RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 SLC35C2Q9NQQ7 365 aa4.88□□□□□ -1.63
CCDC88A-209ENST00000456975 RXFP3Q9NSD7 469 aa4.88□□□□□ -1.63
CCDC88A-209ENST00000456975 DDX28Q9NUL7 540 aaKnown RBP4.88□□□□□ -1.63
CCDC88A-209ENST00000456975 INTS9Q9NV88 658 aaKnown RBP4.88□□□□□ -1.63
CCDC88A-209ENST00000456975 FAIMQ9NVQ4 179 aa4.88□□□□□ -1.63
CCDC88A-209ENST00000456975 CNOT7Q9UIV1 285 aaKnown RBP4.88□□□□□ -1.63
CCDC88A-209ENST00000456975 CNOT11Q9UKZ1 510 aaKnown RBP4.88□□□□□ -1.63
CCDC88A-209ENST00000456975 NR2E3Q9Y5X4 410 aa4.88□□□□□ -1.63
CCDC88A-209ENST00000456975 UBN2Q6ZU65 1347 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 TRBV23OR9-2A0A075B6M9 112 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 A0A087X0M5 115 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 A0A1B0GX30 115 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 FAM229AH3BQW9 127 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 H7BY64 318 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 FBP2O00757 339 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 NDUFS6O75380 124 aaKnown RBP4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 GCATO75600 419 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 PRPF6O94906 941 aaKnown RBP4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 APOL3O95236 402 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 ITGB8P26012 769 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 CTNNB1P35222 781 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 ARCN1P48444 511 aaKnown RBP4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 GBX2P52951 348 aaPredicted RBP4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 IST1P53990 364 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 MANFP55145 182 aaKnown RBP4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 STARD6P59095 220 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 PSMC5P62195 406 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 IFI35P80217 286 aaPredicted RBP4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 CEBPZQ03701 1054 aaKnown RBP4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 TNK2Q07912 1038 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 PPIL2Q13356 520 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 ZNF177Q13360 481 aaPredicted RBP4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 CAMK2DQ13557 499 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 KCNC3Q14003 757 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 STARD3Q14849 445 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 ZMYND11Q15326 602 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 TAF5Q15542 800 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 GPR19Q15760 415 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 SKIDA1Q1XH10 827 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 SLC39A12Q504Y0 691 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 LIN9Q5TKA1 542 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 CENPPQ6IPU0 288 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 APOA5Q6Q788 366 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 UNQ6494/PRO21346Q6UXR6 183 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 G2E3Q7L622 706 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 TRPM8Q7Z2W7 1104 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 PLEKHH3Q7Z736 793 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 USP37Q86T82 979 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 FJX1Q86VR8 437 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 TPRA1Q86W33 373 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 SCFD1Q8WVM8 642 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 NANOS1Q8WY41 292 aaKnown RBP4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 ACDQ96AP0 544 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 FAM89AQ96GI7 184 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 ZNF570Q96NI8 536 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 CLIC6Q96NY7 704 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 LMF1Q96S06 567 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 ATP6V0BQ99437 205 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 RIT2Q99578 217 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 CDADC1Q9BWV3 514 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 OSBPL1AQ9BXW6 950 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 KCNH6Q9H252 994 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 SLC38A10Q9HBR0 1119 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 SLC40A1Q9NP59 571 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 ZBTB40Q9NUA8 1239 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 CYB5R1Q9UHQ9 305 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 TLK1Q9UKI8 766 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 PCDHGB4Q9UN71 923 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 MTMR6Q9Y217 621 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 SLC22A14Q9Y267 594 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 RIC1Q4ADV7 1423 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 A0A1W2PPW3 197 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 SHISA8B8ZZ34 492 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 PRSS44E7EML9 344 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 H0YJX3 145 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 K7ERQ8 282 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 N4BP3O15049 544 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 KCNN4O15554 427 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 SRGAP3O43295 1099 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 HEXIM1O94992 359 aaKnown RBP4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 PRAMEF12O95522 483 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 CHEK2O96017 543 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 GSTA2P09210 222 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 DLDP09622 509 aaKnown RBP4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 TXNP10599 105 aaKnown RBP4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 CCNE1P24864 410 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 PSMA2P25787 234 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 BMP8BP34820 402 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 RFC2P35250 354 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 SLC15A1P46059 708 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 AGFG1P52594 562 aaKnown RBP4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 ADAM17P78536 824 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 RBP5P82980 135 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 RELAQ04206 551 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 CHRNEQ04844 493 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 CALCOCO2Q13137 446 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 ADAM9Q13443 819 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 KCTD21Q4G0X4 260 aa4.87□□□□□ -1.63
CCDC88A-209ENST00000456975 FAM76BQ5HYJ3 339 aa4.87□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms