RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 ARHGAP10A1A4S6 786 aa9.15□□□□□ -0.94
LIG4-202ENST00000405925 ILVBLA1L0T0 632 aa9.15□□□□□ -0.94
LIG4-202ENST00000405925 TTC24A2A3L6 582 aaPredicted RBP9.15□□□□□ -0.94
LIG4-202ENST00000405925 C2orf78A6NCI8 922 aa9.15□□□□□ -0.94
LIG4-202ENST00000405925 GNGT2O14610 69 aa9.15□□□□□ -0.94
LIG4-202ENST00000405925 RAD51BO15315 384 aa9.15□□□□□ -0.94
LIG4-202ENST00000405925 CD3EAPO15446 510 aaKnown RBP9.15□□□□□ -0.94
LIG4-202ENST00000405925 TGM5O43548 720 aa9.15□□□□□ -0.94
LIG4-202ENST00000405925 DNTTP04053 509 aa9.15□□□□□ -0.94
LIG4-202ENST00000405925 HALP42357 657 aa9.15□□□□□ -0.94
LIG4-202ENST00000405925 NAGLUP54802 743 aa9.15□□□□□ -0.94
LIG4-202ENST00000405925 AQP5P55064 265 aa9.15□□□□□ -0.94
LIG4-202ENST00000405925 ADAM17P78536 824 aa9.15□□□□□ -0.94
LIG4-202ENST00000405925 IL1RL1Q01638 556 aa9.15□□□□□ -0.94
LIG4-202ENST00000405925 SEMG2Q02383 582 aa9.15□□□□□ -0.94
LIG4-202ENST00000405925 DMTNQ08495 405 aa9.15□□□□□ -0.94
LIG4-202ENST00000405925 CAMK2GQ13555 558 aaPredicted RBP9.15□□□□□ -0.94
LIG4-202ENST00000405925 PLCL1Q15111 1095 aa9.15□□□□□ -0.94
LIG4-202ENST00000405925 INSCQ1MX18 579 aa9.15□□□□□ -0.94
LIG4-202ENST00000405925 CCDC153Q494R4 210 aa9.15□□□□□ -0.94
LIG4-202ENST00000405925 FAM26DQ5JW98 314 aa9.15□□□□□ -0.94
LIG4-202ENST00000405925 LY6G5CQ5SRR4 150 aa9.15□□□□□ -0.94
LIG4-202ENST00000405925 STXBP5Q5T5C0 1151 aa9.15□□□□□ -0.94
LIG4-202ENST00000405925 SEL1L3Q68CR1 1132 aa9.15□□□□□ -0.94
LIG4-202ENST00000405925 ANKS6Q68DC2 871 aa9.15□□□□□ -0.94
LIG4-202ENST00000405925 SLC9A4Q6AI14 798 aa9.15□□□□□ -0.94
LIG4-202ENST00000405925 ESRP1Q6NXG1 681 aaKnown RBP9.15□□□□□ -0.94
LIG4-202ENST00000405925 EFL1Q7Z2Z2 1120 aaKnown RBP9.15□□□□□ -0.94
LIG4-202ENST00000405925 RGL4Q8IZJ4 473 aa9.15□□□□□ -0.94
LIG4-202ENST00000405925 ZSCAN18Q8TBC5 510 aaPredicted RBP9.15□□□□□ -0.94
LIG4-202ENST00000405925 BPIFB1Q8TDL5 484 aa9.15□□□□□ -0.94
LIG4-202ENST00000405925 SLC7A5P2Q9GIP4 190 aa9.15□□□□□ -0.94
LIG4-202ENST00000405925 HEY2Q9UBP5 337 aa9.15□□□□□ -0.94
LIG4-202ENST00000405925 HSFX4A0A1B0GTS1 333 aaPredicted RBP9.15□□□□□ -0.94
LIG4-202ENST00000405925 HSFX3A0A1B0GWH4 333 aaPredicted RBP9.15□□□□□ -0.94
LIG4-202ENST00000405925 TMEM189-UBE2V1I3L0A0 370 aa9.15□□□□□ -0.94
LIG4-202ENST00000405925 AIM2O14862 343 aa9.15□□□□□ -0.94
LIG4-202ENST00000405925 FAM189A1O60320 539 aa9.15□□□□□ -0.94
LIG4-202ENST00000405925 SERPINE1P05121 402 aa9.15□□□□□ -0.94
LIG4-202ENST00000405925 TFEBP19484 476 aa9.15□□□□□ -0.94
LIG4-202ENST00000405925 FGFR3P22607 806 aa9.15□□□□□ -0.94
LIG4-202ENST00000405925 CACNA2D1P54289 1103 aa9.15□□□□□ -0.94
LIG4-202ENST00000405925 TCEAL1Q15170 157 aa9.15□□□□□ -0.94
LIG4-202ENST00000405925 CRY1Q16526 586 aa9.15□□□□□ -0.94
LIG4-202ENST00000405925 LRRC73Q5JTD7 316 aa9.15□□□□□ -0.94
LIG4-202ENST00000405925 EXOC3L1Q86VI1 746 aa9.15□□□□□ -0.94
LIG4-202ENST00000405925 SPATA6LQ8N4H0 392 aa9.15□□□□□ -0.94
LIG4-202ENST00000405925 ZMIZ2Q8NF64 920 aa9.15□□□□□ -0.94
LIG4-202ENST00000405925 OR52K2Q8NGK3 314 aa9.15□□□□□ -0.94
LIG4-202ENST00000405925 MCOLN3Q8TDD5 553 aa9.15□□□□□ -0.94
LIG4-202ENST00000405925 KCTD4Q8WVF5 259 aa9.15□□□□□ -0.94
LIG4-202ENST00000405925 ZNF333Q96JL9 665 aa9.15□□□□□ -0.94
LIG4-202ENST00000405925 CAB39LQ9H9S4 337 aa9.15□□□□□ -0.94
LIG4-202ENST00000405925 NDRG2Q9UN36 371 aaKnown RBP9.15□□□□□ -0.94
LIG4-202ENST00000405925 ARIH1Q9Y4X5 557 aaPredicted RBP9.15□□□□□ -0.94
LIG4-202ENST00000405925 MCM3APO60318 1980 aa9.15□□□□□ -0.94
LIG4-202ENST00000405925 A0A1W2PPM1 405 aa9.15□□□□□ -0.94
LIG4-202ENST00000405925 TRPC5OSA6NMA1 111 aa9.15□□□□□ -0.94
LIG4-202ENST00000405925 DGKIO75912 1065 aa9.15□□□□□ -0.94
LIG4-202ENST00000405925 FAM155BO75949 473 aa9.15□□□□□ -0.94
LIG4-202ENST00000405925 POP4O95707 220 aaKnown RBP9.15□□□□□ -0.94
LIG4-202ENST00000405925 PSMD8P48556 350 aa9.15□□□□□ -0.94
LIG4-202ENST00000405925 MGAT3Q09327 533 aa9.15□□□□□ -0.94
LIG4-202ENST00000405925 ZNF252P-AS1Q0IIN9 211 aa9.15□□□□□ -0.94
LIG4-202ENST00000405925 SEMA5AQ13591 1074 aa9.15□□□□□ -0.94
LIG4-202ENST00000405925 HIST2H2ACQ16777 129 aaPredicted RBP9.15□□□□□ -0.94
LIG4-202ENST00000405925 RASIP1Q5U651 963 aa9.15□□□□□ -0.94
LIG4-202ENST00000405925 HIST2H2AA3Q6FI13 130 aa9.15□□□□□ -0.94
LIG4-202ENST00000405925 FAM171BQ6P995 826 aa9.15□□□□□ -0.94
LIG4-202ENST00000405925 ALKAL1Q6UXT8 129 aa9.15□□□□□ -0.94
LIG4-202ENST00000405925 SETD3Q86TU7 594 aaPredicted RBP9.15□□□□□ -0.94
LIG4-202ENST00000405925 IFNEQ86WN2 208 aa9.15□□□□□ -0.94
LIG4-202ENST00000405925 SLC22A9Q8IVM8 553 aa9.15□□□□□ -0.94
LIG4-202ENST00000405925 ELMO1Q92556 727 aa9.15□□□□□ -0.94
LIG4-202ENST00000405925 MED8Q96G25 268 aa9.15□□□□□ -0.94
LIG4-202ENST00000405925 DNAJC1Q96KC8 554 aaKnown RBP9.15□□□□□ -0.94
LIG4-202ENST00000405925 PSD3Q9NYI0 1048 aa9.15□□□□□ -0.94
LIG4-202ENST00000405925 TBC1D3DA0A087WVF3 549 aa9.15□□□□□ -0.95
LIG4-202ENST00000405925 TBC1D3IA0A087WXS9 549 aa9.15□□□□□ -0.95
LIG4-202ENST00000405925 TBC1D3EA0A087X179 549 aa9.15□□□□□ -0.95
LIG4-202ENST00000405925 TBC1D3KA0A087X1G2 549 aa9.15□□□□□ -0.95
LIG4-202ENST00000405925 TCRBV7S3A2A0A539 114 aa9.15□□□□□ -0.95
LIG4-202ENST00000405925 TBC1D3FA6NER0 549 aaPredicted RBP9.15□□□□□ -0.95
LIG4-202ENST00000405925 TBC1D3LB9A6J9 549 aa9.15□□□□□ -0.95
LIG4-202ENST00000405925 H3BMM5 538 aa9.15□□□□□ -0.95
LIG4-202ENST00000405925 LEFTY2O00292 366 aa9.15□□□□□ -0.95
LIG4-202ENST00000405925 FANCGO15287 622 aa9.15□□□□□ -0.95
LIG4-202ENST00000405925 ADAM12O43184 909 aa9.15□□□□□ -0.95
LIG4-202ENST00000405925 RNASEH2AO75792 299 aaKnown RBP9.15□□□□□ -0.95
LIG4-202ENST00000405925 SLC25A14O95258 325 aaPredicted RBP9.15□□□□□ -0.95
LIG4-202ENST00000405925 TBC1D3HP0C7X1 549 aa9.15□□□□□ -0.95
LIG4-202ENST00000405925 CYP2A7P20853 494 aa9.15□□□□□ -0.95
LIG4-202ENST00000405925 PAFAH1B3Q15102 231 aaKnown RBP9.15□□□□□ -0.95
LIG4-202ENST00000405925 SNCBQ16143 134 aa9.15□□□□□ -0.95
LIG4-202ENST00000405925 C2orf27AQ580R0 203 aa9.15□□□□□ -0.95
LIG4-202ENST00000405925 MBLAC2Q68D91 279 aa9.15□□□□□ -0.95
LIG4-202ENST00000405925 TBC1D3GQ6DHY5 549 aa9.15□□□□□ -0.95
LIG4-202ENST00000405925 TBC1D3CQ6IPX1 549 aa9.15□□□□□ -0.95
LIG4-202ENST00000405925 FAM45BPQ6NSW5 357 aa9.15□□□□□ -0.95
LIG4-202ENST00000405925 LAYNQ6UX15 382 aa9.15□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms