RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 PSEN1P49768 467 aa13.49□□□□□ -0.25
VPS54-203ENST00000409558 RAB41Q5JT25 222 aa13.49□□□□□ -0.25
VPS54-203ENST00000409558 DENND5AQ6IQ26 1287 aa13.49□□□□□ -0.25
VPS54-203ENST00000409558 SPATA31D4Q6ZUB0 917 aa13.49□□□□□ -0.25
VPS54-203ENST00000409558 ECSITQ9BQ95 431 aa13.49□□□□□ -0.25
VPS54-203ENST00000409558 VCXQ9H320 206 aa13.49□□□□□ -0.25
VPS54-203ENST00000409558 CRISPLD1Q9H336 500 aa13.49□□□□□ -0.25
VPS54-203ENST00000409558 PLK2Q9NYY3 685 aa13.49□□□□□ -0.25
VPS54-203ENST00000409558 LRCH1Q9Y2L9 728 aa13.49□□□□□ -0.25
VPS54-203ENST00000409558 TIMM22Q9Y584 194 aa13.49□□□□□ -0.25
VPS54-203ENST00000409558 PCDHGC4Q9Y5F7 938 aa13.49□□□□□ -0.25
VPS54-203ENST00000409558 AOC2O75106 756 aa13.49□□□□□ -0.25
VPS54-203ENST00000409558 PAMP19021 973 aa13.49□□□□□ -0.25
VPS54-203ENST00000409558 AOC1P19801 751 aa13.49□□□□□ -0.25
VPS54-203ENST00000409558 SERPINH1P50454 418 aaKnown RBP13.49□□□□□ -0.25
VPS54-203ENST00000409558 CCL23P55773 120 aa13.49□□□□□ -0.25
VPS54-203ENST00000409558 IHHQ14623 411 aa13.49□□□□□ -0.25
VPS54-203ENST00000409558 PAOXQ6QHF9 649 aa13.49□□□□□ -0.25
VPS54-203ENST00000409558 EPGNQ6UW88 154 aa13.49□□□□□ -0.25
VPS54-203ENST00000409558 RTN4RL1Q86UN2 441 aaPredicted RBP13.49□□□□□ -0.25
VPS54-203ENST00000409558 NSUN5Q96P11 429 aaKnown RBP13.49□□□□□ -0.25
VPS54-203ENST00000409558 RGS18Q9NS28 235 aa13.49□□□□□ -0.25
VPS54-203ENST00000409558 ZNF195O14628 629 aa13.48□□□□□ -0.25
VPS54-203ENST00000409558 MAGEC1O60732 1142 aa13.48□□□□□ -0.25
VPS54-203ENST00000409558 RAMP2O60895 175 aa13.48□□□□□ -0.25
VPS54-203ENST00000409558 MT-ND1P03886 318 aa13.48□□□□□ -0.25
VPS54-203ENST00000409558 BMP1P13497 986 aa13.48□□□□□ -0.25
VPS54-203ENST00000409558 RPL34P49207 117 aaKnown RBP13.48□□□□□ -0.25
VPS54-203ENST00000409558 GK3PQ14409 553 aa13.48□□□□□ -0.25
VPS54-203ENST00000409558 CYTH1Q15438 398 aa13.48□□□□□ -0.25
VPS54-203ENST00000409558 TMEM173Q86WV6 379 aaPredicted RBP13.48□□□□□ -0.25
VPS54-203ENST00000409558 GPR22Q99680 433 aa13.48□□□□□ -0.25
VPS54-203ENST00000409558 WDR41Q9HAD4 459 aa13.48□□□□□ -0.25
VPS54-203ENST00000409558 SEMA4BQ9NPR2 832 aaPredicted RBP13.48□□□□□ -0.25
VPS54-203ENST00000409558 CDKN1CP49918 316 aaPredicted RBP13.48□□□□□ -0.25
VPS54-203ENST00000409558 MS4A2Q01362 244 aa13.48□□□□□ -0.25
VPS54-203ENST00000409558 FUT11Q495W5 492 aa13.48□□□□□ -0.25
VPS54-203ENST00000409558 AMIGO2Q86SJ2 522 aa13.48□□□□□ -0.25
VPS54-203ENST00000409558 DHDDSQ86SQ9 333 aa13.48□□□□□ -0.25
VPS54-203ENST00000409558 KYQ8NBH2 561 aa13.48□□□□□ -0.25
VPS54-203ENST00000409558 SCLYQ96I15 445 aa13.48□□□□□ -0.25
VPS54-203ENST00000409558 TBC1D13Q9NVG8 400 aa13.48□□□□□ -0.25
VPS54-203ENST00000409558 RNF186Q9NXI6 227 aa13.48□□□□□ -0.25
VPS54-203ENST00000409558 RAP2CQ9Y3L5 183 aa13.48□□□□□ -0.25
VPS54-203ENST00000409558 GRID2O43424 1007 aa13.48□□□□□ -0.25
VPS54-203ENST00000409558 RNASEH1O60930 286 aaKnown RBP13.48□□□□□ -0.25
VPS54-203ENST00000409558 MS4A13Q5J8X5 152 aa13.48□□□□□ -0.25
VPS54-203ENST00000409558 PM20D1Q6GTS8 502 aa13.48□□□□□ -0.25
VPS54-203ENST00000409558 DENND1CQ8IV53 801 aa13.48□□□□□ -0.25
VPS54-203ENST00000409558 NUP93Q8N1F7 819 aa13.48□□□□□ -0.25
VPS54-203ENST00000409558 SPDYE1Q8NFV5 336 aaPredicted RBP13.48□□□□□ -0.25
VPS54-203ENST00000409558 ERLEC1Q96DZ1 483 aa13.48□□□□□ -0.25
VPS54-203ENST00000409558 LRGUKQ96M69 825 aa13.48□□□□□ -0.25
VPS54-203ENST00000409558 TSC22D3Q99576 134 aa13.48□□□□□ -0.25
VPS54-203ENST00000409558 PCDHGB4Q9UN71 923 aa13.48□□□□□ -0.25
VPS54-203ENST00000409558 PCDHGB5Q9Y5G0 923 aa13.48□□□□□ -0.25
VPS54-203ENST00000409558 COPG1Q9Y678 874 aaKnown RBP13.48□□□□□ -0.25
VPS54-203ENST00000409558 KIAA0100Q14667 2235 aaKnown RBP13.48□□□□□ -0.25
VPS54-203ENST00000409558 SBF1O95248 1867 aa13.48□□□□□ -0.25
VPS54-203ENST00000409558 CHRM3P20309 590 aa13.48□□□□□ -0.25
VPS54-203ENST00000409558 RPL9P32969 192 aaKnown RBP13.48□□□□□ -0.25
VPS54-203ENST00000409558 HARS2P49590 506 aaKnown RBP13.48□□□□□ -0.25
VPS54-203ENST00000409558 CDKN2DP55273 166 aa13.48□□□□□ -0.25
VPS54-203ENST00000409558 RPS6KA2Q15349 733 aa13.48□□□□□ -0.25
VPS54-203ENST00000409558 CLLU1OSQ5K130 101 aa13.48□□□□□ -0.25
VPS54-203ENST00000409558 MRPL46Q9H2W6 279 aaKnown RBP13.48□□□□□ -0.25
VPS54-203ENST00000409558 EGFL7Q9UHF1 273 aa13.48□□□□□ -0.25
VPS54-203ENST00000409558 AURKCQ9UQB9 309 aa13.48□□□□□ -0.25
VPS54-203ENST00000409558 IQCF5A8MTL0 148 aa13.47□□□□□ -0.25
VPS54-203ENST00000409558 CCNCP24863 283 aa13.47□□□□□ -0.25
VPS54-203ENST00000409558 C1QTNF8P60827 252 aa13.47□□□□□ -0.25
VPS54-203ENST00000409558 GRIK3Q13003 919 aa13.47□□□□□ -0.25
VPS54-203ENST00000409558 CD300LGQ6UXG3 332 aa13.47□□□□□ -0.25
VPS54-203ENST00000409558 ZYG11AQ6WRX3 759 aa13.47□□□□□ -0.25
VPS54-203ENST00000409558 RTL3Q8N8U3 475 aaKnown RBP13.47□□□□□ -0.25
VPS54-203ENST00000409558 DBF4BQ8NFT6 615 aa13.47□□□□□ -0.25
VPS54-203ENST00000409558 TRPC4APQ8TEL6 797 aa13.47□□□□□ -0.25
VPS54-203ENST00000409558 ZNF212Q9UDV6 495 aa13.47□□□□□ -0.25
VPS54-203ENST00000409558 UBXN8O00124 270 aa13.47□□□□□ -0.25
VPS54-203ENST00000409558 MATN2O00339 956 aa13.47□□□□□ -0.25
VPS54-203ENST00000409558 MUSKO15146 869 aa13.47□□□□□ -0.25
VPS54-203ENST00000409558 TOMM70O94826 608 aa13.47□□□□□ -0.25
VPS54-203ENST00000409558 TWF1Q12792 350 aa13.47□□□□□ -0.25
VPS54-203ENST00000409558 CAPRIN1Q14444 709 aaKnown RBP13.47□□□□□ -0.25
VPS54-203ENST00000409558 HECTD2Q5U5R9 776 aa13.47□□□□□ -0.25
VPS54-203ENST00000409558 BNC2Q6ZN30 1099 aaPredicted RBP13.47□□□□□ -0.25
VPS54-203ENST00000409558 TAS1R1Q7RTX1 841 aa13.47□□□□□ -0.25
VPS54-203ENST00000409558 SAPCD2Q86UD0 394 aa13.47□□□□□ -0.25
VPS54-203ENST00000409558 FBXW8Q8N3Y1 598 aa13.47□□□□□ -0.25
VPS54-203ENST00000409558 MAB21L3Q8N8X9 362 aa13.47□□□□□ -0.25
VPS54-203ENST00000409558 GLT1D1Q96MS3 346 aa13.47□□□□□ -0.25
VPS54-203ENST00000409558 MAGEB16A2A368 324 aa13.47□□□□□ -0.25
VPS54-203ENST00000409558 MANSC4A6NHS7 340 aaPredicted RBP13.47□□□□□ -0.25
VPS54-203ENST00000409558 TLR5O60602 858 aa13.47□□□□□ -0.25
VPS54-203ENST00000409558 ACADSP16219 412 aa13.47□□□□□ -0.25
VPS54-203ENST00000409558 HADHAP40939 763 aa13.47□□□□□ -0.25
VPS54-203ENST00000409558 MLLT6P55198 1093 aaPredicted RBP13.47□□□□□ -0.25
VPS54-203ENST00000409558 SCAPQ12770 1279 aa13.47□□□□□ -0.25
VPS54-203ENST00000409558 MAP7D1Q3KQU3 841 aa13.47□□□□□ -0.25
VPS54-203ENST00000409558 LSMEM2Q8N112 164 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms