RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 SMARCAL1Q9NZC9 954 aa12.54□□□□□ -0.4
USP40-205ENST00000430158 PPIL1Q9Y3C6 166 aa12.54□□□□□ -0.4
USP40-205ENST00000430158 PCDHGC4Q9Y5F7 938 aa12.54□□□□□ -0.4
USP40-205ENST00000430158 FADS3Q9Y5Q0 445 aa12.54□□□□□ -0.4
USP40-205ENST00000430158 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP12.53□□□□□ -0.4
USP40-205ENST00000430158 C5orf60A6NFR6 353 aa12.53□□□□□ -0.4
USP40-205ENST00000430158 METTL12A8MUP2 240 aa12.53□□□□□ -0.4
USP40-205ENST00000430158 AP1G1O43747 822 aa12.53□□□□□ -0.4
USP40-205ENST00000430158 SOCS5O75159 536 aa12.53□□□□□ -0.4
USP40-205ENST00000430158 SEMA4FO95754 770 aa12.53□□□□□ -0.4
USP40-205ENST00000430158 IGHV4-34P06331 123 aa12.53□□□□□ -0.4
USP40-205ENST00000430158 PDHA1P08559 390 aa12.53□□□□□ -0.4
USP40-205ENST00000430158 ITIH2P19823 946 aa12.53□□□□□ -0.4
USP40-205ENST00000430158 GDF10P55107 478 aa12.53□□□□□ -0.4
USP40-205ENST00000430158 SIM2Q14190 667 aaPredicted RBP12.53□□□□□ -0.4
USP40-205ENST00000430158 CYP1B1Q16678 543 aa12.53□□□□□ -0.4
USP40-205ENST00000430158 SPDYCQ5MJ68 293 aa12.53□□□□□ -0.4
USP40-205ENST00000430158 DARS2Q6PI48 645 aaKnown RBP12.53□□□□□ -0.4
USP40-205ENST00000430158 ZC3H14Q6PJT7 736 aaKnown RBP12.53□□□□□ -0.4
USP40-205ENST00000430158 KDELC1Q6UW63 502 aa12.53□□□□□ -0.4
USP40-205ENST00000430158 SLC36A4Q6YBV0 504 aa12.53□□□□□ -0.4
USP40-205ENST00000430158 C11orf74Q86VG3 221 aa12.53□□□□□ -0.4
USP40-205ENST00000430158 CREG2Q8IUH2 290 aa12.53□□□□□ -0.4
USP40-205ENST00000430158 CADM4Q8NFZ8 388 aa12.53□□□□□ -0.4
USP40-205ENST00000430158 OR2T34Q8NGX1 318 aa12.53□□□□□ -0.4
USP40-205ENST00000430158 PIH1D2Q8WWB5 315 aa12.53□□□□□ -0.4
USP40-205ENST00000430158 OXNAD1Q96HP4 312 aaPredicted RBP12.53□□□□□ -0.4
USP40-205ENST00000430158 FCRL5Q96RD9 977 aa12.53□□□□□ -0.4
USP40-205ENST00000430158 TRIB3Q96RU7 358 aa12.53□□□□□ -0.4
USP40-205ENST00000430158 OMDQ99983 421 aa12.53□□□□□ -0.4
USP40-205ENST00000430158 TMEM121Q9BTD3 319 aa12.53□□□□□ -0.4
USP40-205ENST00000430158 GPR174Q9BXC1 333 aa12.53□□□□□ -0.4
USP40-205ENST00000430158 BTBD1Q9H0C5 482 aa12.53□□□□□ -0.4
USP40-205ENST00000430158 KDM4CQ9H3R0 1056 aa12.53□□□□□ -0.4
USP40-205ENST00000430158 ATP13A3Q9H7F0 1226 aa12.53□□□□□ -0.4
USP40-205ENST00000430158 EBF2Q9HAK2 575 aa12.53□□□□□ -0.4
USP40-205ENST00000430158 SEPT10Q9P0V9 454 aa12.53□□□□□ -0.4
USP40-205ENST00000430158 TRHDEQ9UKU6 1024 aa12.53□□□□□ -0.4
USP40-205ENST00000430158 DRG1Q9Y295 367 aaKnown RBP12.53□□□□□ -0.4
USP40-205ENST00000430158 NCKAP1Q9Y2A7 1128 aa12.53□□□□□ -0.4
USP40-205ENST00000430158 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa12.52□□□□□ -0.41
USP40-205ENST00000430158 KCNN4O15554 427 aa12.52□□□□□ -0.41
USP40-205ENST00000430158 LATO43561 262 aa12.52□□□□□ -0.41
USP40-205ENST00000430158 GCATO75600 419 aa12.52□□□□□ -0.41
USP40-205ENST00000430158 PGLSO95336 258 aa12.52□□□□□ -0.41
USP40-205ENST00000430158 TCP1P17987 556 aaKnown RBP12.52□□□□□ -0.41
USP40-205ENST00000430158 NFKB1P19838 968 aa12.52□□□□□ -0.41
USP40-205ENST00000430158 SERPINA4P29622 427 aa12.52□□□□□ -0.41
USP40-205ENST00000430158 CD86P42081 329 aa12.52□□□□□ -0.41
USP40-205ENST00000430158 PTGER3P43115 390 aa12.52□□□□□ -0.41
USP40-205ENST00000430158 CCR5P51681 352 aa12.52□□□□□ -0.41
USP40-205ENST00000430158 NEK3P51956 506 aa12.52□□□□□ -0.41
USP40-205ENST00000430158 BCL2L1Q07817 233 aa12.52□□□□□ -0.41
USP40-205ENST00000430158 SFSWAPQ12872 951 aaKnown RBP12.52□□□□□ -0.41
USP40-205ENST00000430158 UGP2Q16851 508 aa12.52□□□□□ -0.41
USP40-205ENST00000430158 LONRF2Q1L5Z9 754 aa12.52□□□□□ -0.41
USP40-205ENST00000430158 ANKRD20A2Q5SQ80 823 aa12.52□□□□□ -0.41
USP40-205ENST00000430158 ANKRD20A1Q5TYW2 823 aa12.52□□□□□ -0.41
USP40-205ENST00000430158 ANKRD20A3Q5VUR7 823 aa12.52□□□□□ -0.41
USP40-205ENST00000430158 BRAT1Q6PJG6 821 aa12.52□□□□□ -0.41
USP40-205ENST00000430158 ADGRD1Q6QNK2 874 aa12.52□□□□□ -0.41
USP40-205ENST00000430158 TMEFF1Q8IYR6 380 aa12.52□□□□□ -0.41
USP40-205ENST00000430158 CBARPQ8N350 705 aaPredicted RBP12.52□□□□□ -0.41
USP40-205ENST00000430158 FAM71DQ8N9W8 422 aa12.52□□□□□ -0.41
USP40-205ENST00000430158 GLIS1Q8NBF1 620 aa12.52□□□□□ -0.41
USP40-205ENST00000430158 SPATA22Q8NHS9 363 aa12.52□□□□□ -0.41
USP40-205ENST00000430158 DNASE2BQ8WZ79 361 aa12.52□□□□□ -0.41
USP40-205ENST00000430158 RAB7BQ96AH8 199 aa12.52□□□□□ -0.41
USP40-205ENST00000430158 PPP1R16AQ96I34 528 aa12.52□□□□□ -0.41
USP40-205ENST00000430158 SPACA7Q96KW9 195 aa12.52□□□□□ -0.41
USP40-205ENST00000430158 SPATA13Q96N96 652 aa12.52□□□□□ -0.41
USP40-205ENST00000430158 TDRD1Q9BXT4 1180 aaKnown RBP12.52□□□□□ -0.41
USP40-205ENST00000430158 SEMA4AQ9H3S1 761 aa12.52□□□□□ -0.41
USP40-205ENST00000430158 GGT7Q9UJ14 662 aa12.52□□□□□ -0.41
USP40-205ENST00000430158 ZFR2Q9UPR6 939 aaKnown RBP12.52□□□□□ -0.41
USP40-205ENST00000430158 RAI2Q9Y5P3 530 aa12.52□□□□□ -0.41
USP40-205ENST00000430158 SLCO1B1Q9Y6L6 691 aa12.52□□□□□ -0.41
USP40-205ENST00000430158 PLXNA2O75051 1894 aa12.52□□□□□ -0.41
USP40-205ENST00000430158 LAMA1P25391 3075 aa12.51□□□□□ -0.41
USP40-205ENST00000430158 CTAGE9A4FU28 777 aa12.51□□□□□ -0.41
USP40-205ENST00000430158 CFAP69A5D8W1 941 aa12.51□□□□□ -0.41
USP40-205ENST00000430158 UPK3BL1B0FP48 263 aa12.51□□□□□ -0.41
USP40-205ENST00000430158 UPK3BL2E5RIL1 263 aa12.51□□□□□ -0.41
USP40-205ENST00000430158 PDE2AO00408 941 aaPredicted RBP12.51□□□□□ -0.41
USP40-205ENST00000430158 MT-CYBP00156 380 aaPredicted RBP12.51□□□□□ -0.41
USP40-205ENST00000430158 ITGAVP06756 1048 aa12.51□□□□□ -0.41
USP40-205ENST00000430158 SERPINF2P08697 491 aa12.51□□□□□ -0.41
USP40-205ENST00000430158 SUOXP51687 545 aa12.51□□□□□ -0.41
USP40-205ENST00000430158 PPP2CBP62714 309 aa12.51□□□□□ -0.41
USP40-205ENST00000430158 PPP2CAP67775 309 aa12.51□□□□□ -0.41
USP40-205ENST00000430158 RPL6Q02878 288 aaKnown RBP12.51□□□□□ -0.41
USP40-205ENST00000430158 RALGDSQ12967 914 aa12.51□□□□□ -0.41
USP40-205ENST00000430158 FGL2Q14314 439 aa12.51□□□□□ -0.41
USP40-205ENST00000430158 TMEM52BQ4KMG9 183 aa12.51□□□□□ -0.41
USP40-205ENST00000430158 TMEM259Q4ZIN3 620 aa12.51□□□□□ -0.41
USP40-205ENST00000430158 PEAR1Q5VY43 1037 aaPredicted RBP12.51□□□□□ -0.41
USP40-205ENST00000430158 KIAA0895LQ68EN5 471 aa12.51□□□□□ -0.41
USP40-205ENST00000430158 NEK5Q6P3R8 708 aa12.51□□□□□ -0.41
USP40-205ENST00000430158 TTC27Q6P3X3 843 aa12.51□□□□□ -0.41
USP40-205ENST00000430158 CEP68Q76N32 757 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms