RNA–Protein interactions for RNA: ENST00000439475.1

MCF2L-216, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 5

Gene MCF2L, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-216ENST00000439475 AMACRQ9UHK6 382 aa10.57□□□□□ -0.72
MCF2L-216ENST00000439475 APOBEC2Q9Y235 224 aaKnown RBP10.57□□□□□ -0.72
MCF2L-216ENST00000439475 CEP250Q9BV73 2442 aa10.57□□□□□ -0.72
MCF2L-216ENST00000439475 TMEM131Q92545 1883 aa10.56□□□□□ -0.72
MCF2L-216ENST00000439475 TSPAN11A1L157 253 aa10.56□□□□□ -0.72
MCF2L-216ENST00000439475 APOL1O14791 398 aa10.56□□□□□ -0.72
MCF2L-216ENST00000439475 LZTS3O60299 673 aaPredicted RBP10.56□□□□□ -0.72
MCF2L-216ENST00000439475 MMP20O60882 483 aa10.56□□□□□ -0.72
MCF2L-216ENST00000439475 SOCS5O75159 536 aa10.56□□□□□ -0.72
MCF2L-216ENST00000439475 NDUFA10O95299 355 aa10.56□□□□□ -0.72
MCF2L-216ENST00000439475 KRT1P04264 644 aa10.56□□□□□ -0.72
MCF2L-216ENST00000439475 COMTP21964 271 aa10.56□□□□□ -0.72
MCF2L-216ENST00000439475 GARSP41250 739 aaKnown RBP10.56□□□□□ -0.72
MCF2L-216ENST00000439475 YPEL5P62699 121 aa10.56□□□□□ -0.72
MCF2L-216ENST00000439475 GALNT2Q10471 571 aa10.56□□□□□ -0.72
MCF2L-216ENST00000439475 PTK2BQ14289 1009 aa10.56□□□□□ -0.72
MCF2L-216ENST00000439475 PRAMEF14Q5SWL7 426 aa10.56□□□□□ -0.72
MCF2L-216ENST00000439475 KYAT3Q6YP21 454 aaKnown RBP10.56□□□□□ -0.72
MCF2L-216ENST00000439475 Q6ZSR6 202 aa10.56□□□□□ -0.72
MCF2L-216ENST00000439475 ABI3BPQ7Z7G0 1075 aa10.56□□□□□ -0.72
MCF2L-216ENST00000439475 TP53INP2Q8IXH6 220 aa10.56□□□□□ -0.72
MCF2L-216ENST00000439475 TMEM145Q8NBT3 493 aa10.56□□□□□ -0.72
MCF2L-216ENST00000439475 CCNYQ8ND76 341 aa10.56□□□□□ -0.72
MCF2L-216ENST00000439475 RAPGEF5Q92565 580 aa10.56□□□□□ -0.72
MCF2L-216ENST00000439475 FAF2Q96CS3 445 aa10.56□□□□□ -0.72
MCF2L-216ENST00000439475 IFT43Q96FT9 208 aa10.56□□□□□ -0.72
MCF2L-216ENST00000439475 TSGA13Q96PP4 275 aa10.56□□□□□ -0.72
MCF2L-216ENST00000439475 POLR1EQ9GZS1 481 aaKnown RBP10.56□□□□□ -0.72
MCF2L-216ENST00000439475 FZD3Q9NPG1 666 aa10.56□□□□□ -0.72
MCF2L-216ENST00000439475 KLHL11Q9NVR0 708 aa10.56□□□□□ -0.72
MCF2L-216ENST00000439475 KCTD5Q9NXV2 234 aa10.56□□□□□ -0.72
MCF2L-216ENST00000439475 ANGPTL2Q9UKU9 493 aa10.56□□□□□ -0.72
MCF2L-216ENST00000439475 PCOLCE2Q9UKZ9 415 aa10.56□□□□□ -0.72
MCF2L-216ENST00000439475 PHTF1Q9UMS5 762 aa10.56□□□□□ -0.72
MCF2L-216ENST00000439475 ATP8A1Q9Y2Q0 1164 aa10.56□□□□□ -0.72
MCF2L-216ENST00000439475 ALG6Q9Y672 507 aa10.56□□□□□ -0.72
MCF2L-216ENST00000439475 VPS13AQ96RL7 3174 aa10.56□□□□□ -0.72
MCF2L-216ENST00000439475 CABIN1Q9Y6J0 2220 aa10.56□□□□□ -0.72
MCF2L-216ENST00000439475 SHROOM3Q8TF72 1996 aa10.56□□□□□ -0.72
MCF2L-216ENST00000439475 KNL1Q8NG31 2342 aa10.55□□□□□ -0.72
MCF2L-216ENST00000439475 SPAARA0A1B0GVQ0 90 aa10.55□□□□□ -0.72
MCF2L-216ENST00000439475 NEMP2A6NFY4 417 aa10.55□□□□□ -0.72
MCF2L-216ENST00000439475 H3BM21 787 aa10.55□□□□□ -0.72
MCF2L-216ENST00000439475 RIOK3O14730 519 aaKnown RBP10.55□□□□□ -0.72
MCF2L-216ENST00000439475 PPP1R12AO14974 1030 aaPredicted RBP10.55□□□□□ -0.72
MCF2L-216ENST00000439475 MATN3O15232 486 aa10.55□□□□□ -0.72
MCF2L-216ENST00000439475 TNFSF14O43557 240 aa10.55□□□□□ -0.72
MCF2L-216ENST00000439475 PSTPIP1O43586 416 aa10.55□□□□□ -0.72
MCF2L-216ENST00000439475 BUB1BO60566 1050 aaPredicted RBP10.55□□□□□ -0.72
MCF2L-216ENST00000439475 CYP2A6P11509 494 aaPredicted RBP10.55□□□□□ -0.72
MCF2L-216ENST00000439475 CA4P22748 312 aa10.55□□□□□ -0.72
MCF2L-216ENST00000439475 EPHA8P29322 1005 aaPredicted RBP10.55□□□□□ -0.72
MCF2L-216ENST00000439475 PMLP29590 882 aa10.55□□□□□ -0.72
MCF2L-216ENST00000439475 CDC25BP30305 580 aa10.55□□□□□ -0.72
MCF2L-216ENST00000439475 CETN2P41208 172 aa10.55□□□□□ -0.72
MCF2L-216ENST00000439475 RGRP47804 291 aa10.55□□□□□ -0.72
MCF2L-216ENST00000439475 THOP1P52888 689 aa10.55□□□□□ -0.72
MCF2L-216ENST00000439475 CLDN2P57739 230 aa10.55□□□□□ -0.72
MCF2L-216ENST00000439475 FAM193AP78312 1265 aa10.55□□□□□ -0.72
MCF2L-216ENST00000439475 IL9RQ01113 521 aa10.55□□□□□ -0.72
MCF2L-216ENST00000439475 FOXC1Q12948 553 aa10.55□□□□□ -0.72
MCF2L-216ENST00000439475 TFDP2Q14188 446 aa10.55□□□□□ -0.72
MCF2L-216ENST00000439475 PTAR1Q7Z6K3 402 aaPredicted RBP10.55□□□□□ -0.72
MCF2L-216ENST00000439475 GLRX5Q86SX6 157 aa10.55□□□□□ -0.72
MCF2L-216ENST00000439475 SPATS2Q86XZ4 545 aaKnown RBP10.55□□□□□ -0.72
MCF2L-216ENST00000439475 CPNE8Q86YQ8 564 aa10.55□□□□□ -0.72
MCF2L-216ENST00000439475 RFX6Q8HWS3 928 aa10.55□□□□□ -0.72
MCF2L-216ENST00000439475 CCDC13Q8IYE1 715 aa10.55□□□□□ -0.72
MCF2L-216ENST00000439475 TEX26Q8N6G2 289 aa10.55□□□□□ -0.72
MCF2L-216ENST00000439475 OR13H1Q8NG92 308 aa10.55□□□□□ -0.72
MCF2L-216ENST00000439475 PDCD6IPQ8WUM4 868 aaKnown RBP10.55□□□□□ -0.72
MCF2L-216ENST00000439475 FATE1Q969F0 183 aa10.55□□□□□ -0.72
MCF2L-216ENST00000439475 RNF25Q96BH1 459 aaPredicted RBP10.55□□□□□ -0.72
MCF2L-216ENST00000439475 HDAC11Q96DB2 347 aa10.55□□□□□ -0.72
MCF2L-216ENST00000439475 ECHDC3Q96DC8 303 aa10.55□□□□□ -0.72
MCF2L-216ENST00000439475 BMFQ96LC9 184 aa10.55□□□□□ -0.72
MCF2L-216ENST00000439475 CAMK1GQ96NX5 476 aa10.55□□□□□ -0.72
MCF2L-216ENST00000439475 BAG1Q99933 345 aaPredicted RBP10.55□□□□□ -0.72
MCF2L-216ENST00000439475 MGME1Q9BQP7 344 aa10.55□□□□□ -0.72
MCF2L-216ENST00000439475 WRAP53Q9BUR4 548 aaKnown RBP10.55□□□□□ -0.72
MCF2L-216ENST00000439475 BRD8Q9H0E9 1235 aa10.55□□□□□ -0.72
MCF2L-216ENST00000439475 NT5MQ9NPB1 228 aa10.55□□□□□ -0.72
MCF2L-216ENST00000439475 PCDH12Q9NPG4 1184 aa10.55□□□□□ -0.72
MCF2L-216ENST00000439475 RBM22Q9NW64 420 aaKnown RBP eCLIP10.55□□□□□ -0.72
MCF2L-216ENST00000439475 ITM2BQ9Y287 266 aa10.55□□□□□ -0.72
MCF2L-216ENST00000439475 CA5BQ9Y2D0 317 aa10.55□□□□□ -0.72
MCF2L-216ENST00000439475 ANKRD36A6QL64 1941 aa10.54□□□□□ -0.72
MCF2L-216ENST00000439475 SOWAHDA6NJG2 315 aa10.54□□□□□ -0.72
MCF2L-216ENST00000439475 MUSKO15146 869 aa10.54□□□□□ -0.72
MCF2L-216ENST00000439475 MFSD11O43934 449 aa10.54□□□□□ -0.72
MCF2L-216ENST00000439475 CBFA2T3O75081 653 aa10.54□□□□□ -0.72
MCF2L-216ENST00000439475 ZRANB2O95218 330 aaKnown RBP eCLIP10.54□□□□□ -0.72
MCF2L-216ENST00000439475 LDOC1O95751 146 aaPredicted RBP10.54□□□□□ -0.72
MCF2L-216ENST00000439475 PEX11BO96011 259 aa10.54□□□□□ -0.72
MCF2L-216ENST00000439475 ALPPL2P10696 532 aa10.54□□□□□ -0.72
MCF2L-216ENST00000439475 CDK4P11802 303 aa10.54□□□□□ -0.72
MCF2L-216ENST00000439475 CCNB1P14635 433 aa10.54□□□□□ -0.72
MCF2L-216ENST00000439475 ITIH2P19823 946 aa10.54□□□□□ -0.72
MCF2L-216ENST00000439475 CR2P20023 1033 aa10.54□□□□□ -0.72
MCF2L-216ENST00000439475 FECHP22830 423 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 95.3 ms