENST00000460162 LRCH4O75427 683 aa22.97■■□□□ 1.27
PTPN4-207ENST00000460162 PALMO75781 387 aa22.97■■□□□ 1.27
PTPN4-207ENST00000460162 ERCC2P18074 760 aa22.97■■□□□ 1.27
PTPN4-207ENST00000460162 SERPINA4P29622 427 aa22.97■■□□□ 1.27
PTPN4-207ENST00000460162 EIF4A3P38919 411 aaKnown RBP22.97■■□□□ 1.27
PTPN4-207ENST00000460162 PEX5P50542 639 aa22.97■■□□□ 1.27
PTPN4-207ENST00000460162 RFTN1Q14699 578 aaPredicted RBP22.97■■□□□ 1.27
PTPN4-207ENST00000460162 LRRC14Q15048 493 aa22.97■■□□□ 1.27
PTPN4-207ENST00000460162 AGERQ15109 404 aa22.97■■□□□ 1.27
PTPN4-207ENST00000460162 TBC1D25Q3MII6 688 aa22.97■■□□□ 1.27
PTPN4-207ENST00000460162 PRRT3Q5FWE3 981 aa22.97■■□□□ 1.27
PTPN4-207ENST00000460162 PPP6R3Q5H9R7 873 aaPredicted RBP22.97■■□□□ 1.27
PTPN4-207ENST00000460162 FIGNQ5HY92 759 aa22.97■■□□□ 1.27
PTPN4-207ENST00000460162 CAVIN1Q6NZI2 390 aaKnown RBP22.97■■□□□ 1.27
PTPN4-207ENST00000460162 ARHGAP12Q8IWW6 846 aa22.97■■□□□ 1.27
PTPN4-207ENST00000460162 NPWQ8N729 165 aa22.97■■□□□ 1.27
PTPN4-207ENST00000460162 MAPK15Q8TD08 544 aa22.97■■□□□ 1.27
PTPN4-207ENST00000460162 CINPQ9BW66 212 aaPredicted RBP22.97■■□□□ 1.27
PTPN4-207ENST00000460162 BOCQ9BWV1 1114 aa22.97■■□□□ 1.27
PTPN4-207ENST00000460162 TRIM7Q9C029 511 aa22.97■■□□□ 1.27
PTPN4-207ENST00000460162 ABCG4Q9H172 646 aa22.97■■□□□ 1.27
PTPN4-207ENST00000460162 MRPL47Q9HD33 250 aaKnown RBP22.97■■□□□ 1.27
PTPN4-207ENST00000460162 PNMA8BQ9ULN7 279 aaPredicted RBP22.97■■□□□ 1.27
PTPN4-207ENST00000460162 ATP8A1Q9Y2Q0 1164 aa22.97■■□□□ 1.27
PTPN4-207ENST00000460162 EME2A4GXA9 379 aaPredicted RBP22.96■■□□□ 1.27
PTPN4-207ENST00000460162 TMEM110-MUSTN1A8MSY1 372 aa22.96■■□□□ 1.27
PTPN4-207ENST00000460162 LMO7DNF2Z398 122 aa22.96■■□□□ 1.27
PTPN4-207ENST00000460162 RGRP47804 291 aa22.96■■□□□ 1.27
PTPN4-207ENST00000460162 HCAR3P49019 387 aa22.96■■□□□ 1.27
PTPN4-207ENST00000460162 BLKP51451 505 aa22.96■■□□□ 1.27
PTPN4-207ENST00000460162 PPARDQ03181 441 aa22.96■■□□□ 1.27
PTPN4-207ENST00000460162 IL10RBQ08334 325 aa22.96■■□□□ 1.27
PTPN4-207ENST00000460162 NR0B2Q15466 257 aa22.96■■□□□ 1.27
PTPN4-207ENST00000460162 CDKN3Q16667 212 aa22.96■■□□□ 1.27
PTPN4-207ENST00000460162 C6orf132Q5T0Z8 1188 aa22.96■■□□□ 1.27
PTPN4-207ENST00000460162 GUSBP11Q6P575 273 aa22.96■■□□□ 1.27
PTPN4-207ENST00000460162 TSEN2Q8NCE0 465 aaKnown RBP22.96■■□□□ 1.27
PTPN4-207ENST00000460162 FGF11Q92914 225 aa22.96■■□□□ 1.27
PTPN4-207ENST00000460162 GLMNQ92990 594 aa22.96■■□□□ 1.27
PTPN4-207ENST00000460162 TCEAL2Q9H3H9 227 aaPredicted RBP22.96■■□□□ 1.27
PTPN4-207ENST00000460162 ZWILCHQ9H900 591 aa22.96■■□□□ 1.27
PTPN4-207ENST00000460162 COQ6Q9Y2Z9 468 aa22.96■■□□□ 1.27
PTPN4-207ENST00000460162 BUB1BO60566 1050 aaPredicted RBP22.95■■□□□ 1.26
PTPN4-207ENST00000460162 CSO75390 466 aaKnown RBP22.95■■□□□ 1.26
PTPN4-207ENST00000460162 GCATO75600 419 aa22.95■■□□□ 1.26
PTPN4-207ENST00000460162 ANXA6P08133 673 aa22.95■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms