RNA–Protein interactions for RNA: ENST00000459783.5

MRPL55-223, Transcript of mitochondrial ribosomal protein L55, human

TSL 5 BASIC

Gene MRPL55, Length 694 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MRPL55-223	ENST00000459783	SNX19	Q92543	992 aa		10.35	□□□□□ -0.75
MRPL55-223	ENST00000459783	SPOCK2	Q92563	424 aa		10.35	□□□□□ -0.75
MRPL55-223	ENST00000459783	P3H4	Q92791	437 aa		10.35	□□□□□ -0.75
MRPL55-223	ENST00000459783	TADA1	Q96BN2	335 aa		10.35	□□□□□ -0.75
MRPL55-223	ENST00000459783	ZNF641	Q96N77	438 aa	Predicted RBP	10.35	□□□□□ -0.75
MRPL55-223	ENST00000459783	SLC6A18	Q96N87	628 aa		10.35	□□□□□ -0.75
MRPL55-223	ENST00000459783	GORASP1	Q9BQQ3	440 aa		10.35	□□□□□ -0.75
MRPL55-223	ENST00000459783	BRD8	Q9H0E9	1235 aa		10.35	□□□□□ -0.75
MRPL55-223	ENST00000459783	MIR1-1HG	Q9H1L0	117 aa		10.35	□□□□□ -0.75
MRPL55-223	ENST00000459783	KDM4C	Q9H3R0	1056 aa		10.35	□□□□□ -0.75
MRPL55-223	ENST00000459783	ATP13A3	Q9H7F0	1226 aa		10.35	□□□□□ -0.75
MRPL55-223	ENST00000459783	CAAP1	Q9H8G2	361 aa		10.35	□□□□□ -0.75
MRPL55-223	ENST00000459783	PREB	Q9HCU5	417 aa		10.35	□□□□□ -0.75
MRPL55-223	ENST00000459783	TM9SF3	Q9HD45	589 aa		10.35	□□□□□ -0.75
MRPL55-223	ENST00000459783	FZD3	Q9NPG1	666 aa		10.35	□□□□□ -0.75
MRPL55-223	ENST00000459783	PCDH12	Q9NPG4	1184 aa		10.35	□□□□□ -0.75
MRPL55-223	ENST00000459783	SCUBE2	Q9NQ36	999 aa		10.35	□□□□□ -0.75
MRPL55-223	ENST00000459783	DYRK4	Q9NR20	520 aa		10.35	□□□□□ -0.75
MRPL55-223	ENST00000459783	VPS45	Q9NRW7	570 aa		10.35	□□□□□ -0.75
MRPL55-223	ENST00000459783	SEPT10	Q9P0V9	454 aa		10.35	□□□□□ -0.75
MRPL55-223	ENST00000459783	IGF2BP2	Q9Y6M1	599 aa	Known RBP eCLIP	10.35	□□□□□ -0.75
MRPL55-223	ENST00000459783	PCDH15	Q96QU1	1955 aa		10.35	□□□□□ -0.75
MRPL55-223	ENST00000459783	GON4L	Q3T8J9	2241 aa		10.34	□□□□□ -0.75
MRPL55-223	ENST00000459783	SHROOM3	Q8TF72	1996 aa		10.34	□□□□□ -0.75
MRPL55-223	ENST00000459783	ZNF292	O60281	2723 aa		10.34	□□□□□ -0.75
MRPL55-223	ENST00000459783		A0A1W2PR77	199 aa		10.34	□□□□□ -0.75
MRPL55-223	ENST00000459783	IGLON5	A6NGN9	336 aa		10.34	□□□□□ -0.75
MRPL55-223	ENST00000459783		F5H423	210 aa	Predicted RBP	10.34	□□□□□ -0.75
MRPL55-223	ENST00000459783	ENC1	O14682	589 aa		10.34	□□□□□ -0.75
MRPL55-223	ENST00000459783	RIOK3	O14730	519 aa	Known RBP	10.34	□□□□□ -0.75
MRPL55-223	ENST00000459783	NRDC	O43847	1150 aa		10.34	□□□□□ -0.75
MRPL55-223	ENST00000459783	LRP3	O75074	770 aa		10.34	□□□□□ -0.75
MRPL55-223	ENST00000459783	PGLS	O95336	258 aa		10.34	□□□□□ -0.75
MRPL55-223	ENST00000459783	RBL1	P28749	1068 aa		10.34	□□□□□ -0.75
MRPL55-223	ENST00000459783	SERPINA4	P29622	427 aa		10.34	□□□□□ -0.75
MRPL55-223	ENST00000459783	MMP12	P39900	470 aa		10.34	□□□□□ -0.75
MRPL55-223	ENST00000459783	EIF3E	P60228	445 aa	Known RBP	10.34	□□□□□ -0.75
MRPL55-223	ENST00000459783	BCL2L1	Q07817	233 aa		10.34	□□□□□ -0.75
MRPL55-223	ENST00000459783	SFSWAP	Q12872	951 aa	Known RBP	10.34	□□□□□ -0.75
MRPL55-223	ENST00000459783	RPS6KA1	Q15418	735 aa		10.34	□□□□□ -0.75
MRPL55-223	ENST00000459783	TMEM52B	Q4KMG9	183 aa		10.34	□□□□□ -0.75
MRPL55-223	ENST00000459783	TEX44	Q53QW1	395 aa		10.34	□□□□□ -0.75
MRPL55-223	ENST00000459783	SLC45A4	Q5BKX6	768 aa		10.34	□□□□□ -0.75
MRPL55-223	ENST00000459783	TRIM61	Q5EBN2	209 aa		10.34	□□□□□ -0.75
MRPL55-223	ENST00000459783	WDR45B	Q5MNZ6	344 aa		10.34	□□□□□ -0.75
MRPL55-223	ENST00000459783	SYCP2L	Q5T4T6	812 aa		10.34	□□□□□ -0.75
MRPL55-223	ENST00000459783	TTC7B	Q86TV6	843 aa		10.34	□□□□□ -0.75
MRPL55-223	ENST00000459783	HORMAD1	Q86X24	394 aa		10.34	□□□□□ -0.75
MRPL55-223	ENST00000459783	SLC13A5	Q86YT5	568 aa	Predicted RBP	10.34	□□□□□ -0.75
MRPL55-223	ENST00000459783	RGL4	Q8IZJ4	473 aa		10.34	□□□□□ -0.75
MRPL55-223	ENST00000459783	ZNF567	Q8N184	647 aa		10.34	□□□□□ -0.75
MRPL55-223	ENST00000459783	SLC35F6	Q8N357	371 aa		10.34	□□□□□ -0.75
MRPL55-223	ENST00000459783	TMEM145	Q8NBT3	493 aa		10.34	□□□□□ -0.75
MRPL55-223	ENST00000459783	TRIM58	Q8NG06	486 aa		10.34	□□□□□ -0.75
MRPL55-223	ENST00000459783	SPATA22	Q8NHS9	363 aa		10.34	□□□□□ -0.75
MRPL55-223	ENST00000459783	SLC35B2	Q8TB61	432 aa		10.34	□□□□□ -0.75
MRPL55-223	ENST00000459783	HCAR2	Q8TDS4	363 aa		10.34	□□□□□ -0.75
MRPL55-223	ENST00000459783	NSMCE1	Q8WV22	266 aa		10.34	□□□□□ -0.75
MRPL55-223	ENST00000459783	PIH1D2	Q8WWB5	315 aa		10.34	□□□□□ -0.75
MRPL55-223	ENST00000459783	ATG4A	Q8WYN0	398 aa		10.34	□□□□□ -0.75
MRPL55-223	ENST00000459783	ANP32B	Q92688	251 aa	Known RBP	10.34	□□□□□ -0.75
MRPL55-223	ENST00000459783	RAB7B	Q96AH8	199 aa		10.34	□□□□□ -0.75
MRPL55-223	ENST00000459783	IMP4	Q96G21	291 aa	Known RBP	10.34	□□□□□ -0.75
MRPL55-223	ENST00000459783	TEKT5	Q96M29	485 aa		10.34	□□□□□ -0.75
MRPL55-223	ENST00000459783	AGAP3	Q96P47	875 aa		10.34	□□□□□ -0.75
MRPL55-223	ENST00000459783	TRIB3	Q96RU7	358 aa		10.34	□□□□□ -0.75
MRPL55-223	ENST00000459783	KLF6	Q99612	283 aa	Predicted RBP	10.34	□□□□□ -0.75
MRPL55-223	ENST00000459783	MYOC	Q99972	504 aa		10.34	□□□□□ -0.75
MRPL55-223	ENST00000459783	HINFP	Q9BQA5	517 aa		10.34	□□□□□ -0.75
MRPL55-223	ENST00000459783	C1QTNF2	Q9BXJ5	285 aa		10.34	□□□□□ -0.75
MRPL55-223	ENST00000459783	TDRD1	Q9BXT4	1180 aa	Known RBP	10.34	□□□□□ -0.75
MRPL55-223	ENST00000459783	POLR1E	Q9GZS1	481 aa	Known RBP	10.34	□□□□□ -0.75
MRPL55-223	ENST00000459783	USP29	Q9HBJ7	922 aa		10.34	□□□□□ -0.75
MRPL55-223	ENST00000459783	GLOD4	Q9HC38	313 aa		10.34	□□□□□ -0.75
MRPL55-223	ENST00000459783	AMACR	Q9UHK6	382 aa		10.34	□□□□□ -0.75
MRPL55-223	ENST00000459783	TTLL3	Q9Y4R7	772 aa		10.34	□□□□□ -0.75
MRPL55-223	ENST00000459783	RAI2	Q9Y5P3	530 aa		10.34	□□□□□ -0.75
MRPL55-223	ENST00000459783	CFAP54	Q96N23	3096 aa		10.34	□□□□□ -0.75
MRPL55-223	ENST00000459783	PLXNA2	O75051	1894 aa		10.34	□□□□□ -0.75
MRPL55-223	ENST00000459783	CEP192	Q8TEP8	1941 aa		10.33	□□□□□ -0.76
MRPL55-223	ENST00000459783	LOC107983988	A0A1B0GUW6	1196 aa	Predicted RBP	10.33	□□□□□ -0.76
MRPL55-223	ENST00000459783		A0A1B0GVT2	93 aa		10.33	□□□□□ -0.76
MRPL55-223	ENST00000459783	HACD1	B0YJ81	288 aa		10.33	□□□□□ -0.76
MRPL55-223	ENST00000459783		H0Y8X5	98 aa		10.33	□□□□□ -0.76
MRPL55-223	ENST00000459783	CDX4	O14627	284 aa	Predicted RBP	10.33	□□□□□ -0.76
MRPL55-223	ENST00000459783	KCNK3	O14649	394 aa		10.33	□□□□□ -0.76
MRPL55-223	ENST00000459783	BCAT2	O15382	392 aa	Predicted RBP	10.33	□□□□□ -0.76
MRPL55-223	ENST00000459783	SLC31A1	O15431	190 aa		10.33	□□□□□ -0.76
MRPL55-223	ENST00000459783	MMP20	O60882	483 aa		10.33	□□□□□ -0.76
MRPL55-223	ENST00000459783	SOCS5	O75159	536 aa		10.33	□□□□□ -0.76
MRPL55-223	ENST00000459783	TJP3	O95049	919 aa		10.33	□□□□□ -0.76
MRPL55-223	ENST00000459783	PCDH8	O95206	1070 aa		10.33	□□□□□ -0.76
MRPL55-223	ENST00000459783	ATP1A1	P05023	1023 aa	Known RBP	10.33	□□□□□ -0.76
MRPL55-223	ENST00000459783	SERPINF2	P08697	491 aa		10.33	□□□□□ -0.76
MRPL55-223	ENST00000459783	RBP3	P10745	1247 aa		10.33	□□□□□ -0.76
MRPL55-223	ENST00000459783	NFKB1	P19838	968 aa		10.33	□□□□□ -0.76
MRPL55-223	ENST00000459783	LHCGR	P22888	699 aa		10.33	□□□□□ -0.76
MRPL55-223	ENST00000459783	CXCR5	P32302	372 aa		10.33	□□□□□ -0.76
MRPL55-223	ENST00000459783	HOXD12	P35452	270 aa		10.33	□□□□□ -0.76
MRPL55-223	ENST00000459783	CD86	P42081	329 aa		10.33	□□□□□ -0.76

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