RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 C9orf64Q5T6V5 341 aa12.34□□□□□ -0.43
PTPRF-208ENST00000437607 NCEH1Q6PIU2 408 aa12.34□□□□□ -0.43
PTPRF-208ENST00000437607 NPNTQ6UXI9 565 aa12.34□□□□□ -0.43
PTPRF-208ENST00000437607 TFAP2DQ7Z6R9 452 aa12.34□□□□□ -0.43
PTPRF-208ENST00000437607 CIR1Q86X95 450 aaPredicted RBP12.34□□□□□ -0.43
PTPRF-208ENST00000437607 CDKL3Q8IVW4 592 aaPredicted RBP12.34□□□□□ -0.43
PTPRF-208ENST00000437607 MFN1Q8IWA4 741 aa12.34□□□□□ -0.43
PTPRF-208ENST00000437607 CCDC117Q8IWD4 279 aaPredicted RBP12.34□□□□□ -0.43
PTPRF-208ENST00000437607 ZNF683Q8IZ20 524 aa12.34□□□□□ -0.43
PTPRF-208ENST00000437607 LZTR1Q8N653 840 aa12.34□□□□□ -0.43
PTPRF-208ENST00000437607 PRELID2Q8N945 189 aa12.34□□□□□ -0.43
PTPRF-208ENST00000437607 GRK7Q8WTQ7 553 aa12.34□□□□□ -0.43
PTPRF-208ENST00000437607 C1orf54Q8WWF1 131 aa12.34□□□□□ -0.43
PTPRF-208ENST00000437607 MAGOHBQ96A72 148 aaKnown RBP12.34□□□□□ -0.43
PTPRF-208ENST00000437607 FAM129BQ96TA1 746 aa12.34□□□□□ -0.43
PTPRF-208ENST00000437607 DDX47Q9H0S4 455 aaKnown RBP12.34□□□□□ -0.43
PTPRF-208ENST00000437607 NEUROG2Q9H2A3 272 aa12.34□□□□□ -0.43
PTPRF-208ENST00000437607 ETNK2Q9NVF9 386 aa12.34□□□□□ -0.43
PTPRF-208ENST00000437607 TMEM248Q9NWD8 314 aa12.34□□□□□ -0.43
PTPRF-208ENST00000437607 MPP6Q9NZW5 540 aa12.34□□□□□ -0.43
PTPRF-208ENST00000437607 SCML1Q9UN30 329 aa12.34□□□□□ -0.43
PTPRF-208ENST00000437607 R3HDM2Q9Y2K5 976 aaKnown RBP12.34□□□□□ -0.43
PTPRF-208ENST00000437607 A0A087WV48 116 aa12.33□□□□□ -0.44
PTPRF-208ENST00000437607 A0A1W2PR77 199 aa12.33□□□□□ -0.44
PTPRF-208ENST00000437607 WASH4PA8MWX3 477 aa12.33□□□□□ -0.44
PTPRF-208ENST00000437607 TTC34A8MYJ7 566 aa12.33□□□□□ -0.44
PTPRF-208ENST00000437607 H7C0C1 242 aa12.33□□□□□ -0.44
PTPRF-208ENST00000437607 PLK4O00444 970 aa12.33□□□□□ -0.44
PTPRF-208ENST00000437607 LIASO43766 372 aa12.33□□□□□ -0.44
PTPRF-208ENST00000437607 ZNF189O75820 626 aaPredicted RBP12.33□□□□□ -0.44
PTPRF-208ENST00000437607 GAS8O95995 478 aa12.33□□□□□ -0.44
PTPRF-208ENST00000437607 MX2P20592 715 aa12.33□□□□□ -0.44
PTPRF-208ENST00000437607 ATP5OP48047 213 aa12.33□□□□□ -0.44
PTPRF-208ENST00000437607 CDH4P55283 916 aa12.33□□□□□ -0.44
PTPRF-208ENST00000437607 EIF3EP60228 445 aaKnown RBP12.33□□□□□ -0.44
PTPRF-208ENST00000437607 GBE1Q04446 702 aa12.33□□□□□ -0.44
PTPRF-208ENST00000437607 PAFAH1B3Q15102 231 aaKnown RBP12.33□□□□□ -0.44
PTPRF-208ENST00000437607 PDK1Q15118 436 aa12.33□□□□□ -0.44
PTPRF-208ENST00000437607 CCNG2Q16589 344 aa12.33□□□□□ -0.44
PTPRF-208ENST00000437607 PITRM1Q5JRX3 1037 aa12.33□□□□□ -0.44
PTPRF-208ENST00000437607 MMAAQ8IVH4 418 aaKnown RBP12.33□□□□□ -0.44
PTPRF-208ENST00000437607 CFAP52Q8N1V2 620 aa12.33□□□□□ -0.44
PTPRF-208ENST00000437607 CARNMT1Q8N4J0 409 aa12.33□□□□□ -0.44
PTPRF-208ENST00000437607 ATPAF2Q8N5M1 289 aa12.33□□□□□ -0.44
PTPRF-208ENST00000437607 AADATQ8N5Z0 425 aa12.33□□□□□ -0.44
PTPRF-208ENST00000437607 NPWQ8N729 165 aa12.33□□□□□ -0.44
PTPRF-208ENST00000437607 PDCD7Q8N8D1 485 aaKnown RBP12.33□□□□□ -0.44
PTPRF-208ENST00000437607 QKIQ96PU8 341 aaKnown RBP eCLIP12.33□□□□□ -0.44
PTPRF-208ENST00000437607 KRT12Q99456 494 aa12.33□□□□□ -0.44
PTPRF-208ENST00000437607 ELF4Q99607 663 aaPredicted RBP12.33□□□□□ -0.44
PTPRF-208ENST00000437607 FAM118BQ9BPY3 351 aa12.33□□□□□ -0.44
PTPRF-208ENST00000437607 FERMT1Q9BQL6 677 aa12.33□□□□□ -0.44
PTPRF-208ENST00000437607 ACE2Q9BYF1 805 aaPredicted RBP12.33□□□□□ -0.44
PTPRF-208ENST00000437607 RETREG1Q9H6L5 497 aa12.33□□□□□ -0.44
PTPRF-208ENST00000437607 DTLQ9NZJ0 730 aa12.33□□□□□ -0.44
PTPRF-208ENST00000437607 FTSJ1Q9UET6 329 aa12.33□□□□□ -0.44
PTPRF-208ENST00000437607 SLCO3A1Q9UIG8 710 aa12.33□□□□□ -0.44
PTPRF-208ENST00000437607 ERVW-1Q9UQF0 538 aa12.33□□□□□ -0.44
PTPRF-208ENST00000437607 NCKAP1Q9Y2A7 1128 aa12.33□□□□□ -0.44
PTPRF-208ENST00000437607 MFHAS1Q9Y4C4 1052 aa12.33□□□□□ -0.44
PTPRF-208ENST00000437607 CHD5Q8TDI0 1954 aa12.32□□□□□ -0.44
PTPRF-208ENST00000437607 CFAP69A5D8W1 941 aa12.32□□□□□ -0.44
PTPRF-208ENST00000437607 EFCAB8A8MWE9 144 aa12.32□□□□□ -0.44
PTPRF-208ENST00000437607 DFNA5O60443 496 aa12.32□□□□□ -0.44
PTPRF-208ENST00000437607 RAMP2O60895 175 aa12.32□□□□□ -0.44
PTPRF-208ENST00000437607 CLDN11O75508 207 aa12.32□□□□□ -0.44
PTPRF-208ENST00000437607 RNASEH2AO75792 299 aaKnown RBP12.32□□□□□ -0.44
PTPRF-208ENST00000437607 MAP3K6O95382 1288 aa12.32□□□□□ -0.44
PTPRF-208ENST00000437607 ECEL1O95672 775 aa12.32□□□□□ -0.44
PTPRF-208ENST00000437607 ASLP04424 464 aa12.32□□□□□ -0.44
PTPRF-208ENST00000437607 RHOCP08134 193 aa12.32□□□□□ -0.44
PTPRF-208ENST00000437607 RBP3P10745 1247 aa12.32□□□□□ -0.44
PTPRF-208ENST00000437607 IRAK1P51617 712 aa12.32□□□□□ -0.44
PTPRF-208ENST00000437607 TUBB4BP68371 445 aa12.32□□□□□ -0.44
PTPRF-208ENST00000437607 DNAJC3Q13217 504 aa12.32□□□□□ -0.44
PTPRF-208ENST00000437607 SNX1Q13596 522 aa12.32□□□□□ -0.44
PTPRF-208ENST00000437607 CDH18Q13634 790 aa12.32□□□□□ -0.44
PTPRF-208ENST00000437607 DHX34Q14147 1143 aaKnown RBP12.32□□□□□ -0.44
PTPRF-208ENST00000437607 ALFQ53S48 1182 aa12.32□□□□□ -0.44
PTPRF-208ENST00000437607 C6orf118Q5T5N4 469 aa12.32□□□□□ -0.44
PTPRF-208ENST00000437607 DRICH1Q6PGQ1 229 aaPredicted RBP12.32□□□□□ -0.44
PTPRF-208ENST00000437607 CCDC137Q6PK04 289 aaKnown RBP12.32□□□□□ -0.44
PTPRF-208ENST00000437607 ZC3H18Q86VM9 953 aaKnown RBP12.32□□□□□ -0.44
PTPRF-208ENST00000437607 NLRP14Q86W24 1093 aa12.32□□□□□ -0.44
PTPRF-208ENST00000437607 ZNF354CQ86Y25 554 aa12.32□□□□□ -0.44
PTPRF-208ENST00000437607 APCDD1Q8J025 514 aa12.32□□□□□ -0.44
PTPRF-208ENST00000437607 MMGT1Q8N4V1 131 aa12.32□□□□□ -0.44
PTPRF-208ENST00000437607 ZNF557Q8N988 423 aaPredicted RBP12.32□□□□□ -0.44
PTPRF-208ENST00000437607 KDM1BQ8NB78 822 aa12.32□□□□□ -0.44
PTPRF-208ENST00000437607 LRRN4CLQ8ND94 238 aa12.32□□□□□ -0.44
PTPRF-208ENST00000437607 OR2T34Q8NGX1 318 aa12.32□□□□□ -0.44
PTPRF-208ENST00000437607 SAP25Q8TEE9 199 aa12.32□□□□□ -0.44
PTPRF-208ENST00000437607 GANCQ8TET4 914 aa12.32□□□□□ -0.44
PTPRF-208ENST00000437607 PTPRN2Q92932 1015 aa12.32□□□□□ -0.44
PTPRF-208ENST00000437607 CELF6Q96J87 481 aaKnown RBP12.32□□□□□ -0.44
PTPRF-208ENST00000437607 LRRC19Q9H756 370 aa12.32□□□□□ -0.44
PTPRF-208ENST00000437607 DNPEPQ9ULA0 475 aa12.32□□□□□ -0.44
PTPRF-208ENST00000437607 ASH1LQ9NR48 2969 aaKnown RBP12.32□□□□□ -0.44
PTPRF-208ENST00000437607 KIF26BQ2KJY2 2108 aa12.31□□□□□ -0.44
PTPRF-208ENST00000437607 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms