RNA–Protein interactions for RNA: ENST00000427724.6

TCOF1-204, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5

Gene TCOF1, Length 4,272 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-204ENST00000427724 P2RY13Q9BPV8 354 aa10.73□□□□□ -0.69
TCOF1-204ENST00000427724 BTBD10Q9BSF8 475 aa10.73□□□□□ -0.69
TCOF1-204ENST00000427724 FBXO6Q9NRD1 293 aaPredicted RBP10.73□□□□□ -0.69
TCOF1-204ENST00000427724 PHPT1Q9NRX4 125 aaPredicted RBP10.73□□□□□ -0.69
TCOF1-204ENST00000427724 GRID1Q9ULK0 1009 aa10.73□□□□□ -0.69
TCOF1-204ENST00000427724 TAF1P21675 1872 aa10.73□□□□□ -0.69
TCOF1-204ENST00000427724 RBM47A0AV96 593 aaKnown RBP10.73□□□□□ -0.69
TCOF1-204ENST00000427724 EDF1O60869 148 aaKnown RBP10.73□□□□□ -0.69
TCOF1-204ENST00000427724 PGM3O95394 542 aa10.73□□□□□ -0.69
TCOF1-204ENST00000427724 KDELR1P24390 212 aa10.73□□□□□ -0.69
TCOF1-204ENST00000427724 PBX2P40425 430 aa10.73□□□□□ -0.69
TCOF1-204ENST00000427724 DLG2Q15700 870 aa10.73□□□□□ -0.69
TCOF1-204ENST00000427724 KCTD21Q4G0X4 260 aa10.73□□□□□ -0.69
TCOF1-204ENST00000427724 EOGTQ5NDL2 527 aa10.73□□□□□ -0.69
TCOF1-204ENST00000427724 CES3Q6UWW8 571 aa10.73□□□□□ -0.69
TCOF1-204ENST00000427724 TAC4Q86UU9 113 aa10.73□□□□□ -0.69
TCOF1-204ENST00000427724 SCUBE1Q8IWY4 988 aa10.73□□□□□ -0.69
TCOF1-204ENST00000427724 GALNT15Q8N3T1 639 aa10.73□□□□□ -0.69
TCOF1-204ENST00000427724 SLC4A11Q8NBS3 891 aa10.73□□□□□ -0.69
TCOF1-204ENST00000427724 JOSD2Q8TAC2 188 aa10.73□□□□□ -0.69
TCOF1-204ENST00000427724 SMARCD2Q92925 531 aa10.73□□□□□ -0.69
TCOF1-204ENST00000427724 GLMNQ92990 594 aa10.73□□□□□ -0.69
TCOF1-204ENST00000427724 THAP11Q96EK4 314 aa10.73□□□□□ -0.69
TCOF1-204ENST00000427724 CNBD2Q96M20 576 aa10.73□□□□□ -0.69
TCOF1-204ENST00000427724 BRD8Q9H0E9 1235 aa10.73□□□□□ -0.69
TCOF1-204ENST00000427724 CNTN3Q9P232 1028 aa10.73□□□□□ -0.69
TCOF1-204ENST00000427724 APPL1Q9UKG1 709 aa10.73□□□□□ -0.69
TCOF1-204ENST00000427724 SLC12A4Q9UP95 1085 aa10.73□□□□□ -0.69
TCOF1-204ENST00000427724 HBS1LQ9Y450 684 aaKnown RBP10.73□□□□□ -0.69
TCOF1-204ENST00000427724 hCG_1818297A0A087WSY0 165 aa10.72□□□□□ -0.69
TCOF1-204ENST00000427724 PSMG1O95456 288 aa10.72□□□□□ -0.69
TCOF1-204ENST00000427724 SERPINB9P50453 376 aa10.72□□□□□ -0.69
TCOF1-204ENST00000427724 TAF5Q15542 800 aa10.72□□□□□ -0.69
TCOF1-204ENST00000427724 BORCS6Q96GS4 357 aa10.72□□□□□ -0.69
TCOF1-204ENST00000427724 SLC17A7Q9P2U7 560 aa10.72□□□□□ -0.69
TCOF1-204ENST00000427724 ZNF212Q9UDV6 495 aa10.72□□□□□ -0.69
TCOF1-204ENST00000427724 COL2A1P02458 1487 aaPredicted RBP10.72□□□□□ -0.69
TCOF1-204ENST00000427724 FAM237BA0A1B0GVD1 139 aa10.72□□□□□ -0.69
TCOF1-204ENST00000427724 LINC01553A4QN01 128 aa10.72□□□□□ -0.69
TCOF1-204ENST00000427724 MAN2B1O00754 1011 aa10.72□□□□□ -0.69
TCOF1-204ENST00000427724 MAGEC1O60732 1142 aa10.72□□□□□ -0.69
TCOF1-204ENST00000427724 DAB1O75553 588 aa10.72□□□□□ -0.69
TCOF1-204ENST00000427724 DGKIO75912 1065 aa10.72□□□□□ -0.69
TCOF1-204ENST00000427724 CLPTM1O96005 669 aa10.72□□□□□ -0.69
TCOF1-204ENST00000427724 APOA4P06727 396 aa10.72□□□□□ -0.69
TCOF1-204ENST00000427724 ZNF7P17097 686 aaPredicted RBP10.72□□□□□ -0.69
TCOF1-204ENST00000427724 PTPN3P26045 913 aa10.72□□□□□ -0.69
TCOF1-204ENST00000427724 FOXN2P32314 431 aa10.72□□□□□ -0.69
TCOF1-204ENST00000427724 SPRP35270 261 aaPredicted RBP10.72□□□□□ -0.69
TCOF1-204ENST00000427724 DPYSL3Q14195 570 aa10.72□□□□□ -0.69
TCOF1-204ENST00000427724 CYP1B1Q16678 543 aa10.72□□□□□ -0.69
TCOF1-204ENST00000427724 TMEM259Q4ZIN3 620 aa10.72□□□□□ -0.69
TCOF1-204ENST00000427724 LRRC73Q5JTD7 316 aa10.72□□□□□ -0.69
TCOF1-204ENST00000427724 UBAP2Q5T6F2 1119 aaKnown RBP10.72□□□□□ -0.69
TCOF1-204ENST00000427724 MBLAC2Q68D91 279 aa10.72□□□□□ -0.69
TCOF1-204ENST00000427724 UGT3A1Q6NUS8 523 aa10.72□□□□□ -0.69
TCOF1-204ENST00000427724 METTL3Q86U44 580 aaKnown RBP10.72□□□□□ -0.69
TCOF1-204ENST00000427724 PHF13Q86YI8 300 aaPredicted RBP10.72□□□□□ -0.69
TCOF1-204ENST00000427724 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP10.72□□□□□ -0.692e-7■■■■■ 102.3
TCOF1-204ENST00000427724 POU5F2Q8N7G0 328 aa10.72□□□□□ -0.69
TCOF1-204ENST00000427724 TMEM209Q96SK2 561 aa10.72□□□□□ -0.69
TCOF1-204ENST00000427724 TPSD1Q9BZJ3 242 aa10.72□□□□□ -0.69
TCOF1-204ENST00000427724 PRKD2Q9BZL6 878 aa10.72□□□□□ -0.69
TCOF1-204ENST00000427724 ADA2Q9NZK5 511 aa10.72□□□□□ -0.69
TCOF1-204ENST00000427724 SPASTQ9UBP0 616 aa10.72□□□□□ -0.69
TCOF1-204ENST00000427724 COL18A1P39060 1754 aa10.72□□□□□ -0.69
TCOF1-204ENST00000427724 TRIM43BA6NCK2 446 aa10.72□□□□□ -0.69
TCOF1-204ENST00000427724 PSMD12O00232 456 aaPredicted RBP10.72□□□□□ -0.69
TCOF1-204ENST00000427724 ABHD2P08910 425 aa10.72□□□□□ -0.69
TCOF1-204ENST00000427724 TYRP14679 529 aa10.72□□□□□ -0.69
TCOF1-204ENST00000427724 DAOAP59103 153 aa10.72□□□□□ -0.69
TCOF1-204ENST00000427724 SEMG2Q02383 582 aa10.72□□□□□ -0.69
TCOF1-204ENST00000427724 SLC25A52Q3SY17 297 aa10.72□□□□□ -0.69
TCOF1-204ENST00000427724 CLLU1OSQ5K130 101 aa10.72□□□□□ -0.69
TCOF1-204ENST00000427724 MYO1HQ8N1T3 1032 aa10.72□□□□□ -0.69
TCOF1-204ENST00000427724 TRIM43Q96BQ3 446 aaPredicted RBP10.72□□□□□ -0.69
TCOF1-204ENST00000427724 OXNAD1Q96HP4 312 aaPredicted RBP10.72□□□□□ -0.69
TCOF1-204ENST00000427724 APOPT1Q96IL0 206 aa10.72□□□□□ -0.69
TCOF1-204ENST00000427724 TRAPPC9Q96Q05 1148 aa10.72□□□□□ -0.69
TCOF1-204ENST00000427724 BTBD1Q9H0C5 482 aa10.72□□□□□ -0.69
TCOF1-204ENST00000427724 CACNA2D2Q9NY47 1150 aa10.72□□□□□ -0.69
TCOF1-204ENST00000427724 CHKBQ9Y259 395 aa10.72□□□□□ -0.69
TCOF1-204ENST00000427724 SNX10Q9Y5X0 201 aa10.72□□□□□ -0.69
TCOF1-204ENST00000427724 AVILO75366 819 aa10.72□□□□□ -0.69
TCOF1-204ENST00000427724 ITGB1P05556 798 aa10.72□□□□□ -0.69
TCOF1-204ENST00000427724 HAPLN1P10915 354 aaPredicted RBP10.72□□□□□ -0.69
TCOF1-204ENST00000427724 HLA-EP13747 358 aa10.72□□□□□ -0.69
TCOF1-204ENST00000427724 ENO3P13929 434 aaPredicted RBP10.72□□□□□ -0.69
TCOF1-204ENST00000427724 CCNB1P14635 433 aa10.72□□□□□ -0.69
TCOF1-204ENST00000427724 TNNI3P19429 210 aa10.72□□□□□ -0.69
TCOF1-204ENST00000427724 PCYT1AP49585 367 aa10.72□□□□□ -0.69
TCOF1-204ENST00000427724 SOX4Q06945 474 aaPredicted RBP10.72□□□□□ -0.69
TCOF1-204ENST00000427724 ILF3Q12906 894 aaKnown RBP eCLIP10.72□□□□□ -0.69
TCOF1-204ENST00000427724 INPP5DQ92835 1189 aa10.72□□□□□ -0.69
TCOF1-204ENST00000427724 FAM192AQ9GZU8 254 aa10.72□□□□□ -0.69
TCOF1-204ENST00000427724 FAM96AQ9H5X1 160 aa10.72□□□□□ -0.69
TCOF1-204ENST00000427724 WDR41Q9HAD4 459 aa10.72□□□□□ -0.69
TCOF1-204ENST00000427724 FBXL12Q9NXK8 326 aa10.72□□□□□ -0.69
TCOF1-204ENST00000427724 USP54Q70EL1 1684 aa10.72□□□□□ -0.69
TCOF1-204ENST00000427724 FAM170BA6NMN3 283 aa10.71□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms