RNA–Protein interactions for RNA: ENST00000409326.6

PTCD3-202, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 522 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-202ENST00000409326 ZSWIM9Q86XI8 627 aa20.48■□□□□ 0.87
PTCD3-202ENST00000409326 SLC13A5Q86YT5 568 aaPredicted RBP20.48■□□□□ 0.87
PTCD3-202ENST00000409326 CDKL3Q8IVW4 592 aaPredicted RBP20.48■□□□□ 0.87
PTCD3-202ENST00000409326 SLC35F6Q8N357 371 aa20.48■□□□□ 0.87
PTCD3-202ENST00000409326 ARRDC2Q8TBH0 407 aa20.48■□□□□ 0.87
PTCD3-202ENST00000409326 HTR3CQ8WXA8 447 aa20.48■□□□□ 0.87
PTCD3-202ENST00000409326 SNX19Q92543 992 aa20.48■□□□□ 0.87
PTCD3-202ENST00000409326 AGAP3Q96P47 875 aa20.48■□□□□ 0.87
PTCD3-202ENST00000409326 VAT1Q99536 393 aa20.48■□□□□ 0.87
PTCD3-202ENST00000409326 FAM118BQ9BPY3 351 aa20.48■□□□□ 0.87
PTCD3-202ENST00000409326 TMEM74BQ9NUR3 256 aa20.48■□□□□ 0.87
PTCD3-202ENST00000409326 EIF2B4Q9UI10 523 aaKnown RBP20.48■□□□□ 0.87
PTCD3-202ENST00000409326 PCDHGC4Q9Y5F7 938 aa20.48■□□□□ 0.87
PTCD3-202ENST00000409326 TCRBV7S2A1N4TA0A589 114 aa20.47■□□□□ 0.87
PTCD3-202ENST00000409326 UPK3BL1B0FP48 263 aa20.47■□□□□ 0.87
PTCD3-202ENST00000409326 UPK3BL2E5RIL1 263 aa20.47■□□□□ 0.87
PTCD3-202ENST00000409326 ENC1O14682 589 aa20.47■□□□□ 0.87
PTCD3-202ENST00000409326 AREL1O15033 823 aa20.47■□□□□ 0.87
PTCD3-202ENST00000409326 RNGTTO60942 597 aaKnown RBP20.47■□□□□ 0.87
PTCD3-202ENST00000409326 SERPINF2P08697 491 aa20.47■□□□□ 0.87
PTCD3-202ENST00000409326 XPAP23025 273 aaPredicted RBP20.47■□□□□ 0.87
PTCD3-202ENST00000409326 CD27P26842 260 aa20.47■□□□□ 0.87
PTCD3-202ENST00000409326 MAOBP27338 520 aa20.47■□□□□ 0.87
PTCD3-202ENST00000409326 NIPAL4Q0D2K0 466 aa20.47■□□□□ 0.87
PTCD3-202ENST00000409326 SPEM2Q0P670 501 aa20.47■□□□□ 0.87
PTCD3-202ENST00000409326 LRRC73Q5JTD7 316 aa20.47■□□□□ 0.87
PTCD3-202ENST00000409326 DCLK2Q8N568 766 aa20.47■□□□□ 0.87
PTCD3-202ENST00000409326 TEKT5Q96M29 485 aa20.47■□□□□ 0.87
PTCD3-202ENST00000409326 ORAI3Q9BRQ5 295 aa20.47■□□□□ 0.87
PTCD3-202ENST00000409326 VPS45Q9NRW7 570 aa20.47■□□□□ 0.87
PTCD3-202ENST00000409326 SUSD2Q9UGT4 822 aa20.47■□□□□ 0.87
PTCD3-202ENST00000409326 ITM2BQ9Y287 266 aa20.47■□□□□ 0.87
PTCD3-202ENST00000409326 ADAMTS9Q9P2N4 1935 aa20.47■□□□□ 0.87
PTCD3-202ENST00000409326 ZNF292O60281 2723 aa20.47■□□□□ 0.87
PTCD3-202ENST00000409326 GVINP1Q7Z2Y8 2422 aa20.46■□□□□ 0.87
PTCD3-202ENST00000409326 LAMA1P25391 3075 aa20.46■□□□□ 0.87
PTCD3-202ENST00000409326 A0A1W2PPC4 97 aa20.46■□□□□ 0.87
PTCD3-202ENST00000409326 TSPAN6O43657 245 aa20.46■□□□□ 0.87
PTCD3-202ENST00000409326 ZNF189O75820 626 aaPredicted RBP20.46■□□□□ 0.87
PTCD3-202ENST00000409326 PCDH8O95206 1070 aa20.46■□□□□ 0.87
PTCD3-202ENST00000409326 RBL1P28749 1068 aa20.46■□□□□ 0.87
PTCD3-202ENST00000409326 POLR2LP62875 67 aaKnown RBP20.46■□□□□ 0.87
PTCD3-202ENST00000409326 ELP6Q0PNE2 266 aa20.46■□□□□ 0.87
PTCD3-202ENST00000409326 IHHQ14623 411 aa20.46■□□□□ 0.87
PTCD3-202ENST00000409326 FAM182AQ5T1J6 154 aa20.46■□□□□ 0.87
PTCD3-202ENST00000409326 KIAA1161Q6NSJ0 714 aa20.46■□□□□ 0.87
PTCD3-202ENST00000409326 RABEPKQ7Z6M1 372 aa20.46■□□□□ 0.87
PTCD3-202ENST00000409326 ZSCAN30Q86W11 494 aa20.46■□□□□ 0.87
PTCD3-202ENST00000409326 HORMAD1Q86X24 394 aa20.46■□□□□ 0.87
PTCD3-202ENST00000409326 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP20.46■□□□□ 0.87
PTCD3-202ENST00000409326 PAF1Q8N7H5 531 aa20.46■□□□□ 0.87
PTCD3-202ENST00000409326 PDCD6IPQ8WUM4 868 aaKnown RBP20.46■□□□□ 0.87
PTCD3-202ENST00000409326 FERMT1Q9BQL6 677 aa20.46■□□□□ 0.87
PTCD3-202ENST00000409326 MIR1-1HGQ9H1L0 117 aa20.46■□□□□ 0.87
PTCD3-202ENST00000409326 PARD6AQ9NPB6 346 aa20.46■□□□□ 0.87
PTCD3-202ENST00000409326 GGT7Q9UJ14 662 aa20.46■□□□□ 0.87
PTCD3-202ENST00000409326 R3HDM2Q9Y2K5 976 aaKnown RBP20.46■□□□□ 0.87
PTCD3-202ENST00000409326 RAI2Q9Y5P3 530 aa20.46■□□□□ 0.87
PTCD3-202ENST00000409326 PCDH15Q96QU1 1955 aa20.46■□□□□ 0.87
PTCD3-202ENST00000409326 A0A1W2PQU0 124 aa20.45■□□□□ 0.86
PTCD3-202ENST00000409326 NEMP1O14524 444 aa20.45■□□□□ 0.86
PTCD3-202ENST00000409326 PGLSO95336 258 aa20.45■□□□□ 0.86
PTCD3-202ENST00000409326 CPP00450 1065 aa20.45■□□□□ 0.86
PTCD3-202ENST00000409326 MMP2P08253 660 aa20.45■□□□□ 0.86
PTCD3-202ENST00000409326 GNSP15586 552 aa20.45■□□□□ 0.86
PTCD3-202ENST00000409326 TGM1P22735 817 aa20.45■□□□□ 0.86
PTCD3-202ENST00000409326 NUDT1P36639 197 aa20.45■□□□□ 0.86
PTCD3-202ENST00000409326 RPS21P63220 83 aaKnown RBP20.45■□□□□ 0.86
PTCD3-202ENST00000409326 CCDC6Q16204 474 aa20.45■□□□□ 0.86
PTCD3-202ENST00000409326 TMEM259Q4ZIN3 620 aa20.45■□□□□ 0.86
PTCD3-202ENST00000409326 ARMC12Q5T9G4 340 aa20.45■□□□□ 0.86
PTCD3-202ENST00000409326 ERAP2Q6P179 960 aa20.45■□□□□ 0.86
PTCD3-202ENST00000409326 DARS2Q6PI48 645 aaKnown RBP20.45■□□□□ 0.86
PTCD3-202ENST00000409326 PRPF39Q86UA1 669 aaKnown RBP20.45■□□□□ 0.86
PTCD3-202ENST00000409326 ZCCHC9Q8N567 271 aaKnown RBP20.45■□□□□ 0.86
PTCD3-202ENST00000409326 C1orf216Q8TAB5 229 aa20.45■□□□□ 0.86
PTCD3-202ENST00000409326 CEP76Q8TAP6 659 aa20.45■□□□□ 0.86
PTCD3-202ENST00000409326 IMP4Q96G21 291 aaKnown RBP20.45■□□□□ 0.86
PTCD3-202ENST00000409326 FEM1CQ96JP0 617 aa20.45■□□□□ 0.86
PTCD3-202ENST00000409326 TDRD1Q9BXT4 1180 aaKnown RBP20.45■□□□□ 0.86
PTCD3-202ENST00000409326 SLC25A51Q9H1U9 297 aa20.45■□□□□ 0.86
PTCD3-202ENST00000409326 C10orf88Q9H8K7 445 aa20.45■□□□□ 0.86
PTCD3-202ENST00000409326 EBF2Q9HAK2 575 aa20.45■□□□□ 0.86
PTCD3-202ENST00000409326 GLOD4Q9HC38 313 aa20.45■□□□□ 0.86
PTCD3-202ENST00000409326 PCDH12Q9NPG4 1184 aa20.45■□□□□ 0.86
PTCD3-202ENST00000409326 KCND1Q9NSA2 647 aa20.45■□□□□ 0.86
PTCD3-202ENST00000409326 SEMA4GQ9NTN9 838 aa20.45■□□□□ 0.86
PTCD3-202ENST00000409326 KLHL8Q9P2G9 620 aaPredicted RBP20.45■□□□□ 0.86
PTCD3-202ENST00000409326 ZFR2Q9UPR6 939 aaKnown RBP20.45■□□□□ 0.86
PTCD3-202ENST00000409326 PCDHB9Q9Y5E1 797 aa20.45■□□□□ 0.86
PTCD3-202ENST00000409326 RIOK3O14730 519 aaKnown RBP20.44■□□□□ 0.86
PTCD3-202ENST00000409326 FZD6O60353 706 aa20.44■□□□□ 0.86
PTCD3-202ENST00000409326 ATP1A1P05023 1023 aaKnown RBP20.44■□□□□ 0.86
PTCD3-202ENST00000409326 ZNF806P0C7X5 589 aa20.44■□□□□ 0.86
PTCD3-202ENST00000409326 ITIH2P19823 946 aa20.44■□□□□ 0.86
PTCD3-202ENST00000409326 CA4P22748 312 aa20.44■□□□□ 0.86
PTCD3-202ENST00000409326 MAT2AP31153 395 aaKnown RBP20.44■□□□□ 0.86
PTCD3-202ENST00000409326 CXCR5P32302 372 aa20.44■□□□□ 0.86
PTCD3-202ENST00000409326 CD68P34810 354 aaPredicted RBP20.44■□□□□ 0.86
PTCD3-202ENST00000409326 MMP12P39900 470 aa20.44■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms