RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 PABPC4LP0CB38 370 aaKnown RBP7.23□□□□□ -1.25
VPS53-204ENST00000437048 HTR2AP28223 471 aa7.23□□□□□ -1.25
VPS53-204ENST00000437048 SETD6Q8TBK2 473 aa7.23□□□□□ -1.25
VPS53-204ENST00000437048 MYO19Q96H55 970 aa7.23□□□□□ -1.25
VPS53-204ENST00000437048 FRMD6Q96NE9 622 aa7.23□□□□□ -1.25
VPS53-204ENST00000437048 SEMA3GQ9NS98 782 aa7.23□□□□□ -1.25
VPS53-204ENST00000437048 NUFIP1Q9UHK0 495 aaKnown RBP7.23□□□□□ -1.25
VPS53-204ENST00000437048 TTLL8A6PVC2 850 aa7.23□□□□□ -1.25
VPS53-204ENST00000437048 NKRFO15226 690 aaKnown RBP eCLIP7.23□□□□□ -1.25
VPS53-204ENST00000437048 PRKYO43930 277 aa7.23□□□□□ -1.25
VPS53-204ENST00000437048 TCN1P20061 433 aaPredicted RBP7.23□□□□□ -1.25
VPS53-204ENST00000437048 SLC7A1P30825 629 aa7.23□□□□□ -1.25
VPS53-204ENST00000437048 SSTR3P32745 418 aaPredicted RBP7.23□□□□□ -1.25
VPS53-204ENST00000437048 GPSM2P81274 684 aa7.23□□□□□ -1.25
VPS53-204ENST00000437048 POU5F1Q01860 360 aaKnown RBP7.23□□□□□ -1.25
VPS53-204ENST00000437048 ALDH6A1Q02252 535 aaKnown RBP7.23□□□□□ -1.25
VPS53-204ENST00000437048 PYDC2Q56P42 97 aa7.23□□□□□ -1.25
VPS53-204ENST00000437048 C1orf189Q5VU69 101 aa7.23□□□□□ -1.25
VPS53-204ENST00000437048 ADNP2Q6IQ32 1131 aa7.23□□□□□ -1.25
VPS53-204ENST00000437048 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP7.23□□□□□ -1.25
VPS53-204ENST00000437048 KCTD1Q719H9 257 aa7.23□□□□□ -1.25
VPS53-204ENST00000437048 ZNF720Q7Z2F6 126 aa7.23□□□□□ -1.25
VPS53-204ENST00000437048 TRABD2AQ86V40 505 aa7.23□□□□□ -1.25
VPS53-204ENST00000437048 UBE2J2Q8N2K1 259 aa7.23□□□□□ -1.25
VPS53-204ENST00000437048 PABPC5Q96DU9 382 aaKnown RBP7.23□□□□□ -1.25
VPS53-204ENST00000437048 ZNF341Q9BYN7 854 aa7.23□□□□□ -1.25
VPS53-204ENST00000437048 C12orf4Q9NQ89 552 aa7.23□□□□□ -1.25
VPS53-204ENST00000437048 EIF2B3Q9NR50 452 aaKnown RBP7.23□□□□□ -1.25
VPS53-204ENST00000437048 AAASQ9NRG9 546 aa7.23□□□□□ -1.25
VPS53-204ENST00000437048 CCDC88CQ9P219 2028 aa7.23□□□□□ -1.25
VPS53-204ENST00000437048 SLC28A2O43868 658 aa7.23□□□□□ -1.25
VPS53-204ENST00000437048 GH2P01242 217 aa7.23□□□□□ -1.25
VPS53-204ENST00000437048 IFNA6P05013 189 aa7.23□□□□□ -1.25
VPS53-204ENST00000437048 AKR1B1P15121 316 aa7.23□□□□□ -1.25
VPS53-204ENST00000437048 SLC16A1P53985 500 aa7.23□□□□□ -1.25
VPS53-204ENST00000437048 PKNOX1P55347 436 aa7.23□□□□□ -1.25
VPS53-204ENST00000437048 PRKD1Q15139 912 aaPredicted RBP7.23□□□□□ -1.25
VPS53-204ENST00000437048 WRNIP1Q96S55 665 aa7.23□□□□□ -1.25
VPS53-204ENST00000437048 KCNH7Q9NS40 1196 aa7.23□□□□□ -1.25
VPS53-204ENST00000437048 USP17L10C9JJH3 530 aa7.23□□□□□ -1.25
VPS53-204ENST00000437048 KMOO15229 486 aa7.23□□□□□ -1.25
VPS53-204ENST00000437048 PRKAR2AP13861 404 aaKnown RBP7.23□□□□□ -1.25
VPS53-204ENST00000437048 GSTM3P21266 225 aa7.23□□□□□ -1.25
VPS53-204ENST00000437048 PTPAQ15257 358 aa7.23□□□□□ -1.25
VPS53-204ENST00000437048 ATG14Q6ZNE5 492 aa7.23□□□□□ -1.25
VPS53-204ENST00000437048 KDELC2Q7Z4H8 507 aa7.23□□□□□ -1.25
VPS53-204ENST00000437048 TMEM159Q96B96 161 aa7.23□□□□□ -1.25
VPS53-204ENST00000437048 MGME1Q9BQP7 344 aa7.23□□□□□ -1.25
VPS53-204ENST00000437048 C12orf65Q9H3J6 166 aaKnown RBP7.23□□□□□ -1.25
VPS53-204ENST00000437048 GABBR1Q9UBS5 961 aa7.23□□□□□ -1.25
VPS53-204ENST00000437048 F5H423 210 aaPredicted RBP7.22□□□□□ -1.25
VPS53-204ENST00000437048 PITPNM1O00562 1244 aa7.22□□□□□ -1.25
VPS53-204ENST00000437048 VAPBO95292 243 aa7.22□□□□□ -1.25
VPS53-204ENST00000437048 TWF1Q12792 350 aa7.22□□□□□ -1.25
VPS53-204ENST00000437048 C16orf86Q6ZW13 317 aa7.22□□□□□ -1.25
VPS53-204ENST00000437048 HERC6Q8IVU3 1022 aa7.22□□□□□ -1.25
VPS53-204ENST00000437048 MIPEPQ99797 713 aa7.22□□□□□ -1.25
VPS53-204ENST00000437048 FAM217BQ9NTX9 383 aaPredicted RBP7.22□□□□□ -1.25
VPS53-204ENST00000437048 CNOT11Q9UKZ1 510 aaKnown RBP7.22□□□□□ -1.25
VPS53-204ENST00000437048 SIK3Q9Y2K2 1263 aa7.22□□□□□ -1.25
VPS53-204ENST00000437048 HSPE1-MOB4S4R3N1 261 aa7.22□□□□□ -1.25
VPS53-204ENST00000437048 DPYSL4O14531 572 aa7.22□□□□□ -1.25
VPS53-204ENST00000437048 TPST1O60507 370 aa7.22□□□□□ -1.25
VPS53-204ENST00000437048 LTA4HP09960 611 aaKnown RBP7.22□□□□□ -1.25
VPS53-204ENST00000437048 QRICH1Q2TAL8 776 aa7.22□□□□□ -1.25
VPS53-204ENST00000437048 PLD6Q8N2A8 252 aaKnown RBP7.22□□□□□ -1.25
VPS53-204ENST00000437048 TMEM86AQ8N2M4 240 aa7.22□□□□□ -1.25
VPS53-204ENST00000437048 TBC1D15Q8TC07 691 aa7.22□□□□□ -1.25
VPS53-204ENST00000437048 DNAJA4Q8WW22 397 aaPredicted RBP7.22□□□□□ -1.25
VPS53-204ENST00000437048 CELF4Q9BZC1 486 aaKnown RBP7.22□□□□□ -1.25
VPS53-204ENST00000437048 CST11Q9H112 138 aa7.22□□□□□ -1.25
VPS53-204ENST00000437048 KRT36O76013 467 aa7.22□□□□□ -1.25
VPS53-204ENST00000437048 HIST1H2ABP04908 130 aa7.22□□□□□ -1.25
VPS53-204ENST00000437048 BBS12Q6ZW61 710 aa7.22□□□□□ -1.25
VPS53-204ENST00000437048 HIST3H2AQ7L7L0 130 aa7.22□□□□□ -1.25
VPS53-204ENST00000437048 UNC93AQ86WB7 457 aa7.22□□□□□ -1.25
VPS53-204ENST00000437048 HIST1H2ACQ93077 130 aa7.22□□□□□ -1.25
VPS53-204ENST00000437048 ZNF512Q96ME7 567 aaPredicted RBP7.22□□□□□ -1.25
VPS53-204ENST00000437048 EVA1BQ9NVM1 165 aa7.22□□□□□ -1.25
VPS53-204ENST00000437048 FAM189A1O60320 539 aa7.22□□□□□ -1.25
VPS53-204ENST00000437048 PGDP52209 483 aa7.22□□□□□ -1.25
VPS53-204ENST00000437048 SRP68Q9UHB9 627 aaKnown RBP7.22□□□□□ -1.25
VPS53-204ENST00000437048 TFR2Q9UP52 801 aa7.22□□□□□ -1.25
VPS53-204ENST00000437048 MYMKA6NI61 221 aa7.22□□□□□ -1.25
VPS53-204ENST00000437048 FCER2P06734 321 aa7.22□□□□□ -1.25
VPS53-204ENST00000437048 CYP2A6P11509 494 aaPredicted RBP7.22□□□□□ -1.25
VPS53-204ENST00000437048 SLC15A1P46059 708 aa7.22□□□□□ -1.25
VPS53-204ENST00000437048 OR14K1Q8NGZ2 314 aa7.22□□□□□ -1.25
VPS53-204ENST00000437048 RASGRP4Q8TDF6 673 aa7.22□□□□□ -1.25
VPS53-204ENST00000437048 SEPT5Q99719 369 aaPredicted RBP7.22□□□□□ -1.25
VPS53-204ENST00000437048 ACE2Q9BYF1 805 aaPredicted RBP7.22□□□□□ -1.25
VPS53-204ENST00000437048 WDCPQ9H6R7 721 aa7.22□□□□□ -1.25
VPS53-204ENST00000437048 BTBD19C9JJ37 291 aa7.22□□□□□ -1.25
VPS53-204ENST00000437048 EIF1AYO14602 144 aaKnown RBP7.22□□□□□ -1.25
VPS53-204ENST00000437048 CD72P21854 359 aa7.22□□□□□ -1.25
VPS53-204ENST00000437048 EIF1AXP47813 144 aaKnown RBP7.22□□□□□ -1.25
VPS53-204ENST00000437048 ERVK-9P63128 1117 aa7.22□□□□□ -1.25
VPS53-204ENST00000437048 AUHQ13825 339 aaKnown RBP7.22□□□□□ -1.25
VPS53-204ENST00000437048 ARHGAP15Q53QZ3 475 aa7.22□□□□□ -1.25
VPS53-204ENST00000437048 TATDN1Q6P1N9 297 aa7.22□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms