RNA–Protein interactions for RNA: ENST00000441114.5

SHH-204, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 888 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-204ENST00000441114 SEMA3CQ99985 751 aa18.84■□□□□ 0.61
SHH-204ENST00000441114 NOD2Q9HC29 1040 aa18.84■□□□□ 0.61
SHH-204ENST00000441114 FZD3Q9NPG1 666 aa18.84■□□□□ 0.61
SHH-204ENST00000441114 TMEM9BQ9NQ34 198 aa18.84■□□□□ 0.61
SHH-204ENST00000441114 LZTFL1Q9NQ48 299 aa18.84■□□□□ 0.61
SHH-204ENST00000441114 CA5BQ9Y2D0 317 aa18.84■□□□□ 0.61
SHH-204ENST00000441114 PCDHGC4Q9Y5F7 938 aa18.84■□□□□ 0.61
SHH-204ENST00000441114 ZNF292O60281 2723 aa18.83■□□□□ 0.61
SHH-204ENST00000441114 WDR87Q6ZQQ6 2873 aa18.83■□□□□ 0.6
SHH-204ENST00000441114 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP18.83■□□□□ 0.6
SHH-204ENST00000441114 C10orf142B7Z368 130 aa18.83■□□□□ 0.6
SHH-204ENST00000441114 CDX4O14627 284 aaPredicted RBP18.83■□□□□ 0.6
SHH-204ENST00000441114 PPP1R12AO14974 1030 aaPredicted RBP18.83■□□□□ 0.6
SHH-204ENST00000441114 TSPAN6O43657 245 aa18.83■□□□□ 0.6
SHH-204ENST00000441114 AP1G1O43747 822 aa18.83■□□□□ 0.6
SHH-204ENST00000441114 PTMAP06454 111 aaKnown RBP18.83■□□□□ 0.6
SHH-204ENST00000441114 CR2P20023 1033 aa18.83■□□□□ 0.6
SHH-204ENST00000441114 PEX5P50542 639 aa18.83■□□□□ 0.6
SHH-204ENST00000441114 RPS21P63220 83 aaKnown RBP18.83■□□□□ 0.6
SHH-204ENST00000441114 RACK1P63244 317 aaKnown RBP18.83■□□□□ 0.6
SHH-204ENST00000441114 PPIDQ08752 370 aaKnown RBP18.83■□□□□ 0.6
SHH-204ENST00000441114 ZNF284Q2VY69 593 aa18.83■□□□□ 0.6
SHH-204ENST00000441114 CCDC181Q5TID7 509 aa18.83■□□□□ 0.6
SHH-204ENST00000441114 ZSWIM9Q86XI8 627 aa18.83■□□□□ 0.6
SHH-204ENST00000441114 RNF10Q8N5U6 811 aaKnown RBP18.83■□□□□ 0.6
SHH-204ENST00000441114 ALG3Q92685 438 aa18.83■□□□□ 0.6
SHH-204ENST00000441114 P3H4Q92791 437 aa18.83■□□□□ 0.6
SHH-204ENST00000441114 WRAP53Q9BUR4 548 aaKnown RBP18.83■□□□□ 0.6
SHH-204ENST00000441114 CEP41Q9BYV8 373 aa18.83■□□□□ 0.6
SHH-204ENST00000441114 POLR1EQ9GZS1 481 aaKnown RBP18.83■□□□□ 0.6
SHH-204ENST00000441114 TPX2Q9ULW0 747 aaKnown RBP18.83■□□□□ 0.6
SHH-204ENST00000441114 GVINP1Q7Z2Y8 2422 aa18.83■□□□□ 0.6
SHH-204ENST00000441114 IGLON5A6NGN9 336 aa18.82■□□□□ 0.6
SHH-204ENST00000441114 UPK3BL1B0FP48 263 aa18.82■□□□□ 0.6
SHH-204ENST00000441114 UPK3BL2E5RIL1 263 aa18.82■□□□□ 0.6
SHH-204ENST00000441114 SPINT1O43278 529 aa18.82■□□□□ 0.6
SHH-204ENST00000441114 MMP20O60882 483 aa18.82■□□□□ 0.6
SHH-204ENST00000441114 PAK4O96013 591 aaPredicted RBP18.82■□□□□ 0.6
SHH-204ENST00000441114 WNT1P04628 370 aa18.82■□□□□ 0.6
SHH-204ENST00000441114 HLA-DQB2P05538 268 aa18.82■□□□□ 0.6
SHH-204ENST00000441114 TGM2P21980 687 aa18.82■□□□□ 0.6
SHH-204ENST00000441114 CD38P28907 300 aa18.82■□□□□ 0.6
SHH-204ENST00000441114 ID4P47928 161 aa18.82■□□□□ 0.6
SHH-204ENST00000441114 NR2C2P49116 596 aa18.82■□□□□ 0.6
SHH-204ENST00000441114 C21orf59P57076 290 aa18.82■□□□□ 0.6
SHH-204ENST00000441114 COPS2P61201 443 aa18.82■□□□□ 0.6
SHH-204ENST00000441114 BNC1Q01954 994 aa18.82■□□□□ 0.6
SHH-204ENST00000441114 DSC2Q02487 901 aa18.82■□□□□ 0.6
SHH-204ENST00000441114 ZNF211Q13398 564 aaPredicted RBP18.82■□□□□ 0.6
SHH-204ENST00000441114 STAT4Q14765 748 aa18.82■□□□□ 0.6
SHH-204ENST00000441114 UGP2Q16851 508 aa18.82■□□□□ 0.6
SHH-204ENST00000441114 NAPEPLDQ6IQ20 393 aa18.82■□□□□ 0.6
SHH-204ENST00000441114 KIAA1161Q6NSJ0 714 aa18.82■□□□□ 0.6
SHH-204ENST00000441114 BRAT1Q6PJG6 821 aa18.82■□□□□ 0.6
SHH-204ENST00000441114 BZW1Q7L1Q6 419 aaKnown RBP18.82■□□□□ 0.6
SHH-204ENST00000441114 ZC3H18Q86VM9 953 aaKnown RBP18.82■□□□□ 0.6
SHH-204ENST00000441114 MINDY1Q8N5J2 469 aa18.82■□□□□ 0.6
SHH-204ENST00000441114 UBL4BQ8N7F7 174 aa18.82■□□□□ 0.6
SHH-204ENST00000441114 HCAR2Q8TDS4 363 aa18.82■□□□□ 0.6
SHH-204ENST00000441114 CXorf40AQ8TE69 158 aa18.82■□□□□ 0.6
SHH-204ENST00000441114 OLFM3Q96PB7 478 aa18.82■□□□□ 0.6
SHH-204ENST00000441114 SLC17A9Q9BYT1 436 aa18.82■□□□□ 0.6
SHH-204ENST00000441114 PCDH12Q9NPG4 1184 aa18.82■□□□□ 0.6
SHH-204ENST00000441114 DMTF1Q9Y222 760 aa18.82■□□□□ 0.6
SHH-204ENST00000441114 ANKRD6Q9Y2G4 727 aa18.82■□□□□ 0.6
SHH-204ENST00000441114 SNX11Q9Y5W9 270 aa18.82■□□□□ 0.6
SHH-204ENST00000441114 LRRK1Q38SD2 2015 aa18.82■□□□□ 0.6
SHH-204ENST00000441114 TSPAN11A1L157 253 aa18.81■□□□□ 0.6
SHH-204ENST00000441114 PRAMEF26H0Y7S4 382 aa18.81■□□□□ 0.6
SHH-204ENST00000441114 KCNK3O14649 394 aa18.81■□□□□ 0.6
SHH-204ENST00000441114 AREL1O15033 823 aa18.81■□□□□ 0.6
SHH-204ENST00000441114 PYGMP11217 842 aa18.81■□□□□ 0.6
SHH-204ENST00000441114 NUDT1P36639 197 aa18.81■□□□□ 0.6
SHH-204ENST00000441114 CETN2P41208 172 aa18.81■□□□□ 0.6
SHH-204ENST00000441114 GRIA4P48058 902 aa18.81■□□□□ 0.6
SHH-204ENST00000441114 FAM193AP78312 1265 aa18.81■□□□□ 0.6
SHH-204ENST00000441114 TRAF2Q12933 501 aa18.81■□□□□ 0.6
SHH-204ENST00000441114 ZBTB17Q13105 803 aa18.81■□□□□ 0.6
SHH-204ENST00000441114 SGCGQ13326 291 aa18.81■□□□□ 0.6
SHH-204ENST00000441114 PPP2R5EQ16537 467 aa18.81■□□□□ 0.6
SHH-204ENST00000441114 KIF19Q2TAC6 998 aa18.81■□□□□ 0.6
SHH-204ENST00000441114 TMEM259Q4ZIN3 620 aa18.81■□□□□ 0.6
SHH-204ENST00000441114 SLC45A4Q5BKX6 768 aa18.81■□□□□ 0.6
SHH-204ENST00000441114 ERAP2Q6P179 960 aa18.81■□□□□ 0.6
SHH-204ENST00000441114 FATE1Q969F0 183 aa18.81■□□□□ 0.6
SHH-204ENST00000441114 HERPUD2Q9BSE4 406 aa18.81■□□□□ 0.6
SHH-204ENST00000441114 OSBPL8Q9BZF1 889 aa18.81■□□□□ 0.6
SHH-204ENST00000441114 HAUS2Q9NVX0 235 aa18.81■□□□□ 0.6
SHH-204ENST00000441114 A8MX80 341 aa18.8■□□□□ 0.6
SHH-204ENST00000441114 MIF4GDA9UHW6 222 aaKnown RBP18.8■□□□□ 0.6
SHH-204ENST00000441114 TRAFD1O14545 582 aaPredicted RBP18.8■□□□□ 0.6
SHH-204ENST00000441114 SLC30A4O14863 429 aa18.8■□□□□ 0.6
SHH-204ENST00000441114 DDX3YO15523 660 aaKnown RBP18.8■□□□□ 0.6
SHH-204ENST00000441114 SDHBP21912 280 aa18.8■□□□□ 0.6
SHH-204ENST00000441114 HNRNPA2B1P22626 353 aaKnown RBP18.8■□□□□ 0.6
SHH-204ENST00000441114 AKT2P31751 481 aa18.8■□□□□ 0.6
SHH-204ENST00000441114 LIMK1P53667 647 aa18.8■□□□□ 0.6
SHH-204ENST00000441114 CLDN2P57739 230 aa18.8■□□□□ 0.6
SHH-204ENST00000441114 POLR2LP62875 67 aaKnown RBP18.8■□□□□ 0.6
SHH-204ENST00000441114 ELP6Q0PNE2 266 aa18.8■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms