RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 WDR27A2RRH5 827 aa6.9□□□□□ -1.3
SCN1A-204ENST00000423058 H0YJX3 145 aa6.9□□□□□ -1.3
SCN1A-204ENST00000423058 PGRMC2O15173 223 aa6.9□□□□□ -1.3
SCN1A-204ENST00000423058 KERAO60938 352 aa6.9□□□□□ -1.3
SCN1A-204ENST00000423058 MAP3K6O95382 1288 aa6.9□□□□□ -1.3
SCN1A-204ENST00000423058 TOP3BO95985 862 aaKnown RBP6.9□□□□□ -1.3
SCN1A-204ENST00000423058 ALAS2P22557 587 aa6.9□□□□□ -1.3
SCN1A-204ENST00000423058 AVPR1BP47901 424 aa6.9□□□□□ -1.3
SCN1A-204ENST00000423058 MECP2P51608 486 aaKnown RBP6.9□□□□□ -1.3
SCN1A-204ENST00000423058 FAM153CQ494X1 144 aa6.9□□□□□ -1.3
SCN1A-204ENST00000423058 ACTRT1Q8TDG2 376 aa6.9□□□□□ -1.3
SCN1A-204ENST00000423058 COX4I2Q96KJ9 171 aa6.9□□□□□ -1.3
SCN1A-204ENST00000423058 SLC25A23Q9BV35 468 aa6.9□□□□□ -1.3
SCN1A-204ENST00000423058 CST11Q9H112 138 aa6.9□□□□□ -1.3
SCN1A-204ENST00000423058 MOCS1Q9NZB8 636 aa6.9□□□□□ -1.3
SCN1A-204ENST00000423058 MAT2BQ9NZL9 334 aa6.9□□□□□ -1.3
SCN1A-204ENST00000423058 A0A0J9YVX5 310 aa6.9□□□□□ -1.31
SCN1A-204ENST00000423058 ATG13O75143 517 aa6.9□□□□□ -1.31
SCN1A-204ENST00000423058 SMNDC1O75940 238 aaKnown RBP eCLIP6.9□□□□□ -1.31
SCN1A-204ENST00000423058 RGS20O76081 388 aa6.9□□□□□ -1.31
SCN1A-204ENST00000423058 PROSCO94903 275 aa6.9□□□□□ -1.31
SCN1A-204ENST00000423058 LRPAP1P30533 357 aa6.9□□□□□ -1.31
SCN1A-204ENST00000423058 ARL3P36405 182 aa6.9□□□□□ -1.31
SCN1A-204ENST00000423058 MNDAP41218 407 aa6.9□□□□□ -1.31
SCN1A-204ENST00000423058 STXBP1P61764 594 aaKnown RBP6.9□□□□□ -1.31
SCN1A-204ENST00000423058 AKIRIN2Q53H80 203 aa6.9□□□□□ -1.31
SCN1A-204ENST00000423058 HSDL2Q6YN16 418 aa6.9□□□□□ -1.31
SCN1A-204ENST00000423058 BEND5Q7L4P6 421 aa6.9□□□□□ -1.31
SCN1A-204ENST00000423058 P4HA3Q7Z4N8 544 aa6.9□□□□□ -1.31
SCN1A-204ENST00000423058 STK32CQ86UX6 486 aa6.9□□□□□ -1.31
SCN1A-204ENST00000423058 RBFAQ8N0V3 343 aa6.9□□□□□ -1.31
SCN1A-204ENST00000423058 C12orf50Q8NA57 414 aaPredicted RBP6.9□□□□□ -1.31
SCN1A-204ENST00000423058 PIK3C3Q8NEB9 887 aa6.9□□□□□ -1.31
SCN1A-204ENST00000423058 ACOT12Q8WYK0 555 aa6.9□□□□□ -1.31
SCN1A-204ENST00000423058 OMA1Q96E52 524 aa6.9□□□□□ -1.31
SCN1A-204ENST00000423058 RXFP1Q9HBX9 757 aa6.9□□□□□ -1.31
SCN1A-204ENST00000423058 CCDC167Q9P0B6 97 aa6.9□□□□□ -1.31
SCN1A-204ENST00000423058 SNX7Q9UNH6 387 aa6.9□□□□□ -1.31
SCN1A-204ENST00000423058 MYRFQ9Y2G1 1151 aa6.9□□□□□ -1.31
SCN1A-204ENST00000423058 ACKR2O00590 384 aa6.9□□□□□ -1.31
SCN1A-204ENST00000423058 CHST10O43529 356 aa6.9□□□□□ -1.31
SCN1A-204ENST00000423058 FGBP02675 491 aa6.9□□□□□ -1.31
SCN1A-204ENST00000423058 PRKAR1AP10644 381 aa6.9□□□□□ -1.31
SCN1A-204ENST00000423058 CCT3P49368 545 aaKnown RBP6.9□□□□□ -1.31
SCN1A-204ENST00000423058 TUBB3Q13509 450 aa6.9□□□□□ -1.31
SCN1A-204ENST00000423058 MAPK14Q16539 360 aa6.9□□□□□ -1.31
SCN1A-204ENST00000423058 KLHL26Q53HC5 615 aa6.9□□□□□ -1.31
SCN1A-204ENST00000423058 FAM91A1Q658Y4 838 aa6.9□□□□□ -1.31
SCN1A-204ENST00000423058 SCUBE3Q8IX30 993 aa6.9□□□□□ -1.31
SCN1A-204ENST00000423058 MARCH10Q8NA82 808 aaPredicted RBP6.9□□□□□ -1.31
SCN1A-204ENST00000423058 ADCY4Q8NFM4 1077 aa6.9□□□□□ -1.31
SCN1A-204ENST00000423058 SLC2A14Q8TDB8 520 aa6.9□□□□□ -1.31
SCN1A-204ENST00000423058 FATE1Q969F0 183 aa6.9□□□□□ -1.31
SCN1A-204ENST00000423058 AP2M1Q96CW1 435 aa6.9□□□□□ -1.31
SCN1A-204ENST00000423058 SENP8Q96LD8 212 aa6.9□□□□□ -1.31
SCN1A-204ENST00000423058 GPN1Q9HCN4 374 aaPredicted RBP6.9□□□□□ -1.31
SCN1A-204ENST00000423058 CHMP1AQ9HD42 196 aaPredicted RBP6.9□□□□□ -1.31
SCN1A-204ENST00000423058 IKZF3Q9UKT9 509 aa6.9□□□□□ -1.31
SCN1A-204ENST00000423058 ING4Q9UNL4 249 aa6.9□□□□□ -1.31
SCN1A-204ENST00000423058 LRRC7Q96NW7 1537 aa6.9□□□□□ -1.31
SCN1A-204ENST00000423058 FAM25EA8MYX2 175 aa6.9□□□□□ -1.31
SCN1A-204ENST00000423058 ZNF879B4DU55 563 aa6.9□□□□□ -1.31
SCN1A-204ENST00000423058 H0Y858 1186 aa6.9□□□□□ -1.31
SCN1A-204ENST00000423058 OTCP00480 354 aa6.9□□□□□ -1.31
SCN1A-204ENST00000423058 PIM1P11309 404 aaPredicted RBP6.9□□□□□ -1.31
SCN1A-204ENST00000423058 NQO1P15559 274 aaKnown RBP6.9□□□□□ -1.31
SCN1A-204ENST00000423058 ATP5A1P25705 553 aaKnown RBP6.9□□□□□ -1.31
SCN1A-204ENST00000423058 RPS6KA3P51812 740 aa6.9□□□□□ -1.31
SCN1A-204ENST00000423058 MKRN4PQ13434 485 aaPredicted RBP6.9□□□□□ -1.31
SCN1A-204ENST00000423058 MAPKAPK3Q16644 382 aa6.9□□□□□ -1.31
SCN1A-204ENST00000423058 PFKFB4Q16877 469 aa6.9□□□□□ -1.31
SCN1A-204ENST00000423058 RNF43Q68DV7 783 aa6.9□□□□□ -1.31
SCN1A-204ENST00000423058 MSANTD1Q6ZTZ1 278 aa6.9□□□□□ -1.31
SCN1A-204ENST00000423058 CHST15Q7LFX5 561 aaPredicted RBP6.9□□□□□ -1.31
SCN1A-204ENST00000423058 ZNF720Q7Z2F6 126 aa6.9□□□□□ -1.31
SCN1A-204ENST00000423058 GPALPP1Q8IXQ4 340 aa6.9□□□□□ -1.31
SCN1A-204ENST00000423058 C8orf59Q8N0T1 100 aaPredicted RBP6.9□□□□□ -1.31
SCN1A-204ENST00000423058 ABRAQ8N0Z2 381 aa6.9□□□□□ -1.31
SCN1A-204ENST00000423058 OR4A15Q8NGL6 344 aa6.9□□□□□ -1.31
SCN1A-204ENST00000423058 RAD51AP1Q96B01 352 aa6.9□□□□□ -1.31
SCN1A-204ENST00000423058 C5orf34Q96MH7 638 aa6.9□□□□□ -1.31
SCN1A-204ENST00000423058 MNTQ99583 582 aa6.9□□□□□ -1.31
SCN1A-204ENST00000423058 CHCHD6Q9BRQ6 235 aa6.9□□□□□ -1.31
SCN1A-204ENST00000423058 GPRC5CQ9NQ84 441 aa6.9□□□□□ -1.31
SCN1A-204ENST00000423058 DAPK2Q9UIK4 370 aa6.9□□□□□ -1.31
SCN1A-204ENST00000423058 SSR3Q9UNL2 185 aa6.9□□□□□ -1.31
SCN1A-204ENST00000423058 TIMM13Q9Y5L4 95 aaPredicted RBP6.9□□□□□ -1.31
SCN1A-204ENST00000423058 E9PCH4 1651 aa6.89□□□□□ -1.31
SCN1A-204ENST00000423058 A0A087X0B3 334 aa6.89□□□□□ -1.31
SCN1A-204ENST00000423058 ULK1O75385 1050 aa6.89□□□□□ -1.31
SCN1A-204ENST00000423058 PRKAR2AP13861 404 aaKnown RBP6.89□□□□□ -1.31
SCN1A-204ENST00000423058 FDPSP14324 419 aaKnown RBP6.89□□□□□ -1.31
SCN1A-204ENST00000423058 HSD3B2P26439 372 aa6.89□□□□□ -1.31
SCN1A-204ENST00000423058 MGAT1P26572 445 aa6.89□□□□□ -1.31
SCN1A-204ENST00000423058 EIF2S3P41091 472 aaKnown RBP6.89□□□□□ -1.31
SCN1A-204ENST00000423058 FKBP1BP68106 108 aa6.89□□□□□ -1.31
SCN1A-204ENST00000423058 SCRN3Q0VDG4 424 aa6.89□□□□□ -1.31
SCN1A-204ENST00000423058 RAPSNQ13702 412 aa6.89□□□□□ -1.31
SCN1A-204ENST00000423058 PTPRNQ16849 979 aa6.89□□□□□ -1.31
SCN1A-204ENST00000423058 SWI5Q1ZZU3 235 aa6.89□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms