RNA–Protein interactions for RNA: ENST00000437340.5

CPNE1-216, Transcript of copine 1, humanhuman

TSL 1 (best)

Gene CPNE1, Length 1,755 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-216ENST00000437340 OLFM2O95897 454 aa25.89■■□□□ 1.73
CPNE1-216ENST00000437340 IRF1P10914 325 aa25.89■■□□□ 1.73
CPNE1-216ENST00000437340 SGSHP51688 502 aa25.89■■□□□ 1.73
CPNE1-216ENST00000437340 AQP5P55064 265 aa25.89■■□□□ 1.73
CPNE1-216ENST00000437340 ABCE1P61221 599 aaKnown RBP25.89■■□□□ 1.73
CPNE1-216ENST00000437340 KRT72Q14CN4 511 aa25.89■■□□□ 1.73
CPNE1-216ENST00000437340 TNS4Q8IZW8 715 aa25.89■■□□□ 1.73
CPNE1-216ENST00000437340 AUTS2Q8WXX7 1259 aa25.89■■□□□ 1.73
CPNE1-216ENST00000437340 TMEM237Q96Q45 408 aa25.89■■□□□ 1.73
CPNE1-216ENST00000437340 TASP1Q9H6P5 420 aa25.89■■□□□ 1.73
CPNE1-216ENST00000437340 LNPEPQ9UIQ6 1025 aa25.89■■□□□ 1.73
CPNE1-216ENST00000437340 PCDHB12Q9Y5F1 795 aa25.89■■□□□ 1.73
CPNE1-216ENST00000437340 NUMBLQ9Y6R0 609 aa25.89■■□□□ 1.73
CPNE1-216ENST00000437340 LAMA2P24043 3122 aaKnown RBP25.88■■□□□ 1.73
CPNE1-216ENST00000437340 TMEM114B3SHH9 223 aa25.88■■□□□ 1.73
CPNE1-216ENST00000437340 PHGDHO43175 533 aaKnown RBP25.88■■□□□ 1.73
CPNE1-216ENST00000437340 HNRNPH1P31943 449 aaKnown RBP25.88■■□□□ 1.73
CPNE1-216ENST00000437340 CLCN5P51795 746 aa25.88■■□□□ 1.73
CPNE1-216ENST00000437340 ITGA9Q13797 1035 aa25.88■■□□□ 1.73
CPNE1-216ENST00000437340 HSF5Q4G112 596 aaPredicted RBP25.88■■□□□ 1.73
CPNE1-216ENST00000437340 DDX51Q8N8A6 666 aaKnown RBP eCLIP25.88■■□□□ 1.73
CPNE1-216ENST00000437340 WBP2Q969T9 261 aa25.88■■□□□ 1.73
CPNE1-216ENST00000437340 TRIB3Q96RU7 358 aa25.88■■□□□ 1.73
CPNE1-216ENST00000437340 ZBED2Q9BTP6 218 aa25.88■■□□□ 1.73
CPNE1-216ENST00000437340 HAO1Q9UJM8 370 aa25.88■■□□□ 1.73
CPNE1-216ENST00000437340 DNAJC16Q9Y2G8 782 aa25.88■■□□□ 1.73
CPNE1-216ENST00000437340 ARIH1Q9Y4X5 557 aaPredicted RBP25.88■■□□□ 1.73
CPNE1-216ENST00000437340 PLXNA4Q9HCM2 1894 aa25.88■■□□□ 1.73
CPNE1-216ENST00000437340 A0A087X1B8 175 aa25.87■■□□□ 1.73
CPNE1-216ENST00000437340 TRIM13O60858 407 aa25.87■■□□□ 1.73
CPNE1-216ENST00000437340 NDST3O95803 873 aa25.87■■□□□ 1.73
CPNE1-216ENST00000437340 LINC00271P0C7V0 271 aa25.87■■□□□ 1.73
CPNE1-216ENST00000437340 SAT1P21673 171 aa25.87■■□□□ 1.73
CPNE1-216ENST00000437340 SMAD3P84022 425 aaKnown RBP25.87■■□□□ 1.73
CPNE1-216ENST00000437340 TSNAXIP1Q2TAA8 658 aa25.87■■□□□ 1.73
CPNE1-216ENST00000437340 COL13A1Q5TAT6 717 aaPredicted RBP25.87■■□□□ 1.73
CPNE1-216ENST00000437340 MFSD6LQ8IWD5 586 aa25.87■■□□□ 1.73
CPNE1-216ENST00000437340 PARP9Q8IXQ6 854 aa25.87■■□□□ 1.73
CPNE1-216ENST00000437340 BRSK1Q8TDC3 778 aa25.87■■□□□ 1.73
CPNE1-216ENST00000437340 RAB3IPQ96QF0 476 aaPredicted RBP25.87■■□□□ 1.73
CPNE1-216ENST00000437340 ZBP1Q9H171 429 aa25.87■■□□□ 1.73
CPNE1-216ENST00000437340 IL21Q9HBE4 155 aa25.87■■□□□ 1.73
CPNE1-216ENST00000437340 ZNF334Q9HCZ1 680 aaPredicted RBP25.87■■□□□ 1.73
CPNE1-216ENST00000437340 FBXO6Q9NRD1 293 aaPredicted RBP25.87■■□□□ 1.73
CPNE1-216ENST00000437340 OXSMQ9NWU1 459 aa25.87■■□□□ 1.73
CPNE1-216ENST00000437340 SLC4A7Q9Y6M7 1214 aa25.87■■□□□ 1.73
CPNE1-216ENST00000437340 ANAPC1Q9H1A4 1944 aa25.87■■□□□ 1.73
CPNE1-216ENST00000437340 KITP10721 976 aa25.87■■□□□ 1.73
CPNE1-216ENST00000437340 CR2P20023 1033 aa25.87■■□□□ 1.73
CPNE1-216ENST00000437340 PRAMEP78395 509 aa25.87■■□□□ 1.73
CPNE1-216ENST00000437340 CXorf57Q6NSI4 855 aaKnown RBP25.87■■□□□ 1.73
CPNE1-216ENST00000437340 ZYG11AQ6WRX3 759 aa25.87■■□□□ 1.73
CPNE1-216ENST00000437340 CILP2Q8IUL8 1156 aa25.87■■□□□ 1.73
CPNE1-216ENST00000437340 CENPLQ8N0S6 344 aaPredicted RBP25.87■■□□□ 1.73
CPNE1-216ENST00000437340 TMEM151AQ8N4L1 468 aa25.87■■□□□ 1.73
CPNE1-216ENST00000437340 KIF2BQ8N4N8 673 aa25.87■■□□□ 1.73
CPNE1-216ENST00000437340 ELMO2Q96JJ3 720 aa25.87■■□□□ 1.73
CPNE1-216ENST00000437340 SORT1Q99523 831 aa25.87■■□□□ 1.73
CPNE1-216ENST00000437340 LBHD1Q9BQE6 289 aaPredicted RBP25.87■■□□□ 1.73
CPNE1-216ENST00000437340 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP25.87■■□□□ 1.732e-16■■■■□ 24.6
CPNE1-216ENST00000437340 MARCOQ9UEW3 520 aaPredicted RBP25.87■■□□□ 1.73
CPNE1-216ENST00000437340 TRIM33Q9UPN9 1127 aa25.87■■□□□ 1.73
CPNE1-216ENST00000437340 INSIG1O15503 277 aa25.86■■□□□ 1.73
CPNE1-216ENST00000437340 TSPAN3O60637 253 aa25.86■■□□□ 1.73
CPNE1-216ENST00000437340 CCDC22O60826 627 aa25.86■■□□□ 1.73
CPNE1-216ENST00000437340 LYPLA1O75608 230 aaPredicted RBP25.86■■□□□ 1.73
CPNE1-216ENST00000437340 GJB3O75712 270 aa25.86■■□□□ 1.73
CPNE1-216ENST00000437340 CBX6O95503 412 aa25.86■■□□□ 1.73
CPNE1-216ENST00000437340 CTSAP10619 480 aa25.86■■□□□ 1.73
CPNE1-216ENST00000437340 KPNA2P52292 529 aaKnown RBP25.86■■□□□ 1.73
CPNE1-216ENST00000437340 SLC12A2P55011 1212 aa25.86■■□□□ 1.73
CPNE1-216ENST00000437340 RIPK1Q13546 671 aa25.86■■□□□ 1.73
CPNE1-216ENST00000437340 CEP97Q8IW35 865 aa25.86■■□□□ 1.73
CPNE1-216ENST00000437340 FIBCD1Q8N539 461 aa25.86■■□□□ 1.73
CPNE1-216ENST00000437340 SLC7A6OSQ96CW6 309 aaPredicted RBP25.86■■□□□ 1.73
CPNE1-216ENST00000437340 NOD2Q9HC29 1040 aa25.86■■□□□ 1.73
CPNE1-216ENST00000437340 TRPC7Q9HCX4 862 aa25.86■■□□□ 1.73
CPNE1-216ENST00000437340 SMPD4Q9NXE4 827 aa25.86■■□□□ 1.73
CPNE1-216ENST00000437340 RUVBL2Q9Y230 463 aaKnown RBP25.86■■□□□ 1.73
CPNE1-216ENST00000437340 INSL6Q9Y581 213 aa25.86■■□□□ 1.73
CPNE1-216ENST00000437340 GBF1Q92538 1859 aa25.85■■□□□ 1.73
CPNE1-216ENST00000437340 FCHO1O14526 889 aa25.85■■□□□ 1.73
CPNE1-216ENST00000437340 KLHL2O95198 593 aa25.85■■□□□ 1.73
CPNE1-216ENST00000437340 TAS2R39P59534 338 aa25.85■■□□□ 1.73
CPNE1-216ENST00000437340 NSUN2Q08J23 767 aaKnown RBP eCLIP25.85■■□□□ 1.73
CPNE1-216ENST00000437340 RNF219Q5W0B1 726 aaPredicted RBP25.85■■□□□ 1.73
CPNE1-216ENST00000437340 GPATCH11Q8N954 259 aa25.85■■□□□ 1.73
CPNE1-216ENST00000437340 HJURPQ8NCD3 748 aaPredicted RBP25.85■■□□□ 1.73
CPNE1-216ENST00000437340 STYXQ8WUJ0 223 aa25.85■■□□□ 1.73
CPNE1-216ENST00000437340 KCTD4Q8WVF5 259 aa25.85■■□□□ 1.73
CPNE1-216ENST00000437340 HDAC10Q969S8 669 aa25.85■■□□□ 1.73
CPNE1-216ENST00000437340 TSPAN17Q96FV3 270 aa25.85■■□□□ 1.73
CPNE1-216ENST00000437340 MUC3BQ9H195 1237 aa25.85■■□□□ 1.73
CPNE1-216ENST00000437340 C2orf71A6NGG8 1288 aa25.84■■□□□ 1.73
CPNE1-216ENST00000437340 GFRA2O00451 464 aa25.84■■□□□ 1.73
CPNE1-216ENST00000437340 GREM1O60565 184 aa25.84■■□□□ 1.73
CPNE1-216ENST00000437340 FGF18O76093 207 aa25.84■■□□□ 1.73
CPNE1-216ENST00000437340 C1RP00736 705 aa25.84■■□□□ 1.73
CPNE1-216ENST00000437340 ALOX15P16050 662 aaPredicted RBP25.84■■□□□ 1.73
CPNE1-216ENST00000437340 GLDCP23378 1020 aa25.84■■□□□ 1.73
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms