RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 CSH1P0DML2 217 aa12.96□□□□□ -0.33
COL6A3-206ENST00000409809 CSH2P0DML3 217 aa12.96□□□□□ -0.33
COL6A3-206ENST00000409809 CYP3A7P24462 503 aa12.96□□□□□ -0.33
COL6A3-206ENST00000409809 SOX11P35716 441 aa12.96□□□□□ -0.33
COL6A3-206ENST00000409809 CLCN5P51795 746 aa12.96□□□□□ -0.33
COL6A3-206ENST00000409809 PKNOX1P55347 436 aa12.96□□□□□ -0.33
COL6A3-206ENST00000409809 DEFA5Q01523 94 aa12.96□□□□□ -0.33
COL6A3-206ENST00000409809 CSHL1Q14406 222 aa12.96□□□□□ -0.33
COL6A3-206ENST00000409809 LYPLAL1Q5VWZ2 237 aa12.96□□□□□ -0.33
COL6A3-206ENST00000409809 PTCHD4Q6ZW05 846 aa12.96□□□□□ -0.33
COL6A3-206ENST00000409809 DCP1BQ8IZD4 617 aaKnown RBP12.96□□□□□ -0.33
COL6A3-206ENST00000409809 ATG4AQ8WYN0 398 aa12.96□□□□□ -0.33
COL6A3-206ENST00000409809 OPTCQ9UBM4 332 aa12.96□□□□□ -0.33
COL6A3-206ENST00000409809 ENTPD4Q9Y227 616 aa12.96□□□□□ -0.33
COL6A3-206ENST00000409809 GJA3Q9Y6H8 435 aa12.96□□□□□ -0.33
COL6A3-206ENST00000409809 RPTORQ8N122 1335 aa12.96□□□□□ -0.33
COL6A3-206ENST00000409809 OGTO15294 1046 aa12.96□□□□□ -0.33
COL6A3-206ENST00000409809 NDUFS2O75306 463 aa12.96□□□□□ -0.33
COL6A3-206ENST00000409809 CDK18Q07002 472 aa12.96□□□□□ -0.33
COL6A3-206ENST00000409809 PCID2Q5JVF3 399 aa12.96□□□□□ -0.33
COL6A3-206ENST00000409809 NT5DC4Q86YG4 428 aa12.96□□□□□ -0.33
COL6A3-206ENST00000409809 CHERPQ8IWX8 916 aaKnown RBP12.96□□□□□ -0.33
COL6A3-206ENST00000409809 LGALS13Q9UHV8 139 aa12.96□□□□□ -0.33
COL6A3-206ENST00000409809 MYO5BQ9ULV0 1848 aa12.96□□□□□ -0.33
COL6A3-206ENST00000409809 EPCAMP16422 314 aa12.96□□□□□ -0.33
COL6A3-206ENST00000409809 PTPN1P18031 435 aaKnown RBP12.96□□□□□ -0.33
COL6A3-206ENST00000409809 TSEN2Q8NCE0 465 aaKnown RBP12.96□□□□□ -0.33
COL6A3-206ENST00000409809 GTF3C2Q8WUA4 911 aaPredicted RBP12.96□□□□□ -0.33
COL6A3-206ENST00000409809 IL1RAPQ9NPH3 570 aa12.96□□□□□ -0.33
COL6A3-206ENST00000409809 FAM25EA8MYX2 175 aa12.96□□□□□ -0.33
COL6A3-206ENST00000409809 KMOO15229 486 aa12.96□□□□□ -0.33
COL6A3-206ENST00000409809 PIGNO95427 931 aa12.96□□□□□ -0.33
COL6A3-206ENST00000409809 PAX3P23760 479 aa12.96□□□□□ -0.33
COL6A3-206ENST00000409809 UBXN2AP68543 259 aa12.96□□□□□ -0.33
COL6A3-206ENST00000409809 USP4Q13107 963 aa12.96□□□□□ -0.33
COL6A3-206ENST00000409809 PTPAQ15257 358 aa12.96□□□□□ -0.33
COL6A3-206ENST00000409809 GOLGA7BQ2TAP0 167 aa12.96□□□□□ -0.33
COL6A3-206ENST00000409809 FNBP1LQ5T0N5 605 aa12.96□□□□□ -0.33
COL6A3-206ENST00000409809 ARMC6Q6NXE6 501 aa12.96□□□□□ -0.33
COL6A3-206ENST00000409809 SATL1Q86VE3 508 aa12.96□□□□□ -0.33
COL6A3-206ENST00000409809 AP4E1Q9UPM8 1137 aa12.96□□□□□ -0.33
COL6A3-206ENST00000409809 HTR2AP28223 471 aa12.96□□□□□ -0.34
COL6A3-206ENST00000409809 NTSP30990 170 aa12.96□□□□□ -0.34
COL6A3-206ENST00000409809 KLK7P49862 253 aa12.96□□□□□ -0.34
COL6A3-206ENST00000409809 ADAM8P78325 824 aa12.96□□□□□ -0.34
COL6A3-206ENST00000409809 KLHL22Q53GT1 634 aa12.96□□□□□ -0.34
COL6A3-206ENST00000409809 IL31Q6EBC2 164 aa12.96□□□□□ -0.34
COL6A3-206ENST00000409809 KLHDC10Q6PID8 442 aa12.96□□□□□ -0.34
COL6A3-206ENST00000409809 FNDC8Q8TC99 324 aa12.96□□□□□ -0.34
COL6A3-206ENST00000409809 ACTR6Q9GZN1 396 aa12.96□□□□□ -0.34
COL6A3-206ENST00000409809 NXF3Q9H4D5 531 aaKnown RBP12.96□□□□□ -0.34
COL6A3-206ENST00000409809 ARHGAP20Q9P2F6 1191 aa12.96□□□□□ -0.34
COL6A3-206ENST00000409809 OR2AT4A6NND4 320 aa12.96□□□□□ -0.34
COL6A3-206ENST00000409809 AVILO75366 819 aa12.96□□□□□ -0.34
COL6A3-206ENST00000409809 RLN2P04090 185 aa12.96□□□□□ -0.34
COL6A3-206ENST00000409809 ERBB2P04626 1255 aa12.96□□□□□ -0.34
COL6A3-206ENST00000409809 HIST1H2ABP04908 130 aa12.96□□□□□ -0.34
COL6A3-206ENST00000409809 CCNB1P14635 433 aa12.96□□□□□ -0.34
COL6A3-206ENST00000409809 IGFBP5P24593 272 aa12.96□□□□□ -0.34
COL6A3-206ENST00000409809 CYP2C18P33260 490 aa12.96□□□□□ -0.34
COL6A3-206ENST00000409809 LSM12Q3MHD2 195 aaKnown RBP12.96□□□□□ -0.34
COL6A3-206ENST00000409809 HIST3H2AQ7L7L0 130 aa12.96□□□□□ -0.34
COL6A3-206ENST00000409809 TRABD2AQ86V40 505 aa12.96□□□□□ -0.34
COL6A3-206ENST00000409809 POF1BQ8WVV4 589 aa12.96□□□□□ -0.34
COL6A3-206ENST00000409809 HIST1H2ACQ93077 130 aa12.96□□□□□ -0.34
COL6A3-206ENST00000409809 RDH8Q9NYR8 311 aa12.96□□□□□ -0.34
COL6A3-206ENST00000409809 PMPCBO75439 489 aa12.95□□□□□ -0.34
COL6A3-206ENST00000409809 TDP2O95551 362 aa12.95□□□□□ -0.34
COL6A3-206ENST00000409809 SCNN1DP51172 638 aa12.95□□□□□ -0.34
COL6A3-206ENST00000409809 IL2P60568 153 aa12.95□□□□□ -0.34
COL6A3-206ENST00000409809 ATP6V0D1P61421 351 aa12.95□□□□□ -0.34
COL6A3-206ENST00000409809 RALGDSQ12967 914 aa12.95□□□□□ -0.34
COL6A3-206ENST00000409809 PIK3R6Q5UE93 754 aa12.95□□□□□ -0.34
COL6A3-206ENST00000409809 UNC5BQ8IZJ1 945 aa12.95□□□□□ -0.34
COL6A3-206ENST00000409809 NKX2-3Q8TAU0 364 aa12.95□□□□□ -0.34
COL6A3-206ENST00000409809 BAP1Q92560 729 aa12.95□□□□□ -0.34
COL6A3-206ENST00000409809 KAT5Q92993 513 aa12.95□□□□□ -0.34
COL6A3-206ENST00000409809 NSMCE3Q96MG7 304 aa12.95□□□□□ -0.34
COL6A3-206ENST00000409809 AIF1LQ9BQI0 150 aa12.95□□□□□ -0.34
COL6A3-206ENST00000409809 SH3D21A4FU49 640 aa12.95□□□□□ -0.34
COL6A3-206ENST00000409809 PITPNM1O00562 1244 aa12.95□□□□□ -0.34
COL6A3-206ENST00000409809 TPP1O14773 563 aa12.95□□□□□ -0.34
COL6A3-206ENST00000409809 GLDCP23378 1020 aa12.95□□□□□ -0.34
COL6A3-206ENST00000409809 MILR1Q7Z6M3 343 aa12.95□□□□□ -0.34
COL6A3-206ENST00000409809 FSTL5Q8N475 847 aaPredicted RBP12.95□□□□□ -0.34
COL6A3-206ENST00000409809 MTMR8Q96EF0 704 aa12.95□□□□□ -0.34
COL6A3-206ENST00000409809 BCL7BQ9BQE9 202 aa12.95□□□□□ -0.34
COL6A3-206ENST00000409809 POMKQ9H5K3 350 aa12.95□□□□□ -0.34
COL6A3-206ENST00000409809 TRPC4Q9UBN4 977 aa12.95□□□□□ -0.34
COL6A3-206ENST00000409809 TRPS1Q9UHF7 1281 aa12.95□□□□□ -0.34
COL6A3-206ENST00000409809 EFCAB9A8MZ26 197 aa12.95□□□□□ -0.34
COL6A3-206ENST00000409809 SULT1B1O43704 296 aa12.95□□□□□ -0.34
COL6A3-206ENST00000409809 ACSL1P33121 698 aa12.95□□□□□ -0.34
COL6A3-206ENST00000409809 CRHR1P34998 444 aa12.95□□□□□ -0.34
COL6A3-206ENST00000409809 ZNF571Q7Z3V5 609 aaPredicted RBP12.95□□□□□ -0.34
COL6A3-206ENST00000409809 ELMOD2Q8IZ81 293 aa12.95□□□□□ -0.34
COL6A3-206ENST00000409809 PHC3Q8NDX5 983 aa12.95□□□□□ -0.34
COL6A3-206ENST00000409809 DNAJB14Q8TBM8 379 aa12.95□□□□□ -0.34
COL6A3-206ENST00000409809 KLHL5Q96PQ7 755 aa12.95□□□□□ -0.34
COL6A3-206ENST00000409809 BCL2L14Q9BZR8 327 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms